Profil

Taminiau Bernard

Département de sciences des denrées alimentaires (DDA) > Microbiologie des denrées alimentaires

Département des sciences biomédicales et précliniques

FARAH: Santé publique vétérinaire

See author's contact details
ORCID
0000-0001-6456-329X
Main Referenced Co-authors
Daube, Georges  (284)
Nezer, Carine (60)
Delhalle, Laurent  (55)
Rodriguez Diaz, Cristina  (49)
Delcenserie, Véronique  (43)
Main Referenced Keywords
microbiota (22); Clostridium difficile (19); Microbiology (18); Metagenomics (11); Animals (10);
Main Referenced Unit & Research Centers
FARAH - Fundamental and Applied Research for Animals and Health - ULiège [BE] (18)
FARAH. Santé publique vétérinaire - ULiège [BE] (8)
AgricultureIsLife , TERRA Teaching and Research Centre - TERRA (5)
FARAH. Productions animales durables - ULiège [BE] (2)
AgricultureIsLife, TERRA Teaching and Research Centre - TERRA (1)
Main Referenced Disciplines
Microbiology (129)
Veterinary medicine & animal health (84)
Food science (80)
Animal production & animal husbandry (17)
Agriculture & agronomy (12)

Publications (total 321)

The most downloaded
1619 downloads
Kergourlay, G., Taminiau, B., Daube, G., & Champomier Vergès, M.-C. (20 November 2015). Metagenomic insights into the dynamics of microbial communities in food. International Journal of Food Microbiology, 213, 31-39. doi:10.1016/j.ijfoodmicro.2015.09.010 https://hdl.handle.net/2268/199326

The most cited

205 citations (Scopus®)

Coton, M., Pawtowski, A., Taminiau, B., Burgaud, G., Deniel, F., Coulloumme-Labarthe, L., Fall, A., Daube, G., & Coton, E. (2017). Unraveling microbial ecology of industrial-scale Kombucha fermentations by metabarcoding and culture-based methods. FEMS Microbiology Ecology, 93 (5). doi:10.1093/femsec/fix048 https://hdl.handle.net/2268/211534

Gonza Quito, I. E., Goya-Jorge, E., Douny, C., Boutaleb, S., Taminiau, B., Daube, G., Scippo, M.-L., Louis, E., & Delcenserie, V. (April 2024). Food additives impair gut microbiota from healthy individuals and IBD patients in a colonic in vitro fermentation model. Food Research International, 182, 114157. doi:10.1016/j.foodres.2024.114157
Peer Reviewed verified by ORBi

Fastrès, A., Vangrinsven, E., Billen, F., Taminiau, B., Daube, G., & Clercx, C. (2024). Lung microbiota assessment in dogs with bronchomalacia. Journal of Veterinary Internal Medicine, 38 (1), 774.

Fastrès, A., Angebault Cécile, Taminiau, B., Daube, G., Botterel Françoise, & Clercx, C. (2024). Impact of DNA extraction methods and culture-independent approaches oncanine lung mycobiota analysis [Poster presentation]. 33th ECVIM-CA annual congress, Barcelona, Spain.
Peer reviewed

Sadek, A., Taminiau, B., Daube, G., Sapountzis, P., Chaucheyras-Durand, F., Castex, M., Coucheney, F., & Drider, D. (31 December 2023). Impact of Dietary Regime and Seasonality on Hindgut's Mycobiota Diversity in Dairy Cows. Microorganisms, 12 (1), 84. doi:10.3390/microorganisms12010084
Peer Reviewed verified by ORBi

Minutillo, R.* , Pirard, B.* , Fatihi, A., Cavaiuolo, M., Lefebvre, D., Gerard, A., Taminiau, B., Nia, Y., Hennekinne, J.-A., Daube, G., & Clinquart, A. (03 November 2023). The Enterotoxin Gene Profiles and Enterotoxin Production of Staphylococcus aureus Strains Isolated from Artisanal Cheeses in Belgium. Foods, 12 (21), 4019. doi:10.3390/foods12214019
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Martinez, E., Crevecoeur, S., THIRION, C., GRANDJEAN, J., Fall, P. A., Hayette, M.-P., Moutschen, M., Taminiau, B., Louis, E., & Daube, G. (10 October 2023). Gut Microbiota Associated with Clostridioides difficile Carriage in Three Clinical Groups (Inflammatory Bowel Disease, C. difficile Infection and Healthcare Workers) in Hospital Field. Microorganisms, 11 (10), 2527. doi:10.3390/microorganisms11102527
Peer Reviewed verified by ORBi

Antoine, C., Laforêt, F., Goya-Jorge, E., Gonza Quito, I. E., Lebrun, S., Douny, C., Duprez, J.-N., Scippo, M.-L., Taminiau, B., Daube, G., Fall A., Thiry, D., & Delcenserie, V. (October 2023). In Vitro Investigation of Phage Targeting E. coli K1 in Pregnant Donors' Intestinal Microbiota [Poster presentation]. Benefiq 2023, Canada.

Laforêt, F., Antoine, C., Lebrun, S., Gonza Quito, I. E., Goya-Jorge, E., Douny, C., Duprez, J.-N., Scippo, M.-L., Taminiau, B., Daube, G., Fall A., Thiry, D., & Delcenserie, V. (September 2023). Impact Assessment of vB_KpnP_K1-ULIP33 Bacteriophage on the Human Gut Microbiota Using a Dynamic In Vitro Model [Poster presentation]. 2nd BSVoM Symposium, Liege, Belgium.

Navez, M., Antoine, C., Laforêt, F., Thiry, D., Delcenserie, V., & Taminiau, B. (September 2023). In Vitro Effect on Piglet Gut Microbiota and In Vivo Assessment of Newly Isolated Bacteriophages against F18 Enterotoxigenic Escherichia coli (ETEC) [Poster presentation]. BSVoM, Liège, Belgium.
Peer reviewed

Jabri, H., Krings, S., Fall, P. A., Baurain, D., Daube, G., & Taminiau, B. (10 August 2023). Microbiota Profiling on Veterinary Faculty Restroom Surfaces and Source Tracking. Microorganisms, 11 (8), 2053. doi:10.3390/microorganisms11082053
Peer Reviewed verified by ORBi

Antoine, C., Laforêt, F., Goya-Jorge, E., Gonza Quito, I. E., Lebrun, S., Douny, C., Duprez, J.-N., Fall, A., Taminiau, B., Scippo, M.-L., Daube, G., Thiry, D.* , & Delcenserie, V.*. (24 June 2023). Phage Targeting Neonatal Meningitis E. coli K1 In Vitro in the Intestinal Microbiota of Pregnant Donors and Impact on Bacterial Populations. International Journal of Molecular Sciences, 24 (13), 10580. doi:10.3390/ijms241310580
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Antoine, C., Laforêt, F., Goya-Jorge, E., Gonza Quito, I. E., Lebrun, S., Douny, C., Duprez, J.-N., Scippo, M.-L., Taminiau, B., Daube, G., FALL Abdoulaye, Thiry, D., & Delcenserie, V. (June 2023). Phage targeting neonatal meningitis E. coli K1 in the intestinal microbiota of pregnant donors and impact on bacterial populations [Poster presentation]. 6th World Congress on Targeting Phage Therapy 2023, France.

Navez, M., Antoine, C., Laforêt, F., Goya-Jorge, E., Douny, C., Scippo, M.-L., Vermeersch, M., Duprez, J.-N., Daube, G., Mainil, J., Taminiau, B., Delcenserie, V., & Thiry, D. (25 April 2023). In Vitro Effect on Piglet Gut Microbiota and In Vivo Assessment of Newly Isolated Bacteriophages against F18 Enterotoxigenic Escherichia coli (ETEC). Viruses, 15 (5), 1053. doi:10.3390/v15051053
Peer Reviewed verified by ORBi

Vangrinsven, E., Fastrès, A., Taminiau, B., Billen, F., Daube, G., & Clercx, C. (15 April 2023). Assessment of the nasal microbiota in dogs with fungal rhinitis before and after cure and in dogs with chronic idiopathic rhinitis. BMC Microbiology, 23 (1), 104. doi:10.1186/s12866-023-02828-7
Peer Reviewed verified by ORBi

Imazaki, P. H., Taminiau, B., Fall, P. A., Elansary, M., Douny, C., Scippo, M.-L., Daube, G., & Clinquart, A. (29 March 2023). Oxidative Stability and Microbial Ecology of Fresh Beef with Extremely Long Shelf-Life. Journal of Food Processing and Preservation, 2023, 1-13. doi:10.1155/2023/5319266
Peer Reviewed verified by ORBi

Caballano-Infantes, E., Ho-Plágaro, A., López-Gómez, C., Martín-Reyes, F., Rodríguez-Pacheco, F., Taminiau, B., Daube, G., Garrido-Sánchez, L., Alcaín-Martínez, G., Andrade, R. J., García-Cortés, M., Lucena, M. I., García-Fuentes, E., & Rodriguez Diaz, C. (27 March 2023). Membrane Vesicles of Toxigenic Clostridioides difficile Affect the Metabolism of Liver HepG2 Cells. Antioxidants, 12 (4), 818. doi:10.3390/antiox12040818
Peer Reviewed verified by ORBi

Léonard, C., Picavet, P., Fontaine, J., Clercx, C., Taminiau, B., Daube, G., & Claeys, S. (11 March 2023). The Middle Ear Microbiota in Healthy Dogs Is Similar to That of the External Ear Canal. Veterinary Sciences, 10 (3), 216. doi:10.3390/vetsci10030216
Peer Reviewed verified by ORBi

Laforêt, F., Antoine, C., Lebrun, S., Gonza Quito, I. E., Goya-Jorge, E., Douny, C., Duprez, J.-N., Scippo, M.-L., Taminiau, B., Daube, G., Fall, A., Thiry, D.* , & Delcenserie, V.*. (10 March 2023). Impact Assessment of vB_KpnP_K1-ULIP33 Bacteriophage on the Human Gut Microbiota Using a Dynamic In Vitro Model. Viruses, 15 (3), 719. doi:10.3390/v15030719
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Rodriguez Diaz, C., Martín-Reyes, F., Taminiau, B., Ho-Plágaro, A., Camargo, R., Fernandez-Garcia, F., Pinazo-Bandera, J., Toro-Ortiz, J. P., Gonzalo, M., López-Gómez, C., Rodríguez-Pacheco, F., Rodríguez de Los Ríos, D., Daube, G., Alcain-Martinez, G., & García-Fuentes, E. (04 March 2023). The Metagenomic Composition and Effects of Fecal-Microbe-Derived Extracellular Vesicles on Intestinal Permeability Depend on the Patient's Disease. International Journal of Molecular Sciences, 24 (5), 4971. doi:10.3390/ijms24054971
Peer Reviewed verified by ORBi

Djebala, S., Coria, E., Munaut, F., Gille, L., Eppe, J., Moula, N., Taminiau, B., Daube, G., & Bossaert, P. (2023). Bacterial Contamination of the Surgical Site at the Time of Elective Caesarean Section in Belgian Blue Cows-Part 2: Identified by 16Sr DNA Amplicon Sequencing. Veterinary Sciences. doi:10.3390/vetsci10020094
Peer Reviewed verified by ORBi

Loublier, C., Taminiau, B., Heinen, J., Lecoq, L., Amory, H., Daube, G., & Cesarini, C. (17 January 2023). Evaluation of Bacterial Composition and Viability of Equine Feces after Processing for Transplantation. Microorganisms, 11 (2), 231. doi:10.3390/microorganisms11020231
Peer Reviewed verified by ORBi

Bernard, D., Taminiau, B., Medlej, M., Moutschen, M., Misset, B., Daube, G., & Rousseau, A.-F. (2023). Oropharyngeal bacterial microbiota analysis at hospital admission: a comparison of COVID-19 and cerebral vascular disease patients. Annals of Intensive Care, 13 (Suppl 1), 048.
Peer Reviewed verified by ORBi

Laforêt, F., Antoine, C., Lebrun, S., Gonza Quito, I. E., Goya-Jorge, E., Douny, C., Duprez, J.-N., Scippo, M.-L., Taminiau, B., Daube, G., Fall, A., Thiry, D., & Delcenserie, V. (2023). Phage Efficacy Assessment for Decolonizing Hyper-Virulent Klebsiella pneumoniae K1 ST23 in the Intestinal Microbiota : An In Vitro Study using the SHIME® Model [Paper presentation]. 10th FARADAY.

Djebala, S., Coria, E., Munaut, F., Gille, L., Eppe, J., Moula, N., Taminiau, B., Daube, G., & Bossaert, P. (09 December 2022). Bacterial Contamination of the Surgical Site at the Time of Elective Caesarean Section in Belgian Blue Cows-Part 1: Identified by Bacterial Culture. Veterinary Sciences, 9 (12). doi:10.3390/vetsci9120687
Peer Reviewed verified by ORBi

Neyrinck, A., Rodriguez, J., Taminiau, B., Herpin, F., Cani, P., Daube, G., Bindels, L., & Delzenne, N. (24 November 2022). Constipation Mitigation by Rhubarb Extract in Middle-Aged Adults Is Linked to Gut Microbiome Modulation: A Double-Blind Randomized Placebo-Controlled Trial. International Journal of Molecular Sciences, 23 (23), 14685. doi:10.3390/ijms232314685
Peer Reviewed verified by ORBi

Balzani, L., Orban, P., Taminiau, B., Daube, G., & Brouyère, S. (14 September 2022). A multi-tracer approach for the identification of different pollution sources in sub-urban groundwater catchments [Poster presentation]. International Interdisciplinary Conference Land Use and Water Quality - LuWQ2022, Maastricht, Netherlands.
Peer reviewed

Martinez, E., Rodriguez, C., Crevecoeur, S., Lebrun, S., Delcenserie, V., Taminiau, B., & Daube, G. (2022). Impact of environmental conditions and gut microbiota on the in vitro germination and growth of Clostridioides difficile. FEMS Microbiology Letters. doi:10.1093/femsle/fnac087
Peer Reviewed verified by ORBi

Léonard, C., Thiry, D., Taminiau, B., Daube, G., & Fontaine, J. (18 July 2022). External Ear Canal Evaluation in Dogs with Chronic Suppurative Otitis Externa: Comparison of Direct Cytology, Bacterial Culture and 16S Amplicon Profiling. Veterinary Sciences, 9 (7), 366. doi:10.3390/vetsci9070366
Peer Reviewed verified by ORBi

Martinez, E., Taminiau, B., Rodriguez, C., & Daube, G. (08 July 2022). Gut Microbiota Composition Associated with Clostridioides difficile Colonization and Infection. Pathogens, 11 (7), 781. doi:10.3390/pathogens11070781
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Taminiau, B., García-García, A., Cueto, A., Robles-Díaz, M., Ortega-Alonso, A., Martín-Reyes, F., Daube, G., Sanabria-Cabrera, J., Jimenez-Perez, M., Isabel Lucena, M., Andrade, R. J., García-Fuentes, E., & García-Cortes, M. (2022). Microbiota diversity in nonalcoholic fatty liver disease and in drug-induced liver injury. Pharmacological Research, 106348. doi:10.1016/j.phrs.2022.106348
Peer Reviewed verified by ORBi

Goya-Jorge, E., Gonza Quito, I. E., Bondue, P., Douny, C., Taminiau, B., Daube, G., Scippo, M.-L., & Delcenserie, V. (30 June 2022). Human Adult Microbiota in a Static Colon Model: AhR Transcriptional Activity at the Crossroads of Host–Microbe Interaction. Foods, 11 (13), 1946. doi:10.3390/foods11131946
Peer Reviewed verified by ORBi

Boumenir, M., Hornick, J.-L., Taminiau, B., Daube, G., Brotcorne, F., Iguer-Ouada, M., & Moula, N. (2022). La première analyse du microbiote intestinal du macaque de Barbarie révèle des différences entre un groupe sauvage et un groupe approvisionné dans la région de Bejaia, Algérie. In Book of abstracts- OHID 2022 (pp. 23). Lille, France: Université de Lille.
Peer reviewed

Gallait, C., Taminiau, B., Crevecoeur, S., Gerard, A., Daube, G.* , & Sindic, M.*. (2022). Study of a new strain of Fusobacterium which could inhibit L. monocytogenes in Herve cheese. In OHID Book of Abracts (pp. 47). Polytech Lille, Villeneuve d’Ascq, France.
Editorial reviewed
* These authors have contributed equally to this work.

Detilleux, J., Moula, N., Dawans, E., Taminiau, B., Daube, G., & Leroy, P. (March 2022). A Probabilistic Structural Equation Model to Evaluate Links between Gut Microbiota and Body Weights of Chicken Fed or Not Fed Insect Larvae. Biology, 11 (3), 357. doi:10.3390/biology11030357
Peer Reviewed verified by ORBi

Pouille, C. L., Ouaza, S., Roels, E., Behra, J., Tourret, M., Molinié, R., Fontaine, J.-X., Mathiron, D., Gagneul, D., Taminiau, B., Daube, G., Ravallec, R., Rambaud, C., Hilbert, J.-L., Cudennec, B., & Lucau-Danila, A. (March 2022). Chicory: Understanding the Effects and Effectors of This Functional Food. Nutrients, 14 (5), 957. doi:10.3390/nu14050957
Peer Reviewed verified by ORBi

Lebeau, A.* , Bruyère, D.* , RONCARATI, P., Peixoto, P., Hervouet, E., COBRAIVILLE, G., Taminiau, B., Masson, M., Gallego, C., Mazzucchelli, G., Smargiasso, N., Fleron, M., Baiwir, D., Hendrick, E., Pilard, C., Lerho, T., Reynders, C., Ancion, M., GREIMERS, R., ... Herfs, M. (28 February 2022). HPV infection alters vaginal microbiome through down-regulating host mucosal innate peptides used by Lactobacilli as amino acid sources. Nature Communications, 13 (1), 1076. doi:10.1038/s41467-022-28724-8
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Boumenir, M., Hornick, J.-L., Taminiau, B., Daube, G., Brotcorne, F., Iguer-Ouada, & Moula, N. (2022). First Descriptive Analysis of the Faecal Microbiota ofWild and Anthropized Barbary Macaques (Macaca sylvanus) in the Region of Bejaia, Northeast Algeria. Biology. doi:10.3390/biology11020187
Peer Reviewed verified by ORBi

El Otmani, S., Chebli, Y., Taminiau, B., Chentouf, M., Hornick, J.-L., & Cabaraux, J.-F. (2022). Rumen microbial community and meet quality of goat kids under cactus cladodes inclusion [Poster presentation]. 73rd Annual Meeting of the European Federation of Animal Science, Porto, Portugal.
Editorial reviewed

Navez, M., Antoine, C., Laforêt, F., Duprez, J.-N., Delcenserie, V., Taminiau, B., & Thiry, D. (2022). Evaluation de bactériophages actifs contre des souches d’Escherichia coli entérotoxinogènes responsables de diarrhées chez les porcelets au sevrage [Paper presentation]. CIFMIA.

Loublier, C., Taminiau, B., Amory, H., Daube, G., & Cesarini Latorre, C. (19 November 2021). Freezing does not impact equine fecal bacterial viability after a specific fecal pre-transplantation processing method: a step towards an equine stool bank [Paper presentation]. Farah Day.

Martinez, E., Doumont, L., Taminiau, B., & Daube, G. (19 November 2021). Clostridioides difficile virulence genes expression in an insert plate model [Poster presentation]. Farah Day.

Coton, M., Deniel, F., Mounier, J., Joubrel, R., Robieu, E., Pawtowski, A., Jeuge, S., Taminiau, B., Daube, G., Coton, E., & Frémaux, B. (November 2021). Microbial Ecology of French Dry Fermented Sausages and Mycotoxin Risk Evaluation During Storage. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.737140
Peer Reviewed verified by ORBi

Léonard, C., Claeys, S., Picavet, P., Taminiau, B., Daube, G., & Fontaine, J. (September 2021). In healthy experimental beagle dogs, the middle ear microbiota is similar to that of the external ear canal [Paper presentation]. European Veterinary Dermatology Congress.

Balzani, L., Orban, P., Collier, L., Wildemeersch, S., Taminiau, B., Deliège, J.-F., Everbecq, E., & Brouyère, S. (September 2021). A new methodological approach for the protection of peri-urban groundwater catchments [Poster presentation]. 48th IAH CONGRESS (BRUXELLES), Bruxelles, Belgium.

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., & Daube, G. (18 July 2021). Organic farming practices versus conventional production: associated pathogens and food safety concerns in a sustainable development [Poster presentation]. IAFP 2021 Annual Meeting, Phoenix, United States.

Rodriguez Diaz, C., Taminiau, B., Garcia-Fuentes, E., Korsak Koulagenko, N., & Daube, G. (18 July 2021). Presence of Clostridioides difficile in fresh mushrooms at retail stores [Poster presentation]. IAFP 2021 Annual Meeting, Phoenix, United States.

Gerard, A., El-Hajjaji, S., Burteau, S., Fall, P. A., Pirard, B., Taminiau, B., Daube, G., & Sindic, M. (13 June 2021). Study of the microbial diversity of a panel of Belgian artisanal cheeses associated with challenge studies for Listeria monocytogenes. Food Microbiology, 100, 103861. doi:10.1016/j.fm.2021.103861
Peer Reviewed verified by ORBi

Loublier, C., Heinen, J., Taminiau, B., Lecoq, L., Amory, H., Daube, G., & Cesarini Latorre, C. (June 2021). Microbial composition and viability in equine feces after processing for transplantation [Poster presentation]. 2021 Virtual ACVIM Forum.

Cirillo, A., Huart, J., Taminiau, B., Descy, J., Saint-Remy, A., Daube, G., KRZESINSKI, J.-M., MELIN, P., JOURET, F., & De Tullio, P. (26 May 2021). Human Stool Metabolome Differs upon 24 h Blood Pressure Levels and Blood Pressure Dipping Status: A Prospective Longitudinal Study [Poster presentation]. CIRM day.

Léonard, C., Taminiau, B., Ngo, J., Fantini, O., Daube, G., & Fontaine, J. (2021). Preventive use of a topical anti-inflammatory glucocorticoid in atopic dogs without clinical sign of otitis does not affect ear canal microbiota and mycobiota. Veterinary Dermatology. doi:10.1111/vde.12977
Peer Reviewed verified by ORBi

Cairo, P. L. G., Nogueira, S. S. C., Altino, V. S., Vandenheede, M., Schroyen, M., Taminiau, B., Daube, G., Gross, E., Bindelle, J., & Nogueira-Filho, S. L. G. (2021). Individual differences in behaviour and gut bacteria are associated in collared peccary (Mammalia, Tayassuidae). Journal of Applied Microbiology. doi:10.1111/jam.15133
Peer Reviewed verified by ORBi

HUART, J.* , Cirillo, A.* , Taminiau, B., DESCY, J., SAINT-REMY, A., Daube, G., KRZESINSKI, J.-M., MELIN, P., De Tullio, P.* , & JOURET, F.*. (29 April 2021). Human Stool Metabolome Differs upon 24 h Blood Pressure Levels and Blood Pressure Dipping Status: A Prospective Longitudinal Study. Metabolites, 11 (5), 282. doi:10.3390/metabo11050282
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Rodriguez Diaz, C., Mith, H., Taminiau, B., Korsak Koulagenko, N., Clinquart, A., & Daube, G. (27 April 2021). In vitro study of antimicrobial activity of essential oils and their components against the main Clostridioides difficile PCR-ribotypes isolated in Belgium [Poster presentation]. IAFP European Congress.

Pirard, B., Crevecoeur, S., Fall, P., Lausberg, P., Taminiau, B., & Daube, G. (2021). Potential resident bacterial microbiota in udder tissues of culled cows sampled in abattoir. Research in Veterinary Science. doi:10.1016/j.rvsc.2021.03.012
Peer Reviewed verified by ORBi

Wimmer-Scherr, C., Taminiau, B., Renaud, B., van loon, G., Palmers, K., Votion, D., Amory, H., Daube, G., & Cesarini Latorre, C. (15 February 2021). Comparison of Fecal Microbiota of Horses Suffering from Atypical Myopathy and Healthy Co-Grazers. Animals, 11 (506). doi:10.3390/ani11020506
Peer reviewed

El Otmani, S., Chebli, Y., Taminiau, B., Chentouf, M., Hornick, J.-L., & Cabaraux, J.-F. (2021). Effect of olive cake and cactus cladodes incorporation in Goat kid's diet on the rumen microbial community profile and meat fatty acid composition. Biology, (10). doi:10.3390/biology10121237
Peer Reviewed verified by ORBi

Vangrinsven, E., Fastrès, A., Taminiau, B., Billen, F., Daube, G., & Clercx, C. (2021). Variations in facial conformation are associated with differences in nasal microbiota in healthy dogs. BMC Veterinary Research, 17 (1), 100. doi:10.1186/s12917-021-03055-w
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Mith, H., Taminiau, B., Bouchafa, L., Van Broeck, J., Soumillon, K., Ngyuvula, E., Garcia-Fuentes, E., Korsak Koulagenko, N., Delmée, M., & Daube, G. (2021). First isolation of Clostrioides difficile from smoked and dried freshwater fish in Cambodia. Food Control. doi:10.1016/j.foodcont.2021.107895
Peer Reviewed verified by ORBi

Neckermann, K., Claus, G., De Baere, S., Antonissen, G., Lebrun, S., Gemmi, C., Taminiau, B., Douny, C., Scippo, M.-L., Schatzmayr, D., Gathumbi, J., Uhlig, S., Croubels, S., & Delcenserie, V. (2021). The efficacy and effect on gut microbiota of an aflatoxin binder and a fumonisin esterase using an in vitro simulator of the human intestinal microbial ecosystem (SHIME®). Food Research International, 145, 110395. doi:10.1016/j.foodres.2021.110395
Peer Reviewed verified by ORBi

Zhang, H., Majdeddin, M., Gaublomme, D., Taminiau, B., Boone, M., Elewaut, D., Daube, G., Josipovic, I., Zhang, K., & Michiels, J. (2021). 25-hydroxycholecalciferol reverses heat induced alterations in bone quality in finisher broilers associated with effects on intestinal integrity and inflammation. Journal of Animal Science and Biotechnology, 12 (1), 104. doi:10.1186/s40104-021-00627-6
Peer Reviewed verified by ORBi

Bendjeddou, K., Hamma-Faradji, S., Meddour, A. A., Belguesmia, Y., Cudennec, B., Bendali, F., Daube, G., Taminiau, B., & Drider, D. (2021). Gut microbiota, body weight and histopathological examinations in experimental infection by methicillin-resistant Staphylococcus aureus: antibiotic versus bacteriocin. Beneficial Microbes, 12 (3), 295-305. doi:10.3920/BM2020.0155
Peer Reviewed verified by ORBi

Abekhti, A., Taminiau, B., Nezer, C., Hiligsman, S., Mabrouk, K., & Daube, G. (2021). Metabarcoding analysis and fermentation performance of the dominant fungal microbiota associated with the Algerian traditional date product "Btana". International microbiology : the official journal of the Spanish Society for Microbiology. doi:10.1007/s10123-021-00166-0
Peer reviewed

Neyrinck, A., Rodriguez, J., Taminiau, B., Amadieu, C., Herpin, F., Allaert, F. A., Cani, P., Daube, G., Bindels, L., & Delzenne, N. (2021). Improvement of gastrointestinal discomfort and inflammatory status by a synbiotic in middle-aged adults: a double-blind randomized placebo-controlled trial. Scientific Reports, 11, 2627. doi:10.1038/s41598-020-80947-1
Peer Reviewed verified by ORBi

Delhalle, L., Taminiau, B., Fall, A., Burteau, S., Fastrez, S., Ballesteros, M., & Daube, G. (2020). Tracing back food spoiling bacteria during enzymatic cleaning with 16S rDNA metagenetic. In Journal off Food protection -Protecting the gobal supply (International Association for Food protection, pp. 35).
Peer reviewed

Rodriguez Diaz, C., Taminiau, B., Martin-Reyers, F., Ho-Plagaro, A., Blanc, P., Alcain-Martinez, G., Garcia-Fuentes, E., & Daube, G. (28 October 2020). Metagenetic approach to explore the gut microbiota and their secreted extracellular vesicles in diarrheic and healthy patients [Poster presentation]. FEMS Online Conference on Microbiology 2020, Belgrade, Serbia.

Rodriguez Diaz, C., Mith, H., Taminiau, B., Bouchafa, L., Van Broeck, J., Soumission, K., Ngyuvula, E., Garcia-Fuentes, E., Korsak Koulagenko, N., Delmée, M., & Daube, G. (28 October 2020). First isolation of Clostridioides difficile from smoked and dried freshwater fish in Cambodia [Poster presentation]. FEMS Online Conference on Microbiology, Belgrade, Serbia.

Rodriguez Diaz, C., Taminiau, B., Martin-Reyes, F., Ho-Plagaro, A., Blanc, P., Alcain-Martinez, G., Garcia-Fuentes, E., & Daube, G. (21 October 2020). Metagenetic approach to explore the gut microbiota and their secreted extracellular vesicles in diarrheic and healthy patients [Poster presentation]. ICDS Microbiology 2020 Online, Fès, Morocco.

Rodriguez Diaz, C., Mith, H., Taminiau, B., Bouchafa, L., Van Broeck, J., Soumission, K., Ngyuvula, E., Garcia-Fuentes, E., Korsak Koulagenko, N., Delmée, M., & Daube, G. (21 October 2020). First isolation of Clostridioides difficile from smoked and dried freshwater fish in Cambodia [Poster presentation]. ICDS Microbiology 2020 Online, Fès, Morocco.

Neyrinck, A. M., Rodriguez, J., Taminiau, B., Daube, G., Cani, P., Bindels, L., & Delzenne, N. M. (September 2020). Intérêt des prébiotiques dans les désordres métaboliques associés au surpoids et au vieillissement [Poster presentation]. Congrès annuel de la Société francophone du diabète, Bruxelles, Belgium.

Jergeay, V., Moyse, E., Gomez Fernandez Blanco, C., Leterrier, M., Farnir, F., Peeters, D., Daube, G., Jeusette, I., Taminiau, B., & Diez, M. (September 2020). Interactions between microbiota, diet and obesity in client-owned dogs: preliminary results [Poster presentation]. ESVCN 2020 Virtual.

Delhalle, L., Taminiau, B., Fastrez, S., Fall, A., Ballesteros, M., Burteau, S., & Daube, G. (11 August 2020). Evaluation of enzymatic cleaning on food processing installations and food products bacterial microflora. Frontiers in Microbiology, 11, 1827. doi:10.3389/fmicb.2020.01827
Peer Reviewed verified by ORBi

Nikolenko, O., Morana, C., Taminiau, B., Borges, A., Robert, T., Goderniaux, P., Duvivier, M., & Brouyère, S. (May 2020). Vertical interval dynamics of greenhouse gases in groundwater (Hesbaye chalk aquifer, Belgium) [Paper presentation]. EGU General Assembly. doi:10.5194

Fastrès, A., Roels, E., Vangrinsven, E., Taminiau, B., Jabri, H., Bolen, G., Merveille, A.-C., Tutunaru, A.-C., Moyse, E., Daube, G., & Clercx, C. (April 2020). Assessment of the lung microbiota in dogs: influence of the type of breed, living conditions and canine idiopathic pulmonary fibrosis. BMC Microbiology, 20 (84), 1-13. doi:10.1186/s12866-020-01784-w
Peer Reviewed verified by ORBi

Gerard, A., Ô, Q. M., Taminiau, B., Daube, G., & Sindic, M. (31 January 2020). Characterization of the microbial diversity of Belgian artisanal cheese using metagenetics [Poster presentation]. 25th National Symposium on Applied Biological Sciences.

Cauchie, E., Delhalle, L., Baré, G., Tahiri, A., Taminiau, B., Korsak Koulagenko, N., Burteau, S., Fall, P. A., Farnir, F., & Daube, G. (2020). Modelling the growth and interaction between Brochothrix thermosphacta, Pseudomonas spp. and Leuconostoc gelidum in minced pork meat samples. Frontiers in Microbiology. doi:10.3389/fmicb.2020.00639
Peer Reviewed verified by ORBi

Bondue, P., Lebrun, S., Taminiau, B., Everaert, N., LaPointe, G., Crevecoeur, S., Daube, G., & Delcenserie, V. (2020). A toddler SHIME® model to study microbiota of young children. FEMS Microbiology Letters, 367 (16). doi:10.1093/femsle/fnaa135
Peer Reviewed verified by ORBi

Cauchie, E., Delhalle, L., Taminiau, B., Tahiri, A., Korsak Koulagenko, N., Burteau, S., Fall, A. P., Farnir, F., Baré, G., & Daube, G. (2020). Assessment of spoilage bacterial communities in food wrap and modified atmospheres-packed minced pork meat samples by 16S rDNA metagenetic analysis. Frontiers in Microbiology, 10. doi:10.3389/fmicb.2019.03074
Peer Reviewed verified by ORBi

Rodriguez, C., Taminiau, B., Garcia-Fuentes, E., Daube, G., & Korsak Koulagenko, N. (2020). Listeria monocytogenes dissemination in farming and primary production: Sources, shedding and control measures. Food Control. doi:10.1016/j.foodcont.2020.107540
Peer Reviewed verified by ORBi

Duthoo, E., Krings, S., Daube, G., Leroy, F., Taminiau, B., Heyndrickx, M., & DE Reu, K. (2020). Monitoring of Hygiene in Institutional Kitchens in Belgium. Journal of Food Protection, 305-314. doi:10.4315/0362-028X.JFP-19-202
Peer Reviewed verified by ORBi

Ouarabi, L., Drider, D., Taminiau, B., Daube, G., Bendali, F., & Lucau-Danila, A. (2020). Vaginal Microbiota: Age Dynamic and Ethnic Particularities of Algerian Women. Microbial Ecology. doi:10.1007/s00248-020-01606-6
Peer Reviewed verified by ORBi

Fastrès, A., Canonne-Guibert, M., Taminiau, B., Billen, F., Garigliany, M.-M., Daube, G., & Clercx, C. (2020). Analysis of the lung microbiota in dogs with Bordetella bronchiseptica infection and correlation with culture and quantitative polymerase chain reaction. BMC Veterinary Research, 51 (46), 1-12. doi:10.1186/s13567-020-00769-x
Peer reviewed

Nguyen Cong, O., Taminiau, B., Pham Kim, D., Daube, G., Nguyen Van, G., Bindelle, J., Papa Abdulaye, F., Vu Dinh, T., & Hornick, J.-L. (2020). Effect of increasing levels of rice distiller’s by-product on growth performance, nutrient digestibility, blood profile and colonic microbiota of weaned piglets. Asian-Australasian Journal of Animal Sciences. doi:10.5713/ajas.19.0278
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Romero, E., Garrido-Sanchez, L., Alcain-Martinez, G., Andrade, R. J., Taminiau, B., Daube, G., & Garcia-Fuentes, E. (2020). Microbiota insights in Clostridium difficile infection and inflammatory bowel disease. Gut Microbes, 1-25. doi:10.1080/19490976.2020.1725220
Peer Reviewed verified by ORBi

Bondue, P., Lebrun, S., Taminiau, B., Everaert, N., laPointe, G., Hendrick, C., Gaillez, J., Crevecoeur, S., Daube, G., & Delcenserie, V. (2020). Effect of Bifidobacterium crudilactis and 3′-sialyllactose on the toddler microbiota using the SHIME® model. Food Research International. doi:10.1016/j.foodres.2020.109755
Peer Reviewed verified by ORBi

Cerri, S., Taminiau, B., Haché-Carré de Lusancay, A., Lecoq, L., Amory, H., Daube, G., & Cesarini Latorre, C. (2020). Effect of oral administration of omeprazole on the microbiota of the gastric glandular mucosa and feces of healthy horses. Journal of Veterinary Internal Medicine, 34, 2727–2737. doi:10.1111/jvim.15937
Peer Reviewed verified by ORBi

Apper, E., Privet, L., Taminiau, B., Le Bourgot, C., Svilar, L., Martin, J.-C., & Diez, M. (2020). Relationships Between Gut Microbiota, Metabolome, Body Weight, and Glucose Homeostasis of Obese Dogs Fed with Diets Differing in Prebiotic and Protein Content. Microorganisms, 8 (4). doi:10.3390/microorganisms8040513
Peer Reviewed verified by ORBi

El Otmani, S., Chebli, Y., Taminiau, B., Chentouf, M., Hornick, J.-L., & Cabaraux, J.-F. (2020). Effect of alternative feed resources on rumen liquor microbiota of goat kids: olive cake and cactus cladodes. In Proccedings of the 7th FARAH Day.
Peer reviewed

Fastrès, A., Canonne-Guibert, M., Taminiau, B., Billen, F., Garigliany, M.-M., Daube, G., & Clercx, C. (08 November 2019). Analysis of the lung microbiota in dogs with Bordetella bronchiseptica infection and correlation with culture and quantitative polymerase chain reaction [Poster presentation]. 6th FARAH DAY, Liège, Belgium.

Fastrès, A., Taminiau, B., Vangrinsven, E., Tutunaru, A.-C., Moyse, E., Farnir, F., Daube, G., & Clercx, C. (November 2019). Effect of an antimicrobial drug on lung microbiota in healthy dogs. Heliyon, 5 (11). doi:10.1016/J.HELIYON.2019.E02802
Peer Reviewed verified by ORBi

Fastrès, A., Vangrinsven, E., Taminiau, B., Tutunaru, A.-C., Jabri, H., Daube, G., & Clercx, C. (23 October 2019). Assessment of lung microbiota in healthy dogs: impact of breed and living conditions. Journal of Veterinary Internal Medicine, 34, 361.
Peer Reviewed verified by ORBi

Delhalle, L., Taminiau, B., Fall, A., Burteau, S., Ballesteros, M., & Daube, G. (03 October 2019). Evaluation of enzymatic cleaning in a processed food industry [Poster presentation]. Conference of food microbiology, Brussels, Belgium.

Léonard, C., Taminiau, B., Daube, G., Ngo, J., & Fontaine, J. (September 2019). Preventive use of a topical anti-inflammatory glucocorticoid in atopic dogs without clinical sign of otitis does not affect ear canal microbiota and mycobiota [Paper presentation]. European Veterinary Dermatology Congress, Liverpool, United Kingdom.

Fastrès, A., Roels, E., Vangrinsven, E., Taminiau, B., Jabri, H., Bolen, G., Tutunaru, A.-C., Daube, G., & Clercx, C. (September 2019). ASSESSMENT OF THE LUNG MICROBIOTA IN HEALTHY DOGS AND DOGS WITH CANINE IDIOPATHIC PULMONARY FIBROSIS: IMPACT OF BREED AND DISEASE [Paper presentation]. 37th Annual VCRS Symposium, Caen, France.

Fastrès, A., Canonne, A. M., Taminiau, B., Billen, F., Garigliany, M.-M., Daube, G., & Clercx, C. (September 2019). ANALYSIS OF THE LUNG MICROBIOTA IN DOGS WITH BORDETELLA BRONCHISEPTICA INFECTION AND CORRELATION WITH CULTURE AND QUANTITATIVE POLYMERASE CHAIN REACTION [Paper presentation]. 37th Annual VCRS Symposium, Caen, France.

Nguyen Cong, O., Taminiau, B., Bindelle, J., Vu Dinh, T., & Hornick, J.-L. (2019). Colonic microbiota of weanling piglets fed diets containing rice distiller’s by-product. In Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science (1ère éd, pp. 311). Wageningen, Netherlands: Wageningen Academic. doi:10.3920/978-90-8686-890-2
Peer reviewed

Huart, J.* , Leenders, J.* , Taminiau, B., Descy, J., Saint-Remy, A., Daube, G., KRZESINSKI, J.-M., MELIN, P., De Tullio, P.* , & Jouret, F.*. (2019). Gut Microbiota and Fecal Levels of Short-Chain Fatty Acids Differ Upon 24-Hour Blood Pressure Levels in Men. Hypertension. doi:10.1161/HYPERTENSIONAHA.118.12588
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Delhalle, L., Taminiau, B., Fall, A., Burteau, S., Fastrez, S., Ballesteros, M., & Daube, G. (2019). Evaluation of enzymatic cleaning on the microbial flora of installations and the food products in a processed food industry. In IAFP 2019 -Proceedings (Journal of Food Protection supplement, pp. 20-21). International Association for Food Protection.
Peer reviewed

Nguyen Cong, O., Taminiau, B., Pham Kim, D., Do Duc, L., Moula, N., Nguyen Thi, H., Nguyen Hoang, T., Vu Dinh, T., Daube, G., Bindelle, J., & Hornick, J.-L. (2019). Growth performance, carcass quality characteristics and colonic microbiota profiles in finishing pigs fed diets with different inclusion levels of rice distillers’ by‐product. Animal Science Journal. doi:10.1111/asj.13229
Peer Reviewed verified by ORBi

Komagbe, G., Sessou, P., Dossa, F., Sossa-Minou, P., Taminiau, B., Azokpota, P., Korsak Koulagenko, N., Daube, G., & Farougou, S. (2019). Assessment of the microbiological quality of beverages sold in collective cafes on the campuses of the University of Abomey-Calavi, Benin Republic. Journal of Food safety and Hygiene, 5 (2).
Peer reviewed

François, A.-C., Renaud, B., Delcenserie, V., Lebrun, S., Taminiau, B., Cesarini Latorre, C., Gustin, P., & Votion, D. (2019). Modification of gut microbiota in response to the toxin of equine atypical myopathy: a preliminary study using a dynamic human intestinal simulator [Poster presentation]. 9 th European Equine Health & Nutrition Congress, Utrecht, Netherlands.
Editorial reviewed

Rodriguez, C., Taminiau, B., Bouchafa, L., Romijn, S., Van Broeck, J., Delmée, M., Clercx, C., & Daube, G. (2019). Clostridium difficile beyond stools: dog nasal discharge as a possible new vector of bacterial transmission. Heliyon. doi:10.1016/j.heliyon.2019.e01629
Peer Reviewed verified by ORBi

Neyrinck, A. M., Catry, E., Taminiau, B., Cani, P. D., Bindels, L. B., Daube, G., Dessy, C., & Delzenne, N. M. (2019). Chitin-glucan and pomegranate polyphenols improve endothelial dysfunction. Scientific Reports, 9 (1), 14150. doi:10.1038/s41598-019-50700-4
Peer Reviewed verified by ORBi

Dufourny, S., Everaert, N., Lebrun, S., Douny, C., Scippo, M.-L., Li, B., Taminiau, B., Marzorati, M., Wavreille, J., Froidmont, E., Rondia, P., & Delcenserie, V. (2019). Baby-SPIME: A dynamic in vitro piglet model mimicking gut microbiota during the weaning process. Journal of Microbiological Methods, 167, 105735. doi:10.1016/j.mimet.2019.105735
Peer Reviewed verified by ORBi

De Maesschalck, C., Eeckhaut, V., Maertens, L., De Lange, L., Marchal, L., Daube, G., Dewulf, J., Haesebrouck, F., Ducatelle, R., Taminiau, B., & Van Immerseel, F. (2019). Amorphous cellulose feed supplement alters the broiler caecal microbiome. Poultry Science. doi:10.3382/ps/pez090
Peer Reviewed verified by ORBi

De Witte, C., Demeyere, K., De Bruyckere, S., Taminiau, B., Daube, G., Ducatelle, R., Meyer, E., & Haesebrouck, F. (2019). Characterization of the non-glandular gastric region microbiota in Helicobacter suis-infected versus non-infected pigs identifies a potential role for Fusobacterium gastrosuis in gastric ulceration. Veterinary Research, 50 (1), 39. doi:10.1186/s13567-019-0656-9
Peer Reviewed verified by ORBi

François, A.-C., Renaud, B., Delcenserie, V., Lebrun, S., Taminiau, B., Douny, C., Gustin, P., & Votion, D. (2019). The modification of microbiota after intoxication with hypoglycin A: preliminary study [Poster presentation]. 6th FARAH-Day, Liège, Belgium.
Editorial reviewed

Rodriguez, C., Bouchafa, L., Soumillion, K., Ngyuvula, E., Taminiau, B., Van Broeck, J., Delmee, M., & Daube, G. (2019). Seasonality of Clostridium difficile in the natural environment. Transboundary and Emerging Diseases. doi:10.1111/tbed.13301
Peer Reviewed verified by ORBi

Kalala Bolokango, G., Kambashi, B., Taminiau, B., Schroyen, M., Everaert, N., Beckers, Y., Richel, A., Njeumen Lemotio, G. P., Pachikian, B., Neyrinck, A. M., Hiel, S., Rodriguez, J., Fall, P. A., Daube, G., Thissen, J.-P., Delzenne, N. M., & Bindelle, J. (2019). In vitro approach to evaluate the fermentation pattern of inulin-rich food in obese individuals. The British journal of nutrition, 1-19. doi:10.1017/S0007114519002915
Peer reviewed

Cesarini Latorre, C., Votion, D., BOEMER, F., cerri, S., Lefère, L., Palmers, K., van Loon, G., Amory, H., Daube, G., & Taminiau, B. (09 November 2018). Correlation between faecal microbiota and serum levels of Hypoglycin A and MCPA-carnitine in horses with atypical myopathy [Paper presentation]. 11th European College of Equine Internal Medicine congress.

Wimmer-Scherr, C., Votion, D., BOEMER, F., Cerri, S., Lefère, L., Palmers, K., van Loon, G., Amory, H., Daube, G., Taminiau, B., & Cesarini Latorre, C. (2018). Atypical Myopathy: is there a relationship between serum hypoglycin A and MCPACarnitin levels and the composition of faecal microbiota? In Proceedings 5th FARAH-Day (pp. 29).
Peer reviewed

Fastrès, A., Vangrinsven, E., Tutunaru, A.-C., Moyse, E., Farnir, F., Taminiau, B., Daube, G., & Clercx, C. (2018). Effect of antimicrobial drug on lung microbiota in healthy dogs. Journal of Veterinary Internal Medicine.

Duthoo, E., Krings, S., Daube, G., Taminiau, B., Heyndrickx, M., & De Reu, K. (October 2018). Monitoring of hygiene in institutional kitchens in Belgium [Poster presentation]. 23th conference on Food Microbiology, Bruxelles, Belgium.

Fastrès, A., Roels, E., Taminiau, B., Rajamakki, M., Daube, G., & Clercx, C. (16 September 2018). Analysis of the lung microbiota in healthy dogs and in canine idiopathic pulmonary fibrosis, a possible spontaneous model for human IPF [Poster presentation]. ERS international congress, Paris, France.

ngo, J., Taminiau, B., Daube, G., Fall, P. A., & Fontaine, J. (August 2018). Ear canal microbiota – a comparison between healthy dogs and atopic dogs without clinical signs of otitis externa. Veterinary Dermatology, 29, 425–e140. doi:10.1111/vde.12674
Peer Reviewed verified by ORBi

Pirard, B., Crevecoeur, S., Taminiau, B., & Daube, G. (19 June 2018). Potential resident bacterial microbiota in udder tissues of culled cows sampled in abattoir [Poster presentation]. Adebiotech-MBIO 2018, Paris, France.

Krings, S., Duthoo, E., De Reu, K., Taminiau, B., Heyndrickx, M., & Daube, G. (19 June 2018). Use of propidium monoazide followed by 16S rDNA sequencing in order to discriminate live and dead cells in surface and food samples from collective kitchens [Poster presentation]. mBIO2018 - Les microbiotes et la santé humaine, animale et environnementale: Préventions et traitements du futur, Paris, France.

HUART, J., Leenders, J., Taminiau, B., DESCY, J., SAINT-REMY, A., Daube, G., KRZESINSKI, J.-M., MELIN, P., De Tullio, P., & JOURET, F. (18 May 2018). GUT MICROBIOTA AND FAECAL LEVELS OF SHORT CHAIN FATTY ACIDS DIFFER UPON BLOOD PRESSURE LEVELS IN MAN. Nephrology Dialysis Transplantation, 33 (Issue suppl_1), 368–i369. doi:10.1093/ndt/gfy104.SP069
Peer Reviewed verified by ORBi

Moula, N., Hornick, J.-L., Cabaraux, J.-F., Korsak Koulagenko, N., Daube, G., Dawans, E., Antoine, N., Taminiau, B., & Detilleux, J. (2018). Effects of dietary black soldier fly larvae on performance of broilers mediated or not through changes in microbiota. Journal of Insects as Food and Feed, 4 (1), 31-42. doi:10.3920/JIFF2017.0011
Peer Reviewed verified by ORBi

Moula, N., Cabaraux, J.-F., Dawans, E., Taminiau, B., & Detilleux, J. (2018). Feeding on larveae of black soldier flies doesn't substantially modify chicken caecal microbiota. In Proccedings of the 5th FARAH Day (pp. 59).
Peer reviewed

Li, B., Leblois, J., Taminiau, B., Schroyen, M., Beckers, Y., Bindelle, J., & Everaert, N. (2018). The effect of inulin and wheat bran on intestinal health and microbiota in the early life of broiler chickens. Poultry Science. doi:10.3382/ps/pey195
Peer Reviewed verified by ORBi

Foure, M., Dugardin, C., Foligne, B., Hance, P., Cadalen, T., Delcourt, A., Taminiau, B., Daube, G., Ravallec, R., Cudennec, B., Hilbert, J.-L., & Lucau-Danila, A. (2018). Chicory Roots for Prebiotics and Appetite Regulation: A Pilot Study in Mice. Journal of Agricultural and Food Chemistry, 66 (25), 6439-6449. doi:10.1021/acs.jafc.8b01055
Peer Reviewed verified by ORBi

Hache-Carré de Lusancay, A., Taminiau, B., Lecoq, L., Daube, G., Amory, H., & Cesarini Latorre, C. (2018). Effects of oral administration of omeprazole on equine faecal microbiota. In Proceedings du FARAH Day.
Peer reviewed

Cauchie, E., Korsak Koulagenko, N., Ellouze, M., Delhalle, L., Taminiau, B., Papa Abdoulaye, F., & Daube, G. (2018). The use of predictive models in the context of food spoilage: the case of white pudding. In Proceedings of the First international Conference on "Innovative Food Ingredients and Food safety". Bangkok, Thailand: Asian Institute of Technology.
Peer reviewed

Le Bourgot, C., Ferret-Bernard, S., Apper, E., Taminiau, B., Cahu, A., Le Normand, L., Respondek, F., Le Huerou-Luron, I., & Blat, S. (2018). Perinatal short-chain fructooligosaccharides program intestinal microbiota and improve enteroinsular axis function and inflammatory status in high-fat diet-fed adult pigs. FASEB Journal, 201800108. doi:10.1096/fj.201800108R
Peer Reviewed verified by ORBi

De Witte, C., Taminiau, B., Flahou, B., Hautekiet, V., Daube, G., Ducatelle, R., & Haesebrouck, F. (2018). In-feed bambermycin medication induces anti-inflammatory effects and prevents parietal cell loss without influencing Helicobacter suis colonization in the stomach of mice. Veterinary Research, 49 (1), 35. doi:10.1186/s13567-018-0530-1
Peer Reviewed verified by ORBi

Ly, S., Mith, H., Tarayre, C., Taminiau, B., Daube, G., Fauconnier, M.-L., & Delvigne, F. (2018). Impact of microbial composition of Cambodian traditional dried starters (Dombea) on flavor compounds of rice wine: combining amplicon sequencing with HP-SPME-GCMS. Frontiers in Microbiology. doi:10.3389/fmicb.2018.00894
Peer Reviewed verified by ORBi

Poelaert, C., Nollevaux, G., Boudry, C., Taminiau, B., Nezer, C., Daube, G., Schneider, Y.-J., Portetelle, D., Thewis, A., & Bindelle, J. (2018). Reducing agent can be omitted in the incubation medium of the batch in vitro fermentation model of the pig intestines. Animal, 12, 1154-1164. doi:10.1017/S1751731117002749
Peer Reviewed verified by ORBi

Cerri, S., Taminiau, B., Votion, D., Amory, H., Daube, G., & Cesarini Latorre, C. (02 November 2017). Comparison of faecal microbiota of horses suffering from atypical myopathy and healthy co-grazers [Poster presentation]. 10th annual congress of the European College of Equine Internal Medicine (ECEIM), Budapest, Hungary.

Cerri, S., Taminiau, B., Votion, D., Amory, H., Daube, G., & Cesarini Latorre, C. (13 October 2017). Comparison of faecal microbiota of horses suffering from atypical myopathy and healthy co-grazers [Paper presentation]. 4th FARAH-Day.

Krings, S., Crevecoeur, S., Rodriguez Diaz, C., Fall, P. A., Taminiau, B., & Daube, G. (13 October 2017). Comparison between swabbing devices in order to analyse the microbial flora found on surfaces by classical microbiology and 16S rDNA amplicon sequencing [Paper presentation]. 4th FARAH-Day, Liège, Belgium.

Fastrès, A., Roels, E., Taminiau, B., Rajamäki, M. M., Daube, G., & Clercx, C. (2017). Possible effect of environment on lung microbiota in the healthy West Highland white terrier.

Krings, S., Crevecoeur, S., Rodriguez Diaz, C., Fall, P. A., Taminiau, B., & Daube, G. (22 September 2017). Comparison between swabbing devices in order to analyse the microbial flora found on surfaces of community kitchens by classical microbiology and amplicon sequencing [Poster presentation]. BSFM (Belgian Society for Food Microbiologists) - 22nd Conference on Food Microbiology, Brussels, Belgium.

Rodriguez Diaz, C., Hakimi, D.-E., Vanleyssem, R., Taminiau, B., Van Broeck, J., Delmee, M., Korsak Koulagenko, N., & Daube, G. (18 September 2017). Clostridium difficile in beef cattle farms, farmers and their environment: assessing the spread of the bacterium. Veterinary Microbiology, 2010, 183-187. doi:10.1016/j.vetmic.2017.09.010
Peer Reviewed verified by ORBi

Krings, S., Crevecoeur, S., Rodriguez Diaz, C., Fall, P. A., Taminiau, B., & Daube, G. (11 July 2017). Comparison between swabbing devices in order to analyze the microbial flora found on surfaces of community kitchens by classical microbiology and 16S rRNA amplicon sequencing [Poster presentation]. FEMS2017 - 7th Congress of European Microbiologists, Valencia, Spain.

Bondue, P., Lebrun, S., Crevecoeur, S., Taminiau, B., Everaert, N., Daube, G., & Delcenserie, V. (June 2017). Impact of 3’-­‐sialyllactose and Bifidobacterium crudilactis on infant feces microbial composition and virulence modulation of Escherichia coli O157:H7, using the SHIME® gastrointes6nal model [Poster presentation]. 21ème colloque du Club des Bactéries Lactiques, Lille, France.

Li, B., Leblois, J., Taminiau, B., Willems, L., Beckers, Y., Bindelle, J., & Everaert, N. (08 May 2017). The effect of inulin and/or wheat bran in the diet during early life on intestinal health of broiler chicks [Paper presentation]. 21st European Symposium on Poultry Nutrition (ESPN 2017).

Ceugniez, A., Taminiau, B., Coucheney, F., Philippe, J., Delcenserie, V., Daube, G., & Drider, D. (17 April 2017). Use of a metagenetic approach to monitor the bacterial microbiota of “Tomme d’Orchies” cheese during the ripening process. International Journal of Food Microbiology, 247, 65-69. doi:10.1016/j.ijfoodmicro.2016.10.034
Peer Reviewed verified by ORBi

Korsak Koulagenko, N., Taminiau, B., Hupperts, C., Delhalle, L., Nezer, C., Delcenserie, V., & Daube, G. (17 April 2017). Assessment of bacterial superficial contamination in classical or ritually slaughtered cattle using metagenetics and microbiological analysis. International Journal of Food Microbiology, 247, 79-86. doi:10.1016/j.ijfoodmicro.2016.10.013
Peer Reviewed verified by ORBi

Fakih, I.* , Thiry, D.* , Duprez, J.-N., Saulmont, M., Iguchi, A., Piérard, D., Jouant, L., Daube, G., Ogura, Y., Hayashi, T., Taminiau, B., & Mainil, J. (April 2017). Identification of Shiga toxin-producing (STEC) and enteropathogenic (EPEC) Escherichia coli in diarrhoeic calves and comparative genomics of O5 bovine and human STEC. Veterinary Microbiology, 202, 16-22. doi:10.1016/j.vetmic.2016.02.017
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Dufourny, S., Lallemand, F., Taminiau, B., Baerts, M., Guimaraes, B., Everaert, N., Romnee, J.-M., Froidmont, E., Rondia, P., & Delcenserie, V. (2017). Développement d’un modèle in vitro dynamique et continu de digestion chez le porcelet – le baby-SPIME – simulant le processus de sevrage en réacteurs. In J. Mainil, Compte-rendu du 7è Colloque International francophone de Microbiologie Animale (pp. 41).

Cauchie, E., Baré, G., Delhalle, L., Taminiau, B., Tahiri, A., Korsak Koulagenko, N., & Daube, G. (March 2017). Métagénétique et microbiologie classique pour le suivi des écosystèmes microbiens : l’exemple de la viande hachée de porc [Poster presentation]. CIFMA : 7ème Colloque International Francophone de Microbiologie animale, Liège, Belgium.

Abekhti, A., Dgeghati, S., Taminiau, B., Kihal, M., & Daube, G. (March 2017). Optimization of DNA extraction from the Algerian traditional date’s product “Btana”. Applied Biology in Saharan Areas, 1 (1), 23-32.
Peer reviewed

Coton, M., Pawtowski, A., Taminiau, B., Burgaud, G., Deniel, F., Coulloumme-Labarthe, L., Fall, A., Daube, G., & Coton, E. (2017). Unraveling microbial ecology of industrial-scale Kombucha fermentations by metabarcoding and culture-based methods. FEMS Microbiology Ecology, 93 (5). doi:10.1093/femsec/fix048
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Neyrinck, A. M., Etxeberria, U., Taminiau, B., Daube, G., Van Hul, M., Everard, A., Cani, P. D., Bindels, L. B., & Delzenne, N. M. (2017). Rhubarb extract prevents hepatic inflammation induced by acute alcohol intake, an effect related to the modulation of the gut microbiota. Molecular Nutrition and Food Research, 61 (1), 1500899. doi:10.1002/mnfr.201500899
Peer Reviewed verified by ORBi

Tarayre, C., Charlier, R., Delepierre, A., Brognaux, A., Bauwens, J., Francis, F., DERMIENCE, M., Lognay, G., Taminiau, B., Daube, G., Compère, P., Meers, E., Michels, E., & Delvigne, F. (2017). Looking for phosphate-accumulating bacteria in activated sludge processes : a multidisciplinary approach. Environmental Science and Pollution Research. doi:10.1007/s11356-017-8490-y
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Garigliany, M.-M., Taminiau, B., El Agrebi, N., Cadar, D., Gilliaux, G., Hue, M., Desmecht, D., Daube, G., Linden, A., Farnir, F., De Proft, M., & Saegerman, C. (2017). Moku Virus in Invasive Asian Hornets, Belgium, 2016. Emerging Infectious Diseases, 23 (12), 2109-2112. doi:10.3201/eid2312.171080
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Neyrinck, A. M., Taminiau, B., Walgrave, H., Daube, G., Cani, P. D., Bindels, L. B., & Delzenne, N. M. (2017). Spirulina Protects against Hepatic Inflammation in Aging: An Effect Related to the Modulation of the Gut Microbiota? Nutrients, 9 (6). doi:10.3390/nu9060633
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Ceugniez, A., Taminiau, B., Coucheney, F., Jacques, P., Delcenserie, V., Daube, G., & Drider, D. (2017). Fungal diversity of “Tomme d'Orchies” cheese during the ripening process as revealed by a metagenomic study. International Journal of Food Microbiology, 258, 89-93. doi:10.1016/j.ijfoodmicro.2017.07.015
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Saint-Cyr, M. J., Haddad, N., Taminiau, B., Poezevara, T., Quesne, S., Amelot, M., Daube, G., Chemaly, M., Dousset, X., & Guyard-Nicodeme, M. (2017). Use of the potential probiotic strain Lactobacillus salivarius SMXD51 to control Campylobacter jejuni in broilers. International Journal of Food Microbiology. doi:10.1016/j.ijfoodmicro.2016.07.003
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Iskandar, C. F., Borges, F., Taminiau, B., Daube, G., Zagorec, M., Remenant, B., Leisner, J. J., Hansen, M. A., Sorensen, S. J., Mangavel, C., Cailliez-Grimal, C., & Revol-Junelles, A.-M. (2017). Comparative Genomic Analysis Reveals Ecological Differentiation in the Genus Carnobacterium. Frontiers in Microbiology, 8, 357. doi:10.3389/fmicb.2017.00357
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Degrune, F., Theodorakopoulos, N., Colinet, G., Hiel, M.-P., Bodson, B., Taminiau, B., Daube, G., Vandenbol, M., & Hartmann, M. (2017). Temporal dynamics of soil microbial communities below the seedbed under two contrasting tillage regimes. Frontiers in Microbiology. doi:10.3389/fmicb.2017.01127
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De Witte, C., Flahou, B., Ducatelle, R., Smet, A., De Bruyne, E., Cnockaert, M., Taminiau, B., Daube, G., Vandamme, P., & Haesbrouck, F. (January 2017). Detection, isolation and characterization of Fusobacterium gastrosuis sp. nov. colonizing the stomach of pigs. Systematic and Applied Microbiology, 40 (1), 42-50. doi:10.1016/j.syapm.2016.10.001
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Mauroy, A., Taminiau, B., Nezer, C., Ghurburrun, E., Baurain, D., Daube, G., & Thiry, E. (2017). High-throughput sequencing analysis reveals the genetic diversity of different regions of the murine norovirus genome during in vitro replication. Archives of Virology, 16 (4), 1019-1023. doi:10.1007/s00705-016-3179-y
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Roels, E., Taminiau, B., Darnis, E., Neveu, F., Daube, G., & Clercx, C. (21 October 2016). Comparative analysis of the respiratory microbiota of healthy dogs and dogs with canine idiopathic pulmonary fibrosis [Poster presentation]. 3rd FARAH Day, Liège, Belgium.

Kergourlay, G., de Barsy, J., Vassen, M., Douny, C., Taminiau, B., & Daube, G. (21 October 2016). FloPro project: Biopreservation of chilled food products using their own beneficial microbiota: the Belgian white pudding case [Poster presentation]. 3rd FARAH Day, Liège, Belgium.

Roels, E., Taminiau, B., Darnis, E., Neveu, F., Daube, G., & Clercx, C. (2016). Comparative analysis of the respiratory microbiota of healthy dogs and dogs with canine idiopathic pulmonary fibrosis. Journal of Veterinary Internal Medicine.
Peer Reviewed verified by ORBi

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., Korsak Koulagenko, N., & Daube, G. (September 2016). Metagenetics and predictive microbiology: a new tool to follow the evolution of microbial subpopulation in food [Paper presentation]. 21th Conference on Food Microbiology, BSFM, Brussels, Belgium.

Fall, P. A., Burteau, S., Detry, E., Nezer, C., Taminiau, B., & Daube, G. (19 July 2016). Study of the microbial diversity of microbial ring trials by metagenomic analysis : Quantification of alive bacteria by exclusion of dead bacteria [Poster presentation]. FoodMicro 2016, Dublin, Ireland.

Cauchie, E., Delhalle, L., Taminiau, B., Korsak Koulagenko, N., & Daube, G. (18 July 2016). Monitoring and modelling of microbial ecosystem in Belgian white pudding: a new example for combining metagenetics and predictive microbiology [Poster presentation]. FoodMicro2016, Dublin, Ireland.

Cauchie, E., Delhalle, L., Taminiau, B., Korsak Koulagenko, N., & Daube, G. (18 July 2016). Metagenetics and predictive microbiology: a new tool to understand the kinetics of microbial subpopulation in minced pork meat [Poster presentation]. FoodMicro2016, Dublin, Ireland.

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., Korsak Koulagenko, N., & Daube, G. (18 July 2016). Metagenetics and predictive microbiology: a new tool to understand the kinetics of microbial subpopulations in Belgian white pudding [Poster presentation]. FoodMicro2016, Dublin, Ireland.

Mace, S., Kergourlay, G., Taminiau, B., & Daube, G. (July 2016). Metagenomic and metatranscriptomic analysis of naturally contaminated beef meat products under modified atmosphere packaging during storage [Poster presentation]. 25th International ICFMH Conference, Dublin, Ireland.

Kergourlay, G., Labrozzo, S., de Barsy, J., Vassen, M., Taminiau, B., & Daube, G. (July 2016). FLORPRO project: Selection of beneficial bacteria from chilled food products to protect them from bacterial spoilage and increase their shelf life [Poster presentation]. 25th International ICFMH Conference, Dublin, Ireland.

Saint-Cyr, M. J., Haddad, N., Taminiau, B., Poezevera, T., Quesne, S., Amelot, M., Daube, G., Chemaly, M., Guyard-Nicodème, M., & Dousset, X. (20 June 2016). Modulation of the chicken cecal microbiota in response to Campylobacter jejuni challenge and Lactobacillus salivarius SMXD51 treatment [Poster presentation]. Gut Microbiology - INRA Rowett 2016, Clermont-Ferrand, France.

Rodriguez Diaz, C., Warszawski, N., Korsak Koulagenko, N., Taminiau, B., Van Broeck, J., Delmée, M., & Daube, G. (2016). Laboratory identification of anaerobic bacteria isolated on Clostridium difficile selective medium. Acta Microbiologica et Immunologica Hungarica. doi:10.1556/030.63.2016.2.3
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POELAERT, C., Despret, X., Portetelle, D., Sindic, M., Eppe, G., Taminiau, B., Daube, G., Nezer, C., Beckers, Y., Thewis, A., & Bindelle, J. (June 2016). Effects of protein source and cooking procedure on intestinal microbiota and on fermentation end-products in rats [Poster presentation]. 10th INRA-Rowett Symposium Gut Microbiology, Clermont-Ferrand, France.

Rodriguez Diaz, C., Oukbir, M., Taminiau, B., & Daube, G. (11 May 2016). Association of Targeted metagenomic analysis and classical microbiology for Clostridium difficile detection and microbial ecosystem mapping of surfaces hands and foodstuffs in a meat processing plant [Poster presentation]. IAFP's 12th European Symposium of Food Safety, Athens, Greece.

Neyrinck, A., Taminiau, B., Daube, G., Bindels, L. B., & Delzenne, N. M. (March 2016). Oral administration of a Spirulina extract protects old mice against hepatic “ammaging”. Nutrition Clinique et Metabolisme, 30 (1), 64. doi:10.1016/j.nupar.2016.01.077
Peer Reviewed verified by ORBi

Neyrinck, A., Taminiau, B., Daube, G., Bindels, L. B., & Delzenne, N. M. (18 February 2016). Oral administration of a spirulina extract protects old mice against hepatic "inflammaging" [Poster presentation]. Belgian Week of Gastroenterology, Bruxelles, Belgium.

Degrune, F., Theodorakopoulos, N., Dufrêne, M., Colinet, G., Bodson, B., Hiel, M.-P., Taminiau, B., Daube, G., Vandenbol, M., & Nezer, C. (Other coll.). (February 2016). No favorable effect of reduced tillage on microbial community diversity in a silty loam soil (Belgium). Agriculture, Ecosystems and Environment, 224, 12-21. doi:10.1016/j.agee.2016.03.017
Peer Reviewed verified by ORBi

Kinet, R., Dzaomuho, P., Baert, J., Taminiau, B., Daube, G., Nezer, C., Brostaux, Y., Nguyen, F., Dumont, G., Thonart, P., & Delvigne, F. (2016). Flow cytometry community fingerprinting and amplicon sequencing for the assessment of landfill leachate cellulolytic bioaugmentation. Bioresource Technology. doi:10.1016/j.biortech.2016.04.131
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Fernadez, J., Van Broeck, J., Taminiau, B., Avesani, V., Boga, J. A., Vazquez, F., Delmée, M., & Daube, G. (2016). Clostridium difficile presence in Spanish and Belgian hospitals. Microbial Pathogenesis, 100, 141-148. doi:10.1016/j.micpath.2016.09.006
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Brach, P., Delmée, M., & Daube, G. (2016). Longitudinal survey of Clostridium difficile presence and gut microbiota composition in a Belgian nursing home. BMC Microbiology, 16 (229). doi:10.1186/s12866-016-0848-7
Peer Reviewed verified by ORBi

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Burteau, S., Delcenserie, V., Poullet, J. B., & Daube, G. (2016). Exploring the bacterial diversity of Belgian steak tartare using metagenetics and qPCR analysis. Journal of Food Protection, 79 (2), 220-229. doi:10.4315/0362-028X.JFP-15-185
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Van Broeck, J., Taminiau, B., Demee, M., & Daube, G. (2016). Clostridium difficile infection: Early history, diagnosis and molecular strain typing methods. Microbial Pathogenesis, 97, 59-78. doi:10.1016/j.micpath.2016.05.018
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Delmée, M., & Daube, G. (2016). Clostridium difficile in Food and Animals: A Comprehensive Review. Advances in Experimental Medicine and Biology, 27. doi:10.1007/5584_2016_27
Peer Reviewed verified by ORBi

Tanimomo, J., Delcenserie, V., Taminiau, B., Daube, G., Saint-Hubert, C., & Durieux, A. (2016). Growth and Freeze-Drying Optimization of Bifidobacterium crudilactis. Food and Nutrition Sciences, 7, 616-626.
Peer reviewed

Tran, T. H. T.* , Boudry, C.* , Everaert, N., Thewis, A., Portetelle, D., Daube, G., Nezer, C., Taminiau, B., & Bindelle, J. (2016). Adding mucins to an in vitro batch fermentation model of the large intestine induces changes in microbial population isolated from porcine feces depending on the substrate. FEMS Microbiology Ecology, 92 (2), 13. doi:10.1093/femsec/fiv165
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., Korsak Koulagenko, N., & Daube, G. (2016). The use of 16S rRNA gene metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding. International Journal of Food Microbiology. doi:10.1016/j.ijfoodmicro.2016.10.012
Peer Reviewed verified by ORBi

Neyrinck, A. M., Pachikian, B., Taminiau, B., Daube, G., Frederick, R., Cani, P. D., Bindels, L. B., & Delzenne, N. M. (2016). Intestinal Sucrase as a Novel Target Contributing to the Regulation of Glycemia by Prebiotics. PLoS ONE, 11 (8). doi:10.1371/journal.pone.0160488
Peer Reviewed verified by ORBi

Bardiau, M., Caplin, J., Detilleux, J., Graber, H., Moroni, P., Taminiau, B., & Mainil, J. (2016). Existence of two groups of Staphylococcus aureus strains isolated from bovine mastitis based on biofilm formation, intracellular survival, capsular profile and agr-typing. Veterinary Microbiology, 185, 1-6. doi:10.1016/j.vetmic.2016.01.003
Peer Reviewed verified by ORBi

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., & Daube, G. (02 December 2015). The 16S rDNA metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding [Poster presentation]. BAMST Symposium : Meet the Belgiam Meet Researchers, Gent, Belgium.

Degrune, F., Theodorakopoulos, N., Dufrêne, M., Taminiau, B., Colinet, G., Bodson, B., Hiel, M.-P., Daube, G., & Vandenbol, M. (01 December 2015). No favorable effect of reduced tillage on microbial communities in a silty loam soil (Belgium) [Poster presentation]. Ecology of soil microorganisms, Prague, Czechia.

Kergourlay, G., Taminiau, B., Daube, G., & Champomier Vergès, M.-C. (20 November 2015). Metagenomic insights into the dynamics of microbial communities in food. International Journal of Food Microbiology, 213, 31-39. doi:10.1016/j.ijfoodmicro.2015.09.010
Peer Reviewed verified by ORBi

Neyrinck, A., Etxeberria, U., Taminiau, B., Daube, G., Cani, P. D., Bindels, L., & Delzenne, N. M. (08 November 2015). A crude rhubarb extract protects from acute ethanol-induced liver damage in association with increased Akkermansia spp. Population in the gut microbiota of mice [Poster presentation]. ESPEN Workshop on "Carbohydrates and Insulin Resistance - from Basic to Clinical Nutrition", Venise, Italy.

Neyrinck, A., Taminiau, B., Daube, G., Bindels, L. B., & Delzenne, N. M. (20 October 2015). Oral administration of a spirulina extract protects old mice against hepatic "inflammaging" [Poster presentation]. 12th European Nutrition Conference FENS 2015, Berlin, Germany.

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., & Daube, G. (16 October 2015). The 16S rDNA metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding [Poster presentation]. FARAH Day 2015, Liege, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Delmée, M., & Daube, G. (16 October 2015). Characterization and relatedness of C. difficile strains isolated from animals, food and humans in Belgium [Poster presentation]. 5th Edition Farah Day, Liège, Belgium.

Taminiau, B., Hanon, M., Nezer, C., Tricot, B., & Daube, G. (16 October 2015). Identification and traceability of animal and human faecal contamination in bathing sites in Wallonia [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Korsak Koulagenko, N., Taminiau, B., Hupperts, C., Delhalle, L., Nezer, C., Burteau, S., Delcenserie, V., Ferauche, C., & Daube, G. (16 October 2015). Use of 16S rDNA metagenetics and classical microbiology to assess the bacterial superficial contamination patterns in bovines classically slaughtered or following the halal ritual [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Fakih, I., Thiry, D., Ogura, Y., Pierard, D., Saulmont, M., Daube, G., Hayashi, T., Mainil, J., & Taminiau, B. (16 October 2015). Phylogenomic comparison of 16 O5 Shigatoxigenic Escherichia coli (STEC) isolated from young calves and humans with diarrhoea [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Delooz, L., Evrard, J., Grégoire, F., Taminiau, B., & Daube, G. (16 October 2015). Progress in the etiological diagnosis of bovine abortions: the contribution of 16S rRNA metagenetic analysis [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeack, J., Avesani, V., Delmée, M., & Daube, G. (16 October 2015). Carriage of clostridium difficile in hospital patients in spain, including molecular characterization and antimicrobial susceptibility of the isolates [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Fall, P. A., Burteau, S., Detry, É., Nezer, C., Delhalle, L., Taminiau, B., & Daube, G. (16 October 2015). Study of the microbial diversity of microbial ring trials by metagenomic analysis : Quantification of alive bacteria by exclusion of dead bacteria [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Delooz, L., Houtain, J.-Y., Grégoire, F., Evrard, J., Daube, G., Czapicki, G., & Taminiau, B. (14 October 2015). New horizons in the etiological diagnosis of bovine abortions, the contribution of 16S rDNA sequencing [Poster presentation]. EBF 2015, Rome, Italy.

Rodriguez Diaz, C., Taminiau, B., Brévers, B., Avesani, V., Van Broeck, J., Leroux, A., Gallot, M., Bruwier, A., Amory, H., Delmée, M., & Daube, G. (16 September 2015). Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission. BMC Microbiology, 15, 181. doi:10.1186/s12866-015-0514-5
Peer Reviewed verified by ORBi

Daube, G., Taminiau, B., Nezer, C., & Delhalle, L. (02 July 2015). Metagenomic analysis of samples.

Fakih, I., Thiry, D., Ogura, Y., Pierard, D., Saulmont, M., Daube, G., Hayashi, T., Mainil, J., & Taminiau, B. (July 2015). Phylogenomic comparison of 16 O5 Shigatoxigenic Escherichia coli (STEC) isolated from <1 month-old calves and humans with diarrhea [Poster presentation]. Second International ECMIS Symposium, Gand, Belgium.

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., Korsak Koulagenko, N., & Daube, G. (17 June 2015). The 16S rDNA metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding [Poster presentation]. CBL 20th edition (Conférence sur les bactéries lactiques), Lille, France.

Fall, P. A., Burteau, S., Detry, É., Nezer, C., Delhalle, L., Taminiau, B., & Daube, G. (17 June 2015). Étude de la diversité microbienne de poudre de lait dopée par analyse métagénomique: Quantification des bactéries vivantes par exclusion de bactéries mortes [Poster presentation]. Vingtième colloque du Club des bactéries lactiques, Lille, France.

Korsak Koulagenko, N., Taminiau, B., Hupperts, C., Delhalle, L., Nezer, C., Burteau, S., Delcenserie, V., Ferauche, C., & Daube, G. (17 June 2015). Use of 16S rDNA Metagenetics and classical Microbiology to Assess the bacterial superficial Contamination Patterns in Bovines Classically Slaughtered or following the Halal Ritual [Poster presentation]. colloque du Club des bactéries lactiques 2015 (CBL2015), Lille, France.

Fakih, I., Ogura, Y., Thiry, D., Pierard, D., Saulmont, M., Daube, G., Hayashi, T., Mainil, J., & Taminiau, B. (June 2015). Phylogenomic comparison of 16 O5 Shigatoxigenic Escherichia coli (STEC) isolated from <1 month-old calves and humans with diarrhoea [Poster presentation]. 6th Congress of European Microbiologists, Maastricht, Netherlands.

Taminiau, B., Delhalle, L., & Daube, G. (June 2015). Les écosystèmes microbiens redécouverts [Paper presentation]. Vingtième colloque du Club des bactéries lactiques, Lille, France.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Fernandez, J., Boga, J. A., Vazquez, F., Delmée, M., & Daube, G. (21 May 2015). CARRIAGE OF CLOSTRIDIUM DIFFICILE IN HOSPITAL PATIENTS IN SPAIN, INCLUDING MOLECULAR CHARACTERIZATION AND ANTIMICROBIAL SUSCEPTIBILITY OF THE ISOLATES [Poster presentation]. ICDS 5th International Clostridium difficile Symposium, Bled, Slovenia.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (21 April 2015). Heat survival of Clostridium difficile spores in ground meat during cooking process [Poster presentation]. IAFP’s 11th European Symposium on Food Safety, Cardiff, Wales, United Kingdom.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (01 April 2015). Association of classical microbiology and 16S rDNA metagenetic analysis to evaluate the presence of Clostridium difficile ina a belgian nursing home [Poster presentation]. 5th International Human Microbiome Congres, Luxembourg, Luxembourg.

Degrune, F., Dufrêne, M., Taminiau, B., Barbieux, S., Hiel, M.-P., Daube, G., Vandenbol, M., & Nezer, C. (Other coll.). (April 2015). Soil microbial community composition changes according to the tillage practice and plant development stage [Poster presentation]. European Geosciences Union General Assembly 2015.

Degrune, F., Dufrêne, M., Colinet, G., Massart, S., Taminiau, B., Bodson, B., Hiel, M.-P., Daube, G., Vandenbol, M., & Nezer, C. (Other coll.). (2015). A novel sub-phylum method discriminates better the impact of crop management on soil microbial community. Agronomy for Sustainable Development. doi:10.1007/s13593-015-0291-4
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Korsak Koulagenko, N., Taminiau, B., Avesani, V., van Broeck, J., Brach, P., Delmée, M., & Daube, G. (05 January 2015). Clostridium difficile from food and surface samples in a Belgian nursing home: An unlikely source of contamination. Anaerobe, 32, 87-89. doi:10.1016/j.anaerobe.2015.01.001
Peer Reviewed verified by ORBi

Abekhti, A., Taminiau, B., Kihal, M., & Daube, G. (2015). Metagenomic analysis of the bacterial microbiota linked to the traditional Algerian date product "Btana". Annals of Microbiology. doi:10.1007/s13213-015-1084-3
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Michel, D., & Daube, G. (2015). Clostridium difficile infection and intestinal microbiota interactions. Microbial Pathogenesis, 89, 201-209. doi:10.1016/j.micpath.2015.10.018
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Avesani, V., Taminiau, B., Van Broeck, J., Brévers, B., Delmée, M., & Daube, G. (2015). Investigation of clostridium difficile interspecies relatedness using multilocus sequence typing, multilocus variable-number tandem-repeat analysis and antimicrobial susceptibility testing. Veterinary Journal, 206, 349-355. doi:10.1016/j.tvjl.2015.09.001
Peer Reviewed verified by ORBi

Pauwels, J., Taminiau, B., Janssens, G., De Beenhouwer, M., Delhalle, L., Daube, G., & Coopman, F. (2015). Cecal drop reflects the chickens' cecal microbiome, fecal drop does not. Journal of Microbiological Methods, 117, 164-70. doi:10.1016/j.mimet.2015.08.006
Peer Reviewed verified by ORBi

Bindels, L. B., Neyrinck, A. M., Salazar, N., Taminiau, B., Druart, C., Muccioli, G. G., Francois, E., Blecker, C., Richel, A., Daube, G., Mahillon, J., de Los Reyes-Gavilan, C. G., Cani, P. D., & Delzenne, N. M. (2015). Non Digestible Oligosaccharides Modulate the Gut Microbiota to Control the Development of Leukemia and Associated Cachexia in Mice. PLoS ONE, 10 (6), 0131009. doi:10.1371/journal.pone.0131009
Peer Reviewed verified by ORBi

Taminiau, B., Rodriguez Diaz, C., Delhalle, L., Delcenserie, V., & Daube, G. (2015). L’exploration du microbiote intestinal par les outils de la métagénomique au service de la santé animale et humaine. Food Science and Law, (4), 165-169.
Peer reviewed

De Maesschalck, C., Eeckhaut, V., Maertens, L., De Lange, L., Marchal, L., Nezer, C., De Baere, S., Croubels, S., Daube, G., Dewulf, J., Haesebrouck, F., Ducatelle, R., Taminiau, B., & Van Immerseel, F. (2015). The effects of xylo-oligosaccharides on performance and microbiota in broiler chickens. Applied and Environmental Microbiology. doi:10.1128/AEM.01616-15
Peer Reviewed verified by ORBi

Kinet, R., Destain, J., Hiligsmann, S., Thonart, P., Delhalle, L., Taminiau, B., Daube, G., & Delvigne, F. (2015). Thermophilic and cellulolytic consortium isolated from composting plants improves anaerobic digestion of cellulosic biomass: toward a microbial resource management approach. Bioresource Technology, 189, 138-44. doi:10.1016/j.biortech.2015.04.010
Peer Reviewed verified by ORBi

Kinet, R., Dzaomuho-Lenieregue, P., Hiligsmann, S., Taminiau, B., Tarayre, C., Daube, G., & Delvigne, F. (2015). Flow cytometry fingerprinting for the design of a cellulolytic synthetic microbial community [Poster presentation]. 3rd European Congress of Applied Biotechnology (ECAB 2015).

Korsak Koulagenko, N., Taminiau, B., Leclercq, M., Nezer, C., Crevecoeur, S., Ferauche, C., Detry, E., Delcenserie, V., & Daube, G. (2015). Short communication: Evaluation of the microbiota of kefir samples using metagenetic analysis targeting the 16S and 26S ribosomal DNA fragments. Journal of Dairy Science, 98, 3684-3689. doi:10.3168/jds.2014-9065
Peer Reviewed verified by ORBi

Neyrinck, A., Theulier, P., Jouret, A., Taminiau, B., Daube, G., Frédérick, R., Cani, P. D., & Delzenne, N. M. (10 December 2014). Impact de nutriments prébiotiques de type inuline sur la glycémie : mise en évidence de nouvelles cibles thérapeutiques [Poster presentation]. Journées francophones de Nutrition, Bruxelles, Belgium.

Degrune, F., Dufrêne, M., Taminiau, B., Massart, S., Barbieux, S., Bodson, B., Hiel, M.-P., Daube, G., Vandenbol, M., & Nezer, C. (Other coll.). (02 December 2014). Detecting microbial patterns in relation to soil agricultural practices and the plant development stage [Poster presentation]. The Fisrt Global Soil Biodiversity Conference, Dijon, France.

Neyrinck, A. M., Theulier, P., Jouret, A., Taminiau, B., Daube, G., Frédérick, R., Cani, P. D., & Delzenne, N. M. (December 2014). Impact de l’inuline sur l’activité des disaccharidases intestinales : une nouvelle cible contribuant à l’effet hypoglycémiant des prébiotiques [Paper presentation]. Journées francophones de Nutrition, Bruxelles, Belgium.

Bindels, L. B., Neyrinck, A. M., Salazar, N., Taminiau, B., Druart, C., Muccioli, G. G., François, E., Blecker, C., Richel, A., Daube, G., Mahillon, J., de los Reyes-Gavilan, C., Cani, P. D., & Delzenne, N. M. (December 2014). P180: Intérêt de la modulation du microbiote intestinal par les oligosaccharides non digestibles dans le contrôle de la leucémie et de la cachexie cancéreuse. Nutrition Clinique et Metabolisme, 28 (S1), 162. doi:10.1016/S0985-0562(14)70822-2
Peer Reviewed verified by ORBi

Taminiau, B., Neyrinck, A. M., Nezer, C., Etxeberria, U., Burteau, S., Delzenne, N., & Daube, G. (17 October 2014). Hepatoprotective effects of crude rhubarbe extract extend to the modulation of gut microbiota in a murine acute alcohol-induced steato-hepatitis model [Paper presentation]. FARAH Day, Liège, Belgium.

Gand, M., Cauchie, E., Kergourlay, G., Nezer, C., Taminiau, B., & Daube, G. (17 October 2014). Growth of microorganisms on white pudding in different conditions of temperature followed by classical microbiology and metagenomic analysis [Poster presentation]. FARAH Day 2014, Liège, Belgium.

Gand, M., Cargnel, M., Kergourlay, G., Nezer, C., Taminiau, B., & Daube, G. (17 October 2014). Growth of microorganisms on precooked pasta in different conditions of temperature followed by classical microbiology and metagenomic analysis [Poster presentation]. FARAH Day 2014, Liège, Belgium.

Delcenserie, V., Taminiau, B., Delhalle, L., Nezer, C., Crevecoeur, S., & Daube, G. (17 October 2014). Protected Designation of Origin Belgian cheese microbiota characterized using metagenomic analysis [Poster presentation]. FARAH Day 2014, Liège, Belgium.

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Delcenserie, V., Ferauche, C., Picolo, D., Poullet, J. B., & Daube, G. (17 October 2014). Evaluation of the microbiota of “steak tartare” with metagenomic analysis targeting 16S ribosomal DNA [Poster presentation]. FARAH Day 2014, Liège, Belgium.

Taminiau, B., Neyrinck, A., Delhalle, L., Burteau, S., Delzenne, N., & Daube, G. (17 October 2014). Comparison of gut microbiota highfat induced modifications in young and old mice models [Poster presentation]. FARAH Day 2014, Liège, Belgium.

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (17 October 2014). Diversity of Clostridium difficile isolates from humans and animals [Paper presentation]. Farah Day, Liège, Belgium.

Taminiau, B., Ogura, Y., Hayashi, T., Daube, G., & Mainil, J. (October 2014). Phylogenomic comparison of 18 clinical Escherichia coli strains belonging to serogroups O5 and O118 isolated from bovine and human [Paper presentation]. FARAH Day, Liège, Belgium.

Bindels, L. B., Neyrinck, A., Salazar, N., Taminiau, B., Druart, C., François, E., Blecker, C., Richel, A., Daube, G., Mahillon, J., de los Reyes-Gavilán, C. G., Cani, P. D., & Delzenne, N. M. (October 2014). Non digestible oligosaccharides modulate the gut microbiota to control the development of leukemia and associated cachexia [Paper presentation]. 2nd World Congress on Targeting Microbiota 2014 : towards Clinical Revolution, Paris, France.

Daube, G., & Taminiau, B. (18 September 2014). Les nouveaux outils génomiques, bases pour la caractérisation microbiologique des aliments [Paper presentation]. 19ème conférence de microbiologie des aliments, Bruxelles, Belgium.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (18 September 2014). Relatedness of human, animal and food Clostridium difficile strains [Poster presentation]. 19th Conference of Food Microbiology, Brussels, Belgium.

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Delcenserie, V., Ferauche, C., Picolo, D., Poullet, J. B., & Daube, G. (18 September 2014). Evaluation of the microbiota of “steak tartare” with metagenomic analysis targeting 16S ribosomal DNA [Poster presentation]. Dix-neuvième conférence de microbiologie des aliments, Bruxelles, Belgium.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (September 2014). Multilocus sequence typing analysis and antibiotic resistance of Clostridium difficile strains isolated from retail meat and humans in Belgium. Food Microbiology, 42, 166-171. doi:10.1016/j.fm.2014.03.021
Peer Reviewed verified by ORBi

Abekhti, A., Taminiau, B., Kihla, M., & Daube, G. (01 September 2014). Metagenomic analysis of the bacterial flora linked to the Algerian traditional date product “Btana” [Poster presentation]. FoodMicro 2014, Nantes, France.

Coton, M., Pawtowski, A., Taminiau, B., Taillard, C., Deniel, F., Weill, A., Delhalle, L., Daube, G., & Coton, E. (01 September 2014). Microbial diversity and dynamics during Kombucha fermentation [Poster presentation]. FoodMicro 2014, Nantes, France.

Delhalle, L., Ellouze, M., Taminiau, B., Korsak Koulagenko, N., Nezer, C., & Daube, G. (01 September 2014). Predictive microbiology combined with metagenomic analysis targeted on the 16S rDNA : A new approach for food quality [Poster presentation]. Food Micro 2014, Nantes, France.

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Delcenserie, V., Ferauche, C., Picolo, D., Poullet, J. B., & Daube, G. (01 September 2014). Evaluation of the microbiota of “steak tartare” with metagenomic analysis targeting 16S ribosomal DNA [Poster presentation]. FoodMicro 2014, Nantes, France.

Rodriguez Diaz, C., Taminiau, B., Brévers, B., Avesani, V., Van Broeck, J., Leroux, A., Amory, H., Delmée, M., & Daube, G. (06 August 2014). Carriage and acquisition rates of Clostridium difficile in hospitalized horses, including molecular characterization, multilocus sequence typing and antimicrobial susceptibility of bacterial isolates. Veterinary Microbiology, 172, 309-317. doi:10.1016/j.vetmic.2014.05.013
Peer Reviewed verified by ORBi

Guedda, I., Taminiau, B., Ferjani, A., Boukadida, J., Bertrand, S., & Daube, G. (August 2014). Antimicrobial and molecular analysis of Salmonella serovar Livingstone strains isolated from humans in Tunisia and Belgium. Journal of Infection in Developing Countries, 8, 973-980. doi:10.3855/jidc.3989
Peer Reviewed verified by ORBi

Mauroy, A., Taminiau, B., Nezer, C., Ghurburrun, E., Baurain, D., Daube, G., & Thiry, E. (July 2014). High throughput sequencing analysis reveals genetic variability and selection pressure in different murine norovirus genomic regions during in vitro replication [Poster presentation]. International Union of Microbiological Societies (IUMS 2014) – XIVth International Congress of Bacteriology and Applied Microbiology, XIVth International Congress of Mycology, XVIth International Congress of Virology, Montréal, Canada.

De Maesschalck, C., Nezer, C., Taminiau, B., Daube, G., & Van Immerseel, F. (16 June 2014). Xylo-oligosaccharides improve broiler performance by stimulating butyrate production by Clostridium cluster XIVa strains [Paper presentation]. Rowett-INRA 2014 Gut Microbiology : from sequence to function, Aberdeen, United Kingdom.

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (07 May 2014). Comparison and molecular characterization of animal and human Clostridium difficile strains [Poster presentation]. IAFP 2014 European Symposium on Food Safety, Budapest, Hungary.

Korsak Koulagenko, N., Delhalle, L., Nezer, C., Taminiau, B., Ferauche, C., Delcenserie, V., & Daube, G. (06 May 2014). Study of the microbial flora of steak tartare by metagenomic approach [Poster presentation]. IAFP’s 10th European Symposium on Food Safety, Budapest, Hungary.

Daube, G., & Taminiau, B. (31 March 2014). Caractérisation des populations microbiennes dans les aliments : du phénotype aux génomes [Paper presentation]. Congrès 2014 de la Société française de Microbiologie, Paris, France.

Mauroy, A., Taminiau, B., Nezer, C., Ghurburrun, E., Baurain, D., Daube, G., & Thiry, E. (March 2014). L'analyse par séquençage à haut débit révèle la variabilité génétique et la pression de sélection dans différentes régions génomiques du norovirus murin durant sa réplication in vitro [Paper presentation]. XVIe Journées Francophones de Virologie, Paris, France.

Lugli, G., Milani, C., Turroni, F., Duranti, S., Ferrario, C., Viappiani, A., Mancabelli, L., Mangifesta, M., Taminiau, B., Delcenserie, V., Van Sinderen, D., & Ventura, M. (2014). Investigation of the evolutionary development of the genus bifidobacterium by comparative genomics. Applied and Environmental Microbiology. doi:10.1128/AEM.02004-14
Peer Reviewed verified by ORBi

Pothakos, V., Taminiau, B., Huys, G., Nezer, C., Daube, G., & Devlieghere, F. (2014). Psychrotrophic lactic acid bacteria associated with production batch recalls and sporadic cases of early spoilage in Belgium between 2010 and 2014. International Journal of Food Microbiology, 191, 157-163. doi:10.1016/j.ijfoodmicro.2014.09.013
Peer Reviewed verified by ORBi

Milani, C., Lugli, G., Duranti, S., Turroni, F., Bottacini, F., Mangifesta, M., Sanchez, B., Viappiani, A., Mancabelli, L., Taminiau, B., Delcenserie, V., Barrangou, R., Margolles, A., van Sinderen, D., & Ventura, M. (2014). Genome encyclopaedia of type strains of the genus Bifidobacterium. Applied and Environmental Microbiology. doi:10.1128/AEM.02308-14
Peer Reviewed verified by ORBi

Delcenserie, V., Taminiau, B., Delhalle, L., Nezer, C., Doyen, P., Crevecoeur, S., Roussey, D., Korsak Koulagenko, N., & Daube, G. (2014). Microbiota characterization of a protected designation of origin Belgian cheese: Herve cheese, using metagenomic analysis. Journal of Dairy Science, 97, 1-11. doi:10.3168/jds.2014-8225
Peer Reviewed verified by ORBi

Taminiau, B., Korsak Koulagenko, N., Lemaire, Delcenserie, V., & Daube, G. (2014). Validation of real-time PCR for detection of six major pathogens in seafood products. Food Control, 44, 130-137. doi:10.1016/j.foodcont.2014.03.031
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Korsak Koulagenko, N., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (2014). Clostridium difficile infection in elderly nursing home residents. Anaerobe, 30, 184-187. doi:10.1016/j.anaerobe.2014.08.007
Peer Reviewed verified by ORBi

Degrune, F., Taminiau, B., Dufrêne, M., Bodson, B., Hiel, M.-P., Barbieux, S., Olivier, C., Stroobants, A., Nezer, C., Daube, G., & Vandenbol, M. (11 December 2013). Impact of agricultural practices on soil microbial communities in Belgium [Poster presentation]. 2nd Thünen Symposium on Soil Metagenomics, Braunschweig, Germany.

Didimo Imazaki, P. H., Tahiri, A., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (10 December 2013). Evaluation of the bacterial diversity and its evolution during storage of fresh beef from British and Belgian origins under different atmosphere and temperature conditions [Paper presentation]. BAMST Symposium 2013, Kortrijk, Belgium.

Korsak Koulagenko, N., Delhalle, L., Taminiau, B., Nezer, C., Poullet, J. B., Ferauche, C., Picollo, D., Delcenserie, V., & Daube, G. (06 December 2013). Caractérisation de la microflore de filets américains commercialisés en Belgique par analyse métagénomique ciblant l’ADN ribosomial 16S [Poster presentation]. Septième symposium du GCNAS, Louvain-La-Neuve, Belgium.

Delcenserie, V., Tanimomo, J., Taminiau, B., Daube, G., & Durieux, A. (06 December 2013). Growth optimization of strains belonging to Bifidobacterium crudilactis and B. mongoliense species [Poster presentation]. Septième symposium du GCNAS, Louvain-La-Neuve, Belgium.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Korsak Koulagenko, N., Van Broeck, J., Delmée, M., & Daube, G. (21 November 2013). Clostridium difficile: an emerging zoonotic pathogen ? [Paper presentation]. Diagnostic et surveillance des maladies infectieuses, Brussels, Belgium.

Taminiau, B., Rodriguez Diaz, C., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (07 November 2013). Association of classical microbiology and targeted metagenomic analysis to evaluate the presence of Clostridium difficile in a Belgian nursing home [Paper presentation]. 15th Gut Day Symposium, Groningen, Netherlands.

Delcenserie, V., Taminiau, B., Gavini, F., de Schaetzen, M.-A., Cleenwerck, I., Theves, M., Mahieu, M., & Daube, G. (29 October 2013). Detection and characterization of Bifidobacterium crudilactis and B. mongoliense able to grow during the manufacturing process of French raw milk cheeses. BMC Microbiology, 13, 239. doi:10.1186/1471-2180-13-239
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (22 October 2013). ASSOCIATION OF CLASSICAL MICROBIOLOGY AND TARGETED METAGENOMIC ANALYSIS TO EVALUATE THE PRESENCE OF CLOSTRIDIUM DIFFICILE IN A BELGIAN NURSING HOME [Paper presentation]. ClostPath 2013 Meeting, Palm Cove, Tropical North Queensland, Australia.

Delcenserie, V., Taminiau, B., Delhalle, L., Nezer, C., Doyen, P., Crevecoeur, S., & Daube, G. (16 October 2013). Protected Designation of Origin Belgian cheese microbiota characterized using metagenomic analysis [Poster presentation]. Dix-neuvième colloque du Club des bactéries lactiques, Bordeaux, France.

Abekhti, A., Taminiau, B., & Daube, G. (11 October 2013). Optimisation of DNA extraction from the Algerian traditional date Product « Btana » for bacterial diversity analysis by Pyrosequencing technology [Poster presentation]. Third Scientific Day, Liège, Belgium.

Ngassam Tchamba, C., Leroy, P., Taminiau, B., & Daube, G. (11 October 2013). Évaluation de l'influence du sevrage sur les modifications de la composition de la flore bactérienne intestinale des porcelets [Poster presentation]. Third Scientific Day, Liège, Belgium.

Tanimomo, J., Delcenserie, V., Taminiau, B., Daube, G., & Durieux, A. (11 October 2013). Growth optimization of Bifidobacterium crudilactis and Bifidobacterium mongoliense, two new potential probiotic strains [Poster presentation]. Third Scientific Day, Liège, Belgium.

Rodrigues, A., Taminiau, B., & Daube, G. (11 October 2013). Diversity of psychrophilic and psychrotrophic Clostridium sp. in cattle faecal samples collected at a slaughterhouse [Paper presentation]. Third Scientific Day, Liège, Belgium.

Didimo Imazaki, P. H., Tahiri, A., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (11 October 2013). Bacterial diversity and its evolution during storage of fresh beef from different origins under different atmosphere and temperature conditions [Poster presentation]. 3rd FMV Scientific Meeting, Liège, Belgium.

Delhalle, L., Taminiau, B., Ellouze, M., Nezer, C., & Daube, G. (2013). Predictive microbiology combined with metagenomic analysis targeted on the 16S rDNA : A new approach for food quality. In M. Ellouze & F. Tenenhaus-Aziza (Eds.), Proceedings of thge 8th International Conference on predictive microbiology in foods (ICPMF8) (pp. 223-224). Paris, France: Institut Pasteur.
Peer reviewed

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Delmée, M., & Daube, G. (13 September 2013). Clostridium difficile in pigs and cattle at slaughterhouse, carcass contamination and prevalence in retail meat in Belgium [Paper presentation]. Eighteenth Conference on Food Microbiology, Brussels, Belgium.

Rodrigues, A., Taminiau, B., & Daube, G. (July 2013). Prevalence of Clostridium estertheticum and Clostridium gasigenes in cattle at a slaughterhouse in Belgium [Poster presentation]. Microbial Spoilers in food 2013, Quimper, France.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (01 July 2013). Metagenomic analysis targeted on the 16S ribosomal DNA to study the quality of meat : a example with raw minced beef meat [Poster presentation]. Microbial Spoilers in Food - July 1st 2nd 3rd, 2013, Quimper, France.

Taminiau, B., Delhalle, L., Rodriguez Diaz, C., Nezer, C., Crevecoeur, S., Piccolo, D., & Daube, G. (01 July 2013). Impact of the use of lactic/diacetic acids on the microbial diversity of white pudding samples during ageing under various conditions, with the use of next-gen sequencing and targeted metagenomic approach [Poster presentation]. Microbial Spoilers in Food, Quimper, France.

Bardiau, M., Yamazaki, K., Duprez, J.-N., Taminiau, B., Mainil, J., & Ote, I. (May 2013). Genotypic and phenotypic characterisation of methicillin-resistant Staphylococcus aureus (MRSA) isolated from milk of bovine mastitis. Letters in Applied Microbiology, 57, 181-186. doi:10.1111/lam.12099
Peer Reviewed verified by ORBi

Boko, C., Kpodekon, T., Duprez, J.-N., Imberechts, H., Taminiau, B., Bertrand, S., & Mainil, J. (2013). Identification and typing of Salmonella serotypes isolated from guinea fowl (Numida meleagris) farms in Benin during four laying seasons (2007-2010). Avian Pathology, 42, 1-8. doi:10.1080/03079457.2012.751484
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Avesani, V., Van Broeck, J., Taminiau, B., Delmee, M., & Daube, G. (2013). Presence of Clostridium difficile in pigs and cattle intestinal contents and carcass contamination at the slaughterhouse in Belgium. International Journal of Food Microbiology, 166 (2), 256-262. doi:10.1016/j.ijfoodmicro.2013.07.017
Peer Reviewed verified by ORBi

Rodriguez Diaz, C., Taminiau, B., Vandebroek, J., Avesani, V., Delmée, M., & Daube, G. (18 December 2012). Clostridium difficile in young farm animals and slaughter animals in Belgium. Anaerobe, 18 (6), 621-625. doi:10.1016/j.anaerobe.2012.09.008
Peer Reviewed verified by ORBi

Didimo Imazaki, P. H., Tahiri, A., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (December 2012). La diversité bactérienne et son évolution pendant la conservation de viandes bovines fraîches de différentes origines conditionnées sous vide [Poster presentation]. 19e Journées 3R Rencontres Recherches Ruminants, Paris, France.

Didimo Imazaki, P. H., Tahiri, A., Baptista Rodrigues, A. L., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (13 November 2012). Viandes bovines à longue durée de conservation conditionnées sous vide : isolement et caractérisation de souches de Carnobacterium [Poster presentation]. 14èmes Journées Sciences du Muscle et Technologies des Viandes, Caen, France.

Taminiau, B., Nezer, C., Adolphe, Y., Delhalle, L., Clinquart, A., & Daube, G. (13 November 2012). Validation de la qualité de la viande hachée de porc par une approche métagénomique ciblée [Paper presentation]. 14èmes Journées des Sciences du Muscle et Technologies des Viandes, Caen, France.

Delhalle, L., Nezer, C., Darcis, A., Taminiau, B., & Daube, G. (19 October 2012). The extraordinary potential of metagenomic tools for food microbiology: an example with microbiota of four cheeses [Poster presentation]. Dix-septième conférence de microbiologie des aliments, Bruxelles, Belgium.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (19 October 2012). Study of the microbial flora of freshwater and seawater fish filets in different packaging conditions by metagenomic analysis targeted on the 16S ribosomal DNA [Paper presentation]. 2nd Scientific day, Liege, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Delmée, M., & Daube, G. (22 September 2012). Clostridium difficile in intestinal contents and on carcasses of pigs and cattle at slaughterhouse in Belgium [Poster presentation]. 4th International Clostridium difficile Symposium, Bled, Slovenia.

Taminiau, B., Nezer, C., Delhalle, L., Adolphe, Y., Didimo Imazaki, P. H., Clinquart, A., & Daube, G. (21 September 2012). L’analyse métagénomique ciblée au service de la microbiologie des aliments : applications concrètes [Paper presentation]. Seventeenth Conference on Food Microbiology, Bruxelles, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Delmée, M., & Daube, G. (20 September 2012). Clostridium difficile is present in retail meat in Belgium [Poster presentation]. 17th Conference on Food Microbiology, Brussels, Belgium.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (20 September 2012). Study of the microbial flora of freshwater and seawater fish filets in different packaging conditions by metagenomic analysis targeted on the 16S ribosomal DNA [Paper presentation]. Dix-septième conférence de microbiologie des aliments, Bruxelles, Belgium.

Taminiau, B., Delhalle, L., Nezer, C., & Daube, G. (04 September 2012). Molecular identification of the bacterial populations of steak tartare, a raw consumed meat preparation: a practical use of targeted metagenomic analysis [Poster presentation]. Food Micro 2012, Istanbul, Turkey.

Taminiau, B., Delhalle, L., Nezer, C., Adolphe, Y., Didimo Imazaki, P. H., Clinquart, A., & Daube, G. (04 September 2012). Metagenomic analysis as a tool to better characterize the bacterial content of food and food preparations [Paper presentation]. Food Micro 2012, Istanbul, Turkey.

Delhalle, L., Taminiau, B., Nezer, C., Darcis, A., & Daube, G. (03 September 2012). A new approach of food microbiology with the metagenomic tools: an application on fish [Poster presentation]. FoodMicro 2012, Istambul, Turkey.

Delhalle, L., Nezer, C., Darcis, A., Taminiau, B., & Daube, G. (03 September 2012). The extraordinary potential of metagenomic tools for food microbiology: an example with microbiota of four cheeses [Poster presentation]. Second scientific meeting of the veterinary medicine of the University of Liège, Liège, Belgium.

Delhalle, L., Nezer, C., Taminiau, B., Darcis, A., & Daube, G. (03 September 2012). The extraordinary potential of metagenomic tools for food microbiology: an example with bacterial microbiota of raw and pasteurized milk cheeses [Poster presentation]. Food Micro 2012, Istambul, Turkey.

Taminiau, B., Nezer, C., Poullet, J.-B., Adolphe, Y., Clinquart, A., & Daube, G. (23 July 2012). The Metagenomic in the Service of the Food Microbiology [Poster presentation]. International Association for Food Protection 2012 Meeting, Rhode Island, United States.

Taminiau, B., Delhalle, L., Nezer, C., & Daube, G. (24 May 2012). Etude de la flore bactérienne de steacks tartares prélevés en boucherie, sandwicherie et restaurant par analyse métagénomique ciblée sur l’ADN ribosomial 16S [Poster presentation]. XVIII Colloque du Club des Bactéries Lactiques - 2012, Clermont-Ferrand, France.

Taminiau, B., Nezer, C., Delhalle, L., Adolphe, Y., Imazaki, P., Clinquart, A., & Daube, G. (23 May 2012). L’analyse métagénomique ciblée au service de la microbiologie des aliments : applications concrètes [Paper presentation]. XVIII Colloque du Club des Bactéries Lactiques - 2012, Clermont-Ferrand, France.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (22 May 2012). Une nouvelle approche de la microbiologie alimentaire avec l’analyse métagénomique : un exemple avec une analyse de filets de poisson [Poster presentation]. Club des Bactéries Lactiques, Clermont Ferrand, France.

Delhalle, L., Nezer, C., Darcis, A., Taminiau, B., & Daube, G. (22 May 2012). L’extraordinaire potentiel de l’approche métagénomique en microbiologie des aliments: analyse du microbiote de fromages au lait cru et pasteurisé [Poster presentation]. Club des Bactéries Lactiques, Clermont Ferrand, France.

Rodrigues, A., Taminiau, B., & Daube, G. (18 April 2012). Psychrotrophic and psychrophylic Clostridium responsible for meat spoilage [Poster presentation]. Biomedica 2012, Liège, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Delmee, M., & Daube, G. (18 April 2012). Clostridium difficile in farm and slaughter animals in Belgium: detection and characterization [Poster presentation]. Biomedica, Liège, Belgium.

Didimo Imazaki, P. H., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (April 2012). Study of the microbial diversity in vacuum-packed chilled beef from different origins through a metagenomics approach [Poster presentation]. Biomedica 2012, Liège, Belgium.

Bardiau, M., Taminiau, B., Duprez, J.-N., Labrozzo, S., & Mainil, J. (2012). Comparison between a bovine and a human enterohaemorrhagic Escherichia coli strain of serogroup O26 by suppressive substractive hybridization reveals the presence of atypical factors in EHEC and EPEC strains. FEMS Microbiology Letters, 330 (2), 132-139.
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Rodriguez Diaz, C., Taminiau, B., van Broeck, J., Delmée, M., & Daube, G. (09 December 2011). Clostridium difficile in farm and slaughterhouse animals: prevalence and typing [Paper presentation]. 1ST Scientific Meeting of the Faculty of Veterinary Medicine, Liège, Belgium.

Taminiau, B., Nezer, C., Poullet, J.-B., Adolphe, Y., Clinquart, A., & Daube, G. (09 December 2011). La métagénomique au service de la microbiologie alimentaire : étude de l’évolution des populations microbiennes lors du vieillissement de deux matrices alimentaires [Paper presentation]. First scientific meeting of the veterinary medicine of the University of Liège, Liège, Belgium.

Didimo Imazaki, P. H., Nezer, C., Taminiau, B., Daube, G., & Clinquart, A. (09 December 2011). Caractérisation des viandes bovines à très longue durée de conservation sous vide [Poster presentation]. 1st Scientific Meeting of the Faculty of Veterinary Medicine, Liège, Belgium.

Didimo Imazaki, P. H., Maréchal, A., Nezer, C., Taminiau, B., Daube, G., & Clinquart, A. (18 November 2011). Evaluation de la diversité bactérienne et de son évolution pendant la conservation de la viande fraîche bovine de différentes origines emballée sous vide [Poster presentation]. Ecosystèmes Microbiens et Bioprotection des Aliments, Nantes, France.

Taminiau, B., Nezer, C., Poullet, J.-B., Adolphe, Y., Clinquart, A., & Daube, G. (17 November 2011). La métagénomique au service de la microbiologie alimentaire : étude de l’évolution des populations microbiennes lors du vieillissement de deux matrices alimentaires [Paper presentation]. Ecosystèmes Microbiens et Bioprotection des Aliments, Nantes, France.

Baptista Rodrigues, A. L., Taminiau, B., & Daube, G. (23 September 2011). Clostridium altérants et pathogènes de la viande crue/Clostridium bederforganisme en pathogeen van rauw vlees [Paper presentation]. Belgian Conference on Food Microbiology.

Didimo Imazaki, P. H., Maréchal, A., Nezer, C., Taminiau, B., Daube, G., & Clinquart, A. (07 August 2011). Influence of temperature on conservability of chilled vacuum packed beef from different origins [Poster presentation]. 57th International Congress of Meat Science and Technology, Gand, Belgium.

Ote, I., Taminiau, B., Duprez, J.-N., Dizier, I., & Mainil, J. (2011). Genotypic characterization by polymerase chain reaction of Staphylococcus aureus isolates associated with bovine mastitis. Veterinary Microbiology, 153, 285-292. doi:10.1016/j.vetmic.2011.05.042
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Kouamé-Sina, S. M., Dadié, A., Makita, K., Grace, D., Dje, M., Taminiau, B., Daube, G., & Bonfoh, B. (2011). Diversity, phylogenetic relationship and antibacterial potential of Bifidobacterium species isolated from raw milk production chain in Abidjan (Côte d'Ivoire). African Journal of Microbiology Research, 5 (21), 3394-3403.
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Filée, P., Rhazi, N., Galleni, M., Taminiau, B., Jolois, O., Collard, A., & Jacquet, A. (22 July 2010). A recombinant alpha-hemolysin polypeptide of Staphylococcus aureus, having deletion in the stem domain and heterologous sequences inserted.

Muylaert, A., Lebrun, M., Duprez, J.-N., Labrozzo, S., Theys, H., Taminiau, B., & Mainil, J. (2010). Enterotoxaemia-like syndrome and Clostridium perfringens in veal calves. Veterinary Record, 167, 64-65. doi:10.1136/vr.b4869
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Kadja, M. C., Kpodekon, M., Kane, Y., Tchassou, K., Kaboret, Y., Mainil, J., & Taminiau, B. (2010). Typing of Staphylococcus aureus strains isolated from milk of cows with subclinical mastitis in Dakar, Senegal. Bulletin of Animal Health and Production in Africa, 58, 95-205.
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Loret, S., Rusu, D., Moualij, B. E., Taminiau, B., Heinen, E., Dandrifosse, G., & Mainil, J. (2009). Preliminary characterization of jejunocyte and colonocyte cell lines isolated by enzymatic digestion from adult and young cattle. Research in Veterinary Science, 87 (1), 123-32. doi:10.1016/j.rvsc.2008.12.002
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Lebrun, M., Filée, P., Galleni, M., Mainil, J., Linden, A., & Taminiau, B. (September 2007). Purification of the recombinant beta2 toxin (CPB2) from an enterotoxaemic bovine Clostridium perfringens strain and production of a specific immune serum. Protein Expression and Purification, 55 (1), 119-131. doi:10.1016/j.pep.2007.04.021
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Szalo, I. M., Taminiau, B., & Mainil, J. (2006). Le lipopolysaccharide d’Escherichia coli : structure, biosynthèse et rôles. Annales de Médecine Vétérinaire, 150 (2), 108-124.
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Malik, A., Toth, I., Beutin, L., Scmidt, H., Taminiau, B., Dow, M. A., Oswald, E., Mainil, J., & Nagy, B. (2006). Serotypes and intimin types of intestinal and faecal strains of eae+ Escherichia coli from weaned pigs. Veterinary Microbiology, 114, 82-93. doi:10.1016/j.vetmic.2005.11.044
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Szalo, I. M., Taminiau, B., Goffaux, F., Pirson, V., McCappin, J., Ball, H., & Mainil, J. (May 2004). 2F3 Monoclonal Antibody Recognizes the O26 O-Antigen Moiety of the Lipopolysaccharide of Enterohemorrhagic Escherichia coli Strain 4276. Clinical and Diagnostic Laboratory Immunology, 11 (3), 532-537. doi:10.1128/CDLI.11.3.532-537.2004
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Letesson, J.-J., Lestrate, P., Delrue, R.-M., DANESE, I., Bellefontaine, F., Fretin, D., Taminiau, B., Tibor, A., Dricot, A., Deschamps, C., Haine, V., LEONARD, S., LAURENT, T., Mertens, P., Vandenhaute, J., & De Bolle, X. (December 2002). Fun stories about Brucella: the "furtive nasty bug". Veterinary Microbiology, 90 (1-4), 317-28. doi:10.1016/S0378-1135(02)00208-0
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Godfroid, F., Cloeckaert, A., Taminiau, B., DANESE, I., Tibor, A., de Bolle, X., Fonck, P., & Letesson, J. J. (2000). Genetic organisation of the lipopolysaccharide O-antigen biosynthesis region of brucella melitensis 16M (wbk). Research in Microbiology, 151 (8), 655-68. doi:10.1016/S0923-2508(00)90130-X
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Lestrate, P., Delrue, R. M., DANESE, I., Didembourg, C., Taminiau, B., Fonck, P., De Bolle, X., Tibor, A., Tang, C. M., & Letesson, J. J. (2000). Identification and characterization of in vivo attenuated mutants of Brucella melitensis. Molecular Microbiology, 38 (3), 543-51. doi:10.1046/j.1365-2958.2000.02150.x
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Godfroid, F., Taminiau, B., DANESE, I., Denoel, P., Tibor, A., Weynants, V., Cloeckaert, A., Godfroid, J., & Letesson, J. J. (1998). Identification of the perosamine synthetase gene of Brucella melitensis 16M and involvement of lipopolysaccharide O side chain in Brucella survival in mice and in macrophages. Infection and Immunity, 66 (11), 5485-93. doi:10.1128/iai.66.11.5485-5493.1998
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