[en] Enterotoxigenic Escherichia coli (ETEC) causing post-weaning diarrhea (PWD) in piglets have a detrimental impact on animal health and economy in pig production. ETEC strains can adhere to the host’s small intestinal epithelial cells using fimbriae such as F4 and F18. Phage therapy could represent an interesting alternative to antimicrobial resistance against ETEC infections. In this study, four bacteriophages, named vB_EcoS_ULIM2, vB_EcoM_ULIM3, vB_EcoM_ULIM8 and vB_EcoM_ULIM9, were isolated against an O8:F18 E. coli strain (A-I-210) and selected based on their host range. These phages were characterized in vitro, showing a lytic activity over a pH (4–10) and temperature (25–45 °C) range. According to genomic analysis, these bacteriophages belong to the Caudoviricetes class. No gene related to lysogeny was identified. The in vivo Galleria mellonella larvae model suggested the therapeutic potential of one selected phage, vB_EcoS_ULIM2, with a statistically significant increase in survival compared to non-treated larvae. To assess the effect of this phage on the piglet gut microbiota, vB_EcoS_ULIM2 was inoculated in a static model simulating the piglet intestinal microbial ecosystem for 72 h. This study shows that this phage replicates efficiently both in vitro and in vivo in a Galleria mellonella model and reveals the safety of the phage-based treatment on the piglet microbiota.
Disciplines :
Veterinary medicine & animal health
Author, co-author :
Navez, Margaux ; Université de Liège - ULiège > GIGA > GIGA Cardiovascular Sciences - Laboratory of Translational Research in Nephrology
Antoine, Céline ; Université de Liège - ULiège > Fundamental and Applied Research for Animals and Health (FARAH)
Laforêt, Fanny ; Université de Liège - ULiège > Fundamental and Applied Research for Animals and Health (FARAH)
Goya-Jorge, Elizabeth ; Université de Liège - ULiège > Fundamental and Applied Research for Animals and Health (FARAH) > FARAH: Santé publique vétérinaire
Douny, Caroline ; Université de Liège - ULiège > Département de sciences des denrées alimentaires (DDA) > Analyse des denrées alimentaires
Scippo, Marie-Louise ; Université de Liège - ULiège > Département de sciences des denrées alimentaires (DDA) > Analyse des denrées alimentaires
Vermeersch, Marjorie; Center for Microscopy and Molecular Imaging, Electron Microscopy Laboratory, ULB, 6041 Gosselies, Belgium
Duprez, Jean-Noël ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI)
Daube, Georges ; Université de Liège - ULiège > Département de sciences des denrées alimentaires (DDA) > Microbiologie des denrées alimentaires
Mainil, Jacques ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI)
Taminiau, Bernard ; Université de Liège - ULiège > Fundamental and Applied Research for Animals and Health (FARAH) > FARAH: Santé publique vétérinaire
Delcenserie, Véronique ; Université de Liège - ULiège > Département de sciences des denrées alimentaires (DDA) > Gestion de la qualité dans la chaîne alimentaire
Thiry, Damien ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI) > Bactériologie vétérinaire et maladies bactériennes animales
Buuck S. Smith K. Fowler R.C. Cebelinski E. Lappi V. Boxrud D. Medus C. Epidemiology of Enterotoxigenic Escherichia Coli Infection in Minnesota, 2016–2017 Epidemiol. Infect. 2020 148 e206 10.1017/S0950268820001934
Croxen M.A. Finlay B.B. Molecular Mechanisms of Escherichia Coli Pathogenicity Nat. Rev. Microbiol. 2010 8 26 38 10.1038/nrmicro2265
Pakbin B. Brück W.M. Rossen J.W.A. Virulence Factors of Enteric Pathogenic Escherichia Coli: A Review Int. J. Mol. Sci. 2021 22 9922 10.3390/ijms22189922 34576083
Luise D. Lauridsen C. Bosi P. Trevisi P. Methodology and Application of Escherichia Coli F4 and F18 Encoding Infection Models in Post-Weaning Pigs J. Anim. Sci. Biotechnol. 2019 10 53 10.1186/s40104-019-0352-7 31210932
Zimmerman J.J. Karriker L.A. Ramirez A. Schwartz K.J. Stevenson G.W. Zhang J. Colibacillosis 11th ed. Wiley-Blackwell Hoboken, NJ, USA 2019 978-1-119-35085-9
Bin P. Tang Z. Liu S. Chen S. Xia Y. Liu J. Wu H. Zhu G. Intestinal Microbiota Mediates Enterotoxigenic Escherichia Coli-Induced Diarrhea in Piglets BMC Vet. Res. 2018 14 385 10.1186/s12917-018-1704-9
Luppi A. Gibellini M. Gin T. Vangroenweghe F. Vandenbroucke V. Bauerfeind R. Bonilauri P. Labarque G. Hidalgo Á. Prevalence of Virulence Factors in Enterotoxigenic Escherichia Coli Isolated from Pigs with Post-Weaning Diarrhoea in Europe Porc. Health Manag. 2016 2 20 10.1186/s40813-016-0039-9
Sinha R. Sahoo N.R. Shrivastava K. Kumar P. Qureshi S. De U.K. Kumar A. Kumar G.V.P.P.S.R. Bhushan B. Resistance to ETEC F4/F18–Mediated Piglet Diarrhoea: Opening the Gene Black Box Trop. Anim. Health Prod. 2019 51 1307 1320 10.1007/s11250-019-01934-x 31127494
Rhouma M. Fairbrother J.M. Beaudry F. Letellier A. Post Weaning Diarrhea in Pigs: Risk Factors and Non-Colistin-Based Control Strategies Acta Vet. Scand. 2017 59 31 10.1186/s13028-017-0299-7
Rhouma M. Beaudry F. Thériault W. Bergeron N. Beauchamp G. Laurent-Lewandowski S. Fairbrother J.M. Letellier A. In Vivo Therapeutic Efficacy and Pharmacokinetics of Colistin Sulfate in an Experimental Model of Enterotoxigenic Escherichia Coli Infection in Weaned Pigs Vet. Res. 2016 47 58 10.1186/s13567-016-0344-y
Liu Y.Y. Wang Y. Walsh T.R. Yi L.X. Zhang R. Spencer J. Doi Y. Tian G. Dong B. Huang X. et al. Emergence of Plasmid-Mediated Colistin Resistance Mechanism MCR-1 in Animals and Human Beings in China: A Microbiological and Molecular Biological Study Lancet Infect. Dis. 2016 16 161 168 10.1016/S1473-3099(15)00424-7
Laird T.J. Abraham S. Jordan D. Pluske J.R. Hampson D.J. Trott D.J. O’Dea M. Porcine Enterotoxigenic Escherichia Coli: Antimicrobial Resistance and Development of Microbial-Based Alternative Control Strategies Vet. Microbiol. 2021 258 109117 10.1016/j.vetmic.2021.109117 34049073
Kim N. Gu M.J. Kye Y.C. Ju Y.J. Hong R. Ju D.B. Pyung Y.J. Han S.H. Park B.C. Yun C.H. Bacteriophage EK99P-1 Alleviates Enterotoxigenic Escherichia Coli K99-Induced Barrier Dysfunction and Inflammation Sci. Rep. 2022 12 941 10.1038/s41598-022-04861-4
Cha S.B. Yoo A.N. Lee W.J. Shin M.K. Jung M.H. Shin S.W. Cho Y.W. Yoo H.S. Effect of Bacteriophage in Enterotoxigenic Escherichia Coli (ETEC) Infected Pigs J. Vet. Med. Sci. 2012 74 1037 1039 10.1292/jvms.11-0556
Lee C.Y. Kim S.J. Park B.C. Han J.H. Effects of Dietary Supplementation of Bacteriophages against Enterotoxigenic Escherichia Coli (ETEC) K88 on Clinical Symptoms of Post-Weaning Pigs Challenged with the ETEC Pathogen J. Anim. Physiol. Anim. Nutr. 2017 101 88 95 10.1111/jpn.12513
Malik D.J. Sokolov I.J. Vinner G.K. Mancuso F. Cinquerrui S. Vladisavljevic G.T. Clokie M.R.J. Garton N.J. Stapley A.G.F. Kirpichnikova A. Formulation, Stabilisation and Encapsulation of Bacteriophage for Phage Therapy Adv. Colloid Interface Sci. 2017 249 100 133 10.1016/j.cis.2017.05.014 28688779
Barnoy S. Gancz H. Zhu Y. Honnold C.L. Zurawski D.V. Venkatesan M.M. The Galleria Mellonella Larvae as an In Vivo Model for Evaluation of Shigella Virulence Gut Microbes 2017 8 335 350 10.1080/19490976.2017.1293225
Cutuli M.A. Petronio Petronio G. Vergalito F. Magnifico I. Pietrangelo L. Venditti N. Di Marco R. Galleria Mellonella as a Consolidated In Vivo Model Hosts: New Developments in Antibacterial Strategies and Novel Drug Testing Virulence 2019 10 527 541 10.1080/21505594.2019.1621649
Antoine C. Laforêt F. Blasdel B. Fall A. Duprez J.N. Mainil J. Delcenserie V. Thiry D. In Vitro Characterization and In Vivo Efficacy Assessment in Galleria Mellonella Larvae of Newly Isolated Bacteriophages against Escherichia Coli K1 Viruses 2021 13 2005 10.3390/v13102005
Petronio Petronio G. Cutuli M.A. Magnifico I. Venditti N. Pietrangelo L. Vergalito F. Pane A. Scapagnini G. Di Marco R. In Vitro and In Vivo Biological Activity of Berberine Chloride against Uropathogenic E. coli Strains Using Galleria Mellonella as a Host Model Molecules 2020 25 5010 10.3390/molecules25215010 33137930
Manohar P. Tamhankar A.J. Lundborg C.S. Ramesh N. Isolation, Characterization and In Vivo Efficacy of Escherichia Phage MyPSH1131 PLoS ONE 2018 13 e0206278 10.1371/journal.pone.0206278
Goya-Jorge E. Gonza I. Bondue P. Douny C. Taminiau B. Daube G. Scippo M.-L. Delcenserie V. Human Adult Microbiota in a Static Colon Model: AhR Transcriptional Activity at the Crossroads of Host–Microbe Interaction Foods 2022 11 1946 10.3390/foods11131946 35804761
Neckermann K. Claus G. De Baere S. Antonissen G. Lebrun S. Gemmi C. Taminiau B. Douny C. Scippo M.L. Schatzmayr D. et al. The Efficacy and Effect on Gut Microbiota of an Aflatoxin Binder and a Fumonisin Esterase Using an In Vitro Simulator of the Human Intestinal Microbial Ecosystem (SHIME®) Food Res. Int. 2021 145 110395 10.1016/j.foodres.2021.110395
Dufourny S. Everaert N. Lebrun S. Douny C. Scippo M.L. Li B. Taminiau B. Marzorati M. Wavreille J. Froidmont E. et al. Baby-SPIME: A Dynamic In Vitro Piglet Model Mimicking Gut Microbiota during the Weaning Process J. Microbiol. Methods 2019 167 105735 10.1016/j.mimet.2019.105735
Tóth I. Oswald E. Mainil J.G. Awad-Masalmeh M. Nagy B. Characterization of Intestinal Cnf1+ Escherichia Coli from Weaned Pigs Int. J. Med. Microbiol. 2000 290 539 542 10.1016/S1438-4221(00)80019-3
Blum M. Chang H.-Y. Chuguransky S. Grego T. Kandasaamy S. Mitchell A. Nuka G. Paysan-Lafosse T. Qureshi M. Raj S. et al. The InterPro Protein Families and Domains Database: 20 Years On Nucleic Acids Res. 2021 49 D344 D354 10.1093/nar/gkaa977
Turner D. Adriaenssens E.M. Tolstoy I. Kropinski A.M. Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation PHAGE 2021 2 170 182 10.1089/phage.2021.0013 35083439
Meier A. Söding J. Automatic Prediction of Protein 3D Structures by Probabilistic Multi-Template Homology Modeling PLoS Comput. Biol. 2015 11 e1004343 10.1371/journal.pcbi.1004343
Van den Abbeele P. Roos S. Eeckhaut V. MacKenzie D.A. Derde M. Verstraete W. Marzorati M. Possemiers S. Vanhoecke B. Van Immerseel F. et al. Incorporating a Mucosal Environment in a Dynamic Gut Model Results in a More Representative Colonization by Lactobacilli Microb. Biotechnol. 2012 5 106 115 10.1111/j.1751-7915.2011.00308.x
Van den Abbeele P. Grootaert C. Marzorati M. Possemiers S. Verstraete W. Gérard P. Rabot S. Bruneau A. El Aidy S. Derrien M. et al. Microbial Community Development in a Dynamic Gut Model Is Reproducible, Colon Region Specific, and Selective for Bacteroidetes and Clostridium Cluster IX Appl. Environ. Microbiol. 2010 76 5237 5246 10.1128/AEM.00759-10 20562281
Bondue P. Lebrun S. Taminiau B. Everaert N. LaPointe G. Crevecoeur S. Daube G. Delcenserie V. A Toddler SHIME® Model to Study Microbiota of Young Children FEMS Microbiol. Lett. 2020 367 fnaa135 10.1093/femsle/fnaa135
Bondue P. Lebrun S. Taminiau B. Everaert N. LaPointe G. Hendrick C. Gaillez J. Crèvecoeur S. Daube G. Delcenserie V. Effect of Bifidobacterium Crudilactis and 3′-Sialyllactose on the Toddler Microbiota Using the SHIME® Model Food Res. Int. 2020 138 109755 10.1016/j.foodres.2020.109755 33292938
Barron-Montenegro R. García R. Dueñas F. Rivera D. Opazo-Capurro A. Erickson S. Moreno-Switt A.I. Comparative Analysis of Felixounavirus Genomes Including Two New Members of the Genus That Infect Salmonella Infantis Antibiotics 2021 10 806 10.3390/antibiotics10070806
Hua Y. Luo T. Yang Y. Dong D. Wang R. Wang Y. Xu M. Guo X. Hu F. He P. Phage Therapy as a Promising New Treatment for Lung Infection Caused by Carbapenem-Resistant Acinetobacter Baumannii in Mice Front. Microbiol. 2018 8 2659 10.3389/fmicb.2017.02659 29375524
Jennes S. Merabishvili M. Soentjens P. Pang K.W. Rose T. Keersebilck E. Soete O. François P.M. Teodorescu S. Verween G. et al. Use of Bacteriophages in the Treatment of Colistin-Only-Sensitive Pseudomonas Aeruginosa Septicaemia in a Patient with Acute Kidney Injury—A Case Report Crit. Care 2017 21 2016 2018 10.1186/s13054-017-1709-y
Regeimbal J.M. Jacobs A.C. Corey B.W. Henry M.S. Thompson M.G. Pavlicek R.L. Quinones J. Hannah R.M. Ghebremedhin M. Crane N.J. et al. Personalized Therapeutic Cocktail of Wild Environmental Phages Rescues Mice from Acinetobacter Baumannii Wound Infections Antimicrob. Agents Chemother. 2016 60 5806 5816 10.1128/AAC.02877-15
Ngassam-Tchamba C. Duprez J.N. Fergestad M. De Visscher A. L’Abee-Lund T. De Vliegher S. Wasteson Y. Touzain F. Blanchard Y. Lavigne R. et al. In Vitro and In Vivo Assessment of Phage Therapy against Staphylococcus Aureus Causing Bovine Mastitis J. Glob. Antimicrob. Resist. 2020 22 762 770 10.1016/j.jgar.2020.06.020 32645442
Smith M.G. Jordan D. Chapman T.A. Chin J.J.C. Barton M.D. Do T.N. Fahy V.A. Fairbrother J.M. Trott D.J. Antimicrobial Resistance and Virulence Gene Profiles in Multi-Drug Resistant Enterotoxigenic Escherichia Coli Isolated from Pigs with Post-Weaning Diarrhoea Vet. Microbiol. 2010 145 299 307 10.1016/j.vetmic.2010.04.004
Vu-Khac H. Holoda E. Pilipčinec E. Distribution of Virulence Genes in Escherichia Coli Strains Isolated from Diarrhoeic Piglets in the Slovak Republic J. Vet. Med. Ser. B Infect. Dis. Vet. Public Health 2004 51 343 347 10.1111/j.1439-0450.2004.00769.x
Wei C. Zhao X. Induction of Viable but Nonculturable Escherichia Coli O157:H7 by Low Temperature and Its Resuscitation Front. Microbiol. 2018 9 2728 10.3389/fmicb.2018.02728
Górski A. Miedzybrodzki R. Borysowski J. Phage Therapy: A Practical Approach Springer International Publishing Cham, Switzerland 2019 10.1007/978-3-030-26736-0
Assafiri O. Song A.A.L. Tan G.H. Hanish I. Hashim A.M. Yusoff K. Klebsiella Virus UPM2146 Lyses Multiple Drug-Resistant Klebsiella Pneumoniae In Vitro and In Vivo PLoS ONE 2021 16 e0245354 10.1371/journal.pone.0245354
Merabishvili M. Vandenheuvel D. Kropinski A.M. Mast J. De Vos D. Verbeken G. Noben J.P. Lavigne R. Vaneechoutte M. Pirnay J.P. Characterization of Newly Isolated Lytic Bacteriophages Active against Acinetobacter Baumannii PLoS ONE 2014 9 e104853 10.1371/journal.pone.0104853
Bailly-Bechet M. Vergassola M. Rocha E. Causes for the Intriguing Presence of TRNAs in Phages Genome Res. 2007 17 1486 1495 10.1101/gr.6649807 17785533
Ismail M.H. Michie K.A. Goh Y.F. Noorian P. Kjelleberg S. Duggin I.G. McDougald D. Rice S.A. The Repressor C Protein, Pf4r, Controls Superinfection of Pseudomonas Aeruginosa PAO1 by the Pf4 Filamentous Phage and Regulates Host Gene Expression Viruses 2021 13 1614 10.3390/v13081614
Jeon J. Ryu C.M. Lee J.Y. Park J.H. Yong D. Lee K. In Vivo Application of Bacteriophage as a Potential Therapeutic Agent to Control OXA-66-like Carbapenemase-Producing Acinetobacter Baumannii Strains Belonging to Sequence Type 357 Appl. Environ. Microbiol. 2016 82 4200 4208 10.1128/AEM.00526-16
Cao F. Wang X. Wang L. Li Z. Che J. Wang L. Li X. Cao Z. Zhang J. Jin L. et al. Evaluation of the Efficacy of a Bacteriophage in the Treatment of Pneumonia Induced by Multidrug Resistance Klebsiella Pneumoniae in Mice BioMed. Res. Int. 2015 2015 752930 10.1155/2015/752930
Lu Z. Breidt F. Escherichia Coli O157:H7 Bacteriophage F241 Isolated from an Industrial Cucumber Fermentation at High Acidity and Salinity Front. Microbiol. 2015 6 67 10.3389/fmicb.2015.00067
Williams C.F. Walton G.E. Jiang L. Plummer S. Garaiova I. Gibson G.R. Comparative Analysis of Intestinal Tract Models Annu. Rev. Food Sci. Technol. 2015 6 329 350 10.1146/annurev-food-022814-015429 25705934
Louis P. Scott K.P. Duncan S.H. Flint H.J. Understanding the Effects of Diet on Bacterial Metabolism in the Large Intestine J. Appl. Microbiol. 2007 102 1197 1208 10.1111/j.1365-2672.2007.03322.x
Tan J. McKenzie C. Potamitis M. Thorburn A.N. Mackay C.R. Macia L. The Role of Short-Chain Fatty Acids in Health and Disease Advances in Immunology Elsevier Amsterdam, The Netherlands 2014 Volume 121 91 119 978-0-12-800100-4
Bernalier-Donadille A. Fermentative Metabolism by the Human Gut Microbiota Gastroentérologie Clin. Biol. 2010 34 S16 S22 10.1016/S0399-8320(10)70016-6
Febvre H. Rao S. Gindin M. Goodwin N. Finer E. Vivanco J. Lu S. Manter D. Wallace T. Weir T. PHAGE Study: Effects of Supplemental Bacteriophage Intake on Inflammation and Gut Microbiota in Healthy Adults Nutrients 2019 11 666 10.3390/nu11030666 30897686
Kataoka K. The Intestinal Microbiota and Its Role in Human Health and Disease J. Med. Invest. 2016 63 27 37 10.2152/jmi.63.27 27040049
Gresse R. Chaucheyras-Durand F. Fleury M.A. Van de Wiele T. Forano E. Blanquet-Diot S. Gut Microbiota Dysbiosis in Postweaning Piglets: Understanding the Keys to Health Trends Microbiol. 2017 25 851 873 10.1016/j.tim.2017.05.004 28602521
Winter S.E. Winter M.G. Xavier M.N. Thiennimitr P. Poon V. Keestra A.M. Laughlin R.C. Gomez G. Wu J. Lawhon S.D. et al. Host-Derived Nitrate Boosts Growth of E. coli in the Inflamed Gut Science 2013 339 708 711 10.1126/science.1232467 23393266
Dufourny S. Everaert N. Lebrun S. Didelez M. Wavreille J. Froidmont E. Rondia P. Delcenserie V. Oxygen as a Key Parameter in In Vitro Dynamic and Multi-Compartment Models to Improve Microbiome Studies of the Small Intestine? Food Res. Int. 2020 133 109127 10.1016/j.foodres.2020.109127 32466899
Jakobsen R.R. Trinh J.T. Bomholtz L. Brok-Lauridsen S.K. Sulakvelidze A. Nielsen D.S. A Bacteriophage Cocktail Significantly Reduces Listeria Monocytogenes without Deleterious Impact on the Commensal Gut Microbiota under Simulated Gastrointestinal Conditions Viruses 2022 14 190 10.3390/v14020190
Grubb D.S. Wrigley S.D. Freedman K.E. Wei Y. Vazquez A.R. Trotter R.E. Wallace T.C. Johnson S.A. Weir T.L. PHAGE-2 Study: Supplemental Bacteriophages Extend Bifidobacterium Animalis Subsp. Lactis BL04 Benefits on Gut Health and Microbiota in Healthy Adults Nutrients 2020 12 2474 10.3390/nu12082474
Dissanayake U. Ukhanova M. Moye Z.D. Sulakvelidze A. Mai V. Bacteriophages Reduce Pathogenic Escherichia Coli Counts in Mice Without Distorting Gut Microbiota Front. Microbiol. 2019 10 1984 10.3389/fmicb.2019.01984
Pinto G. Shetty S.A. Zoetendal E.G. Gonçalves R.F.S. Pinheiro A.C. Almeida C. Azeredo J. Smidt H. An In Vitro Fermentation Model to Study the Impact of Bacteriophages Targeting Shiga Toxin-Encoding Escherichia Coli on the Colonic Microbiota NPJ Biofilms Microbiomes 2022 8 74 10.1038/s41522-022-00334-8
Tetz G.V. Ruggles K.V. Zhou H. Heguy A. Tsirigos A. Tetz V. Bacteriophages as Potential New Mammalian Pathogens Sci. Rep. 2017 7 7043 10.1038/s41598-017-07278-6
Tetz G. Tetz V. Bacteriophage Infections of Microbiota Can Lead to Leaky Gut in an Experimental Rodent Model Gut Pathog. 2016 8 33 10.1186/s13099-016-0109-1
Laforêt F. Antoine C. Lebrun S. Gonza I. Goya-Jorge E. Douny C. Duprez J.-N. Scippo M.-L. Taminiau B. Daube G. et al. Impact Assessment of VB_KpnP_K1-ULIP33 Bacteriophage on the Human Gut Microbiota Using a Dynamic In Vitro Model Viruses 2023 15 719 10.3390/v15030719 36992428