[en] Extracellular vesicles (EVs) are known to facilitate infection by enveloped RNA viruses including the Human T-cell leukemia virus type-1 (HTLV-1). HTLV-1-encoded proteins, like the transactivator and oncoprotein Tax-1, are loaded into EVs but their precise impact on EV cargos is not yet known. Here, we report a comprehensive interaction map between Tax-1 and the human PDZ (PSD95/DLG/ZO-1) proteins that regulate EVs formation and composition. We show that Tax-1 interacts with more than one-third of hPDZome components, including proteins involved in cell cycle, cell-cell junctions, cytoskeleton organization and membrane complex assembly. We extensively characterized Tax-1 interaction with syntenin-1, an evolutionary conserved PDZ hub that controls EV biogenesis. Using nuclear magnetic resonance (NMR) spectroscopy, we have determined the structural basis of the interaction between the C-terminal PDZ binding motif of Tax-1, and two PDZ domains of syntenin-1. Importantly, we show that a small molecule able to inhibit HTLV-1 cell-to-cell transmission breaks the Tax-1/syntenin-1 interaction, impacts the levels of syntenin-1 and viral proteins in EVs, and shifts the EV composition toward cellular antiviral proteins and microRNAs, including the miR-320 family. Consequently, we demonstrate that mimics of miR-320c, encapsulated into EVs, have antiviral activities with a potential to be used against HTLV-1 induced diseases.
Ntombela, Thandokuhle ; Université de Liège - ULiège > Département GxABT > Microbial technologies
Van Molle, Inge; VIB-VUB Center for Structural Biology, Flemish Institute of Biotechnology (VIB), Pleinlaan 2, Brussels, Belgium
Joseph, Julie; Department of Microbiology & Immunology, Drexel University College of Medicine, Philadelphia, Pennsylvania, USA
Olivet, Julien ; Université de Liège - ULiège > GIGA > GIGA Molecular & Computational Biology - Viral Interactomes Network ; Structural Biology Lab, Molecular Structural & Translational Virology Group, Rega Institute for Medical Research and Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium
Saha, Deeya ; Université de Liège - ULiège > Agronomie, Bio-ingénierie et Chimie (AgroBioChem) > Microbial technologies ; Dept. Of Biotechnology, Faculty of Life and Allied Health Sciences (FLAHS), M.S Ramaiah University of Applied Sciences (MSRUAS), Bangalore, India
Degey, Manon ; Université de Liège - ULiège > Unités de recherche interfacultaires > Centre Interdisciplinaire de Recherche sur le Médicament (CIRM)
Hamaïdia, Malik ; Université de Liège - ULiège > Département GxABT > Microbial technologies
Jain, Pooja ; Department of Microbiology & Immunology, Drexel University College of Medicine, Philadelphia, Pennsylvania, USA
Geraldine, Piel; Laboratoire de Technologie Pharmaceutique & Biopharmacie (LTPB), CIRM, University of Liège, Liège, Belgium
Zimmermann, Pascale ; Aix Marseille Univ, CNRS, INSERM, Institut Paoli-Calmettes, CRCM, Equipe labellisée Ligue Cell polarity, Cell signaling and Cancer, Marseille, France ; Department of Human Genetics, KU Leuven, Leuven, Belgium
Kim, Dae-Kyum; Division of Thoracic and Upper Gastrointestinal Surgery, Department of Surgery, Faculty of Medicine and Health Sciences, McGill University, Montreal, Canada ; Cancer Research Program, Research Institute of McGill University Health Centre, Montreal, Canada ; Montreal General Hospital Foundation, McGill University Health Centre, Montreal, Canada
Baiwir, Dominique ; Université de Liège - ULiège > Département des sciences biomédicales et précliniques
Dequiedt, Franck ; Université de Liège - ULiège > Département des sciences de la vie > Génétique et biologie moléculaires animales
Salehi-Ashtiani, Kourosh; Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
Ballet, Steven; Research Group of Organic Chemistry, Vrije Universiteit Brussel (VUB), Brussels, Belgium
Volkov, Alexander N; VIB-VUB Center for Structural Biology, Flemish Institute of Biotechnology (VIB), Pleinlaan 2, Brussels, Belgium ; Jean Jeener NMR Centre, Vrije Universiteit Brussel (VUB), Pleinlaan 2, Brussels, Belgium
Twizere, Jean-Claude ✱; Université de Liège - ULiège > GIGA > GIGA Molecular & Computational Biology - Viral Interactomes Network ; Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
This work was primarily supported by the FWO-FRS-FNRS Weave grant TW01423F to Steven Ballet, Jean-Claude Twizere and Alexander N. Volkov, FRS-FNRS Televie grants 30823819 to Jean-Claude Twizere; Fund for Research Training in Industry and Agriculture grant 24343558 to Karim Blibek. Franck Dequiedt is a Chercheur Qualifi\u00E9 Honoraire, Jean-Claude Twizere a Research Director, Sibusiso B. Maseko is a postdoctoral fellow of the F.R.S.-FNRS. Sibusiso B. Maseko is further supported by the Funds Suzanne Dechesne, Serge Rousseau and Docteur Jean Gerald, Managed by King Boudouin Foundation. Pascale Zimmermann's lab work was funded by La Ligue Nationale Contre le Cancer (Label 2018), the Fund for Scientific Research Flanders (FWO, G0C5718N) and the internal funds of the KU Leuven (C14/20/105). Q Exactive mass spectrometer (GIGA Proteomics Facility) was acquired thanks to EDRF and Walloon Region funding. This research was also supported by NYUAD Faculty Research Funds (AD060) from the Division of Science (NYUAD, UAE) The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Computational resources have been provided by the Consortium des \u00C9quipements de Calcul Intensif (C\u00C9CI), funded by the Fonds de la Recherche Scientifique (FRS-FNRS, Belgium) under Grant No. 2.5020.11 and by the Walloon Region. We thank the Genomics, Bioinformatics, Proteomics and Viral Vectors core facilities of the University of Liege for their services.Computational resources have been provided by the Consortium des \u00C9quipements de Calcul Intensif (C\u00C9CI), funded by the Fonds de la Recherche Scientifique (FRS\u2010FNRS, Belgium) under Grant No. 2.5020.11 and by the Walloon Region. We thank the Genomics, Bioinformatics, Proteomics and Viral Vectors core facilities of the University of Liege for their services.: This work was primarily supported by the FWO\u2010FRS\u2010FNRS Weave grant TW01423F to Steven Ballet, Jean\u2010Claude Twizere and Alexander N. Volkov, FRS\u2010FNRS Televie grants 30823819 to Jean\u2010Claude Twizere; Fund for Research Training in Industry and Agriculture grant 24343558 to Karim Blibek. Franck Dequiedt is a Chercheur Qualifi\u00E9 Honoraire, Jean\u2010Claude Twizere a Research Director, Sibusiso B. Maseko is a postdoctoral fellow of the F.R.S.\u2010FNRS. Sibusiso B. Maseko is further supported by the Funds Suzanne Dechesne, Serge Rousseau and Docteur Jean Gerald, Managed by King Boudouin Foundation. Pascale Zimmermann's lab work was funded by La Ligue Nationale Contre le Cancer (Label 2018), the Fund for Scientific Research Flanders (FWO, G0C5718N) and the internal funds of the KU Leuven (C14/20/105). Q Exactive mass spectrometer (GIGA Proteomics Facility) was acquired thanks to EDRF and Walloon Region funding. This research was also supported by NYUAD Faculty Research Funds (AD060) from the Division of Science (NYUAD, UAE) The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Funding
Alais, S., H. Dutartre, and R. Mahieux. 2017. “Quantitative Analysis of Human T-Lymphotropic Virus Type 1 (HTLV-1) Infection Using Co-Culture With Jurkat LTR-Luciferase or Jurkat LTR-GFP Reporter Cells.” Methods in Molecular Biology 1582: 47–55.
Al Sharif, S., D. O. Pinto, G. A. Mensah, et al. 2020. “Extracellular Vesicles in HTLV-1 Communication: The Story of an Invisible Messenger.” Viruses 12, no. 12: 1422.
Amacher, J. F., L. Brooks, T. H. Hampton, and D. R. Madden. 2020. “Specificity in PDZ-Peptide Interaction Networks: Computational Analysis and Review.” Journal of Structural Biology X 4: 100022.
Amaral, A. J., J. Andrade, R. B. Foxall, et al. 2017. “miRNA Profiling of Human Naive CD4 T Cells Links miR-34c-5p to Cell Activation and HIV Replication.” EMBO Journal 36, no. 3: 346–360.
Ambros, V. 2003. “MicroRNA Pathways in Flies and Worms: Growth, Death, Fat, Stress, and Timing.” Cell 113, no. 6: 673–676.
Ambros, V. 2024. “MicroRNA-Mediated Gene Regulation and the Resilience of Multicellular Animals.” Postepy Biochemii 70, no. 1: 62–70.
Anderson, M. R., F. Kashanchi, and S. Jacobson. 2016. “Exosomes in Viral Disease.” Neurotherapeutics 13, no. 3: 535–546.
Arone, C., S. Martial, J. Burlaud-Gaillard, et al. 2023. “HTLV-1 Biofilm Polarization Maintained by Tetraspanin CD82 Is Required for Efficient Viral Transmission.” mBio 14, no. 6: e01326-23.
Baietti, M. F., Z. Zhang, E. Mortier, et al. 2012. “Syndecan–Syntenin–ALIX Regulates the Biogenesis of Exosomes.” Nature Cell Biology 14, no. 7: 677–685.
Bangham, C. R. 2000. “HTLV-1 Infections.” Journal of Clinical Pathology 53, no. 8: 581–586.
Bangham, C. R. M., A. Araujo, Y. Yamano, and G. P. Taylor. 2015. “HTLV-1-Associated Myelopathy/Tropical Spastic Paraparesis.” Nature Reviews Disease Primers 1: 15012.
Barnard, A. L., T. Igakura, Y. Tanaka, G. P. Taylor, and C. R. M. Bangham. 2005. “Engagement of Specific T-Cell Surface Molecules Regulates Cytoskeletal Polarization in HTLV-1-Infected Lymphocytes.” Blood 106, no. 3: 988–995.
Baryshnikova, A. 2016. “Systematic Functional Annotation and Visualization of Biological Networks.” Cell Systems 2, no. 6: 412–421.
Bazarbachi, A. 2016. “Tax Fingerprint in Adult T-Cell Leukemia.” Blood 127, no. 14: 1737–1738.
Boxus, M., J.-C. Twizere, S. Legros, J.-F. Dewulf, R. Kettmann, and L. Willems. 2008. “The HTLV-1 Tax Interactome.” Retrovirology 5: 76.
Caillet-Saguy, C., F. Durbesson, V. V. Rezelj, et al. 2021. “Host PDZ-Containing Proteins Targeted by SARS-CoV-2.” FEBS Journal 288, no. 17: 5148–5162.
Caillet-Saguy, C., and N. Wolff. 2021. “PDZ-Containing Proteins Targeted by the ACE2 Receptor.” Viruses 13, no. 11: 2281.
Capone, E., S. Iacobelli, and G. Sala. 2021. “Role of Galectin 3 Binding Protein in Cancer Progression: A Potential Novel Therapeutic Target.” Journal of Translational Medicine 19, no. 1: 405.
Cassonnet, P., C. Rolloy, G. Neveu, et al. 2011. “Benchmarking a Luciferase Complementation Assay for Detecting Protein Complexes.” Nature Methods 8, no. 12: 990–992.
Castro-Cruz, M., L. Hyka, G. Daaboul, et al. 2023. “PDZ Scaffolds Regulate Extracellular Vesicle Production, Composition, and Uptake.” Proceedings of the National Academy of Sciences 120, no. 38: e2310914120.
Cierpicki, T., J. H. Bushweller, and Z. S. Derewenda. 2005. “Probing the Supramodular Architecture of a Multidomain Protein: The Structure of Syntenin in Solution.” Structure (London, England) 13, no. 2: 319–327.
Cook, L., A. Melamed, H. Yaguchi, and C. R. M. Bangham. 2017. “The Impact of HTLV-1 on the Cellular Genome.” Current Opinion in Virology 26: 125–131.
Cox, J., and M. Mann. 2008. “MaxQuant Enables High Peptide Identification Rates, Individualized p.p.b.-Range Mass Accuracies and Proteome-Wide Protein Quantification.” Nature Biotechnology 26, no. 12: 1367–1372.
Currer, R., R. Van Duyne, E. Jaworski, et al. 2012. “HTLV Tax: A Fascinating Multifunctional Co-Regulator of Viral and Cellular Pathways.” Frontiers in Microbiology 3: 406.
Delaglio, F., S. Grzesiek, G. Vuister, G. Zhu, J. Pfeifer, and A. D. Bax. 1995. “NMRPipe: A Multidimensional Spectral Processing System Based on UNIX Pipes.” Journal of Biomolecular NMR 6, no. 3: 277–293.
Du, X., Y. Yang, G. Xiao, et al. 2020. “Respiratory Syncytial Virus Infection-Induced Mucus Secretion by Down-Regulation of miR-34b/c-5p Expression in Airway Epithelial Cells.” Journal of Cellular and Molecular Medicine 24, no. 21: 12694–12705.
Duecker, R. P., E. H. Adam, S. Wirtz, et al. 2021. “The MiR-320 Family Is Strongly Downregulated in Patients With COVID-19 Induced Severe Respiratory Failure.” International Journal of Molecular Sciences 22, no. 19: 10351.
Fakhar, A. Z., J. Liu, and K. M. Pajerowska-Mukhtar. 2023. “Dynamic Enrichment for Evaluation of Protein Networks (DEEPN): a High Throughput Yeast Two-Hybrid (Y2H) Protocol to Evaluate Networks.” Methods in Molecular Biology 2690: 179–192.
Fawzy, M. P., H. A. F. M. Hassan, N. K. Sedky, M. S. Nafie, R. A. Youness, and S. A. Fahmy. 2024. “Revolutionizing Cancer Therapy: Nanoformulation of miRNA-34 – Enhancing Delivery and Efficacy for Various Cancer Immunotherapies: A Review.” Nanoscale Advances 6, no. 21: 5220–5257.
Fischer, S. E., Q. Pan, P. C. Breen, et al. 2013. “Multiple Small RNA Pathways Regulate the Silencing of Repeated and Foreign Genes in C. elegans.” Genes & Development 27, no. 24: 2678–2695.
Fujikawa, D., S. Nakagawa, M. Hori, et al. 2016. “Polycomb-Dependent Epigenetic Landscape in Adult T-Cell Leukemia.” Blood 127, no. 14: 1790–1802.
Galloway, N. L. K., G. Doitsh, K. M. Monroe, et al. 2015. “Cell-to-Cell Transmission of HIV-1 Is Required to Trigger Pyroptotic Death of Lymphoid-Tissue-Derived CD4 T Cells.” Cell Reports 12, no. 10: 1555–1563.
Grembecka, J., T. Cierpicki, Y. Devedjiev, et al. 2006. “The Binding of the PDZ Tandem of Syntenin to Target Proteins.” Biochemistry 45, no. 11: 3674–3683.
He, B., A. Sridhar, M. Thiry, O. Haenen, A. F. C. Vanderplasschen, and O. Donohoe. 2025. “Genomic and Phenotypic Characterization of a Novel Virulent Strain of Cyvirus Cyprinidallo 2 Originating From an Outbreak in the Netherlands.” Viruses 17, no. 5: 658.
Human, T. 2008. “Highly Enhanced Expression of CD70 On.” Journal of Virology 82, no. 8: 3843.
Igakura, T., J. C. Stinchcombe, P. K. C. Goon, et al. 2003. “Spread of HTLV-I Between Lymphocytes by Virus-Induced Polarization of the Cytoskeleton.” Science 299, no. 5613: 1713–1716.
Imjeti, N. S., K. Menck, A. L. Egea-Jimenez, et al. 2017. “Syntenin Mediates SRC Function in Exosomal Cell-to-Cell Communication.” PNAS 114, no. 47: 12495–12500.
Ivarsson, Y., R. Arnold, M. Mclaughlin, et al. 2014. “Large-Scale Interaction Profiling of PDZ Domains Through Proteomic Peptide-Phage Display Using Human and Viral Phage Peptidomes.” PNAS 111, no. 7: 2542–2547.
Jaworski, E., A. Narayanan, R. Van Duyne, et al. 2014. “Human T-Lymphotropic Virus Type 1-Infected Cells Secrete Exosomes That Contain Tax Protein.” Journal of Biological Chemistry 289, no. 32: 22284–22305.
Jimenez-Guardeño, J. M., J. L. Nieto-Torres, M. L. Dediego, et al. 2014. “The PDZ-Binding Motif of Severe Acute respiratory Syndrome Coronavirus Envelope Protein Is a Determinant of Viral Pathogenesis.” PLOS Pathogens 10, no. 8: e1004320.
Jones, D. 2018. “Setbacks Shadow microRNA Therapies in the Clinic.” Nature Biotechnology 36, no. 10: 909–910.
Jørgensen, K., M. Skrede, V. Cruciani, S. - O. Mikalsen, A. Slipicevic, and V. A. Flørenes. 2005. “Phorbol ester phorbol-12-myristate-13-acetate promotes anchorage-independent growth and survival of melanomas through MEK-independent activation of ERK1/2.” Biochemical and Biophysical Research Communications 329, no. 1: 266–274. https://doi.org/10.1016/j.bbrc.2005.01.143.
Kannt, A., S. Young, and D. S. Bendall. 1996. “The Role of Acidic Residues of Plastocyanin in Its Interaction With Cytochrome f.” Biochimica et Biophysica Acta (BBA)—Bioenergetics 1277, no. 1: 115–126.
Kashyap, R., M. Balzano, B. Lechat, et al. 2021. “Syntenin-Knock Out Reduces Exosome Turnover and Viral Transduction.” Scientific Reports 11, no. 1: 4083.
Kfoury, Y., R. Nasr, C. Journo, R. Mahieux, C. Pique, and A. Bazarbachi. 2012. “The Multifaceted Oncoprotein Tax: Subcellular Localization, Posttranslational Modifications, and NF-κB Activation.” Advances in Cancer Research 113: 85–120.
Kim, D.-K., J. Lee, S. R. Kim, et al. 2015. “EVpedia: A Community Web Portal for Extracellular Vesicles Research.” Bioinformatics 31, no. 6: 933–939.
Kim, Y., G. A. Mensah, S. Al Sharif, et al. 2021. “Extracellular Vesicles From Infected Cells Are Released Prior to Virion Release.” Cells 10, no. 4: 781.
Kimata, J. T., F.-H. Wong, J. J. Wang, and L. Ratner. 1994. “Construction and Characterization of Infectious Human T-Cell Leukemia Virus Type 1 Molecular Clones.” Virology 204, no. 2: 656–664.
Kowal, J., M. Tkach, and C. Théry. 2014. “Biogenesis and Secretion of Exosomes.” Current Opinion in Cell Biology 29: 116–125.
Kozomara, A., M. Birgaoanu, and S. Griffiths-Jones. 2019. “miRBase: From microRNA Sequences to Function.” Nucleic Acids Research 47, no. D1: D155–D162.
Kwok, R. P. S., M. E. Laurance, J. R. Lundblad, et al. 1996. “Control of cAMP-Regulated Enhancers by the Viral Transactivator Tax Through CREB and the Co-Activator CBP.” Nature 380, no. 6575: 642–646.
Lambourne, L., A. Yadav, Y. Wang, et al. 2021. “Binary Interactome Models of Inner-Versus Outer-Complexome Organisation.” BioRxiv 03. 16.435663.
Latysheva, N., G. Muratov, S. Rajesh, et al. 2006. “Syntenin-1 Is a New Component of Tetraspanin-Enriched Microdomains: Mechanisms and Consequences of the Interaction of Syntenin-1 With CD63.” Molecular and Cellular Biology 26, no. 20: 7707–7718.
Leblanc, R., R. Kashyap, K. Barral, et al. 2020. “Pharmacological Inhibition of Syntenin PDZ2 Domain Impairs Breast Cancer Cell Activities and Exosome Loading With Syndecan and EpCAM Cargo.” Journal of Extracellular Vesicles 10, no. 2: e12039.
Lee, K.-M., E.-C. Seo, J.-H. Lee, H.-J. Kim, and C. Hwangbo. 2023. “The Multifunctional Protein Syntenin-1: Regulator of Exosome Biogenesis, Cellular Function, and Tumor Progression.” International Journal of Molecular Sciences 24, no. 11: 9418.
Lee, R. C., and V. Ambros. 2001. “An Extensive Class of Small RNAs in Caenorhabditis elegans.” Science 294, no. 5543: 862–864.
Liang, Y., S. Li, and L. Tang. 2021. “MicroRNA 320, an Anti-Oncogene Target miRNA for Cancer Therapy.” Biomedicines 9, no. 6: 591.
Lim, H. J., H. Yoon, H. Kim, et al. 2021. “Extracellular Vesicle Proteomes Shed Light on the Evolutionary, Interactive, and Functional Divergence of Their Biogenesis Mechanisms.” Frontiers in Cell and Developmental Biology 9: 734950.
Luck, K., D.-K. Kim, L. Lambourne, et al. 2020. “A Reference Map of the Human Binary Protein Interactome.” Nature 580, no. 7803: 402–408.
Machado, C. B., L. S. Da Cunha, J. H. Da. S. Maués, et al. 2022. “Role of miRNAs in Human T Cell Leukemia Virus Type 1 Induced T Cell Leukemia: A Literature Review and Bioinformatics Approach.” International Journal of Molecular Sciences 23, no. 10: 5486.
Manjunath, G. P., P. L. Ramanujam, and S. Galande. 2018. “Structure Function Relations in PDZ-Domain-Containing Proteins: Implications for Protein Networks in Cellular Signalling.” Journal of Biosciences 43, no. 1: 155–171.
Mao, K., P. Breen, and G. Ruvkun. 2020. “Mitochondrial Dysfunction Induces RNA Interference in C. elegans Through a Pathway Homologous to the Mammalian RIG-I Antiviral Response.” PLOS Biology 18, no. 12: e3000996.
Mao, K., P. Breen, and G. Ruvkun. 2022. “The Caenorhabditis elegans ARIP-4 DNA Helicase Couples Mitochondrial Surveillance to Immune, Detoxification, and Antiviral Pathways.” PNAS 119, no. 49: e2215966119.
Maseko, S. B., Y. Brammerloo, I. Van Molle, et al. 2023. “Identification of Small Molecule Antivirals Against HTLV-1 by Targeting the hDLG1-Tax-1 Protein-protein Interaction.” Antiviral Research 217: 105675.
Matsuoka, M., and K. T. Jeang. 2011. “Human T-Cell Leukemia Virus Type 1 (HTLV-1) and Leukemic Transformation: Viral Infectivity, Tax, HBZ and Therapy.” Oncogene 30, no. 12: 1379–1389.
Mazurov, D., G. Heidecker, and D. Derse. 2007. “The Inner Loop of Tetraspanins CD82 and CD81 Mediates Interactions With Human T Cell Lymphotrophic Virus Type 1 Gag Protein.” Journal of Biological Chemistry 282, no. 6: 3896–3903.
Millen, S., C. Gross, N. Donhauser, M. C. Mann, J. M. Péloponèse Jr., and A. K. Thoma-Kress. 2019. “Collagen IV (COL4A1, COL4A2), a Component of the Viral Biofilm, Is Induced by the HTLV-1 Oncoprotein Tax and Impacts Virus Transmission.” Frontiers in Microbiology 10: 2439.
Muller, M., P. Cassonnet, M. Favre, Y. Jacob, and C. Demeret. 2013. “A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions.” Journal of Visualized Experiments: JoVE no. 77: e50404.
Nardella, C., L. Visconti, F. Malagrinò, et al. 2021. “Targeting PDZ Domains as Potential Treatment for Viral Infections, Neurodegeneration and Cancer.” Biology Direct 16, no. 1: 15.
Nejmeddine, M., and C. R. M. Bangham. 2010. “The HTLV-1 Virological Synapse.” Viruses 2, no. 7: 1427–1447.
Nejmeddine, M., V. S. Negi, S. Mukherjee, et al. 2009. “HTLV-1-Tax and ICAM-1 Act on T-Cell Signal Pathways to Polarize the Microtubule-Organizing Center at the Virological Synapse.” Blood 114, no. 5: 1016–1025.
Neveu, G., P. Cassonnet, P.-O. Vidalain, et al. 2012. “Comparative Analysis of Virus-Host Interactomes With a Mammalian High-Throughput Protein Complementation Assay Based on Gaussia princeps Luciferase.” Methods (San Diego, Calif.) 58, no. 4: 349–359.
Nozuma, S., R. Kubota, and S. Jacobson. 2020. “Human T-Lymphotropic Virus Type 1 (HTLV-1) and Cellular Immune Response in HTLV-1-Associated Myelopathy/Tropical Spastic Paraparesis.” Journal of Neurovirology 26, no. 5: 652–663.
Parikh, J. R., B. Klinger, Y. Xia, J. A. Marto, and N. Blüthgen. 2010. “Discovering Causal Signaling Pathways Through Gene-expression Patterns.” Nucleic Acids Research 38, no. suppl_ 2: W109–W117.
Pérès, E., J. Blin, E. P. Ricci, et al. 2018. “PDZ Domain-Binding Motif of Tax Sustains T-Cell Proliferation in HTLV-1-Infected Humanized Mice.” PLOS Pathogens 14, no. 3: e1006933.
Pinto, D. O., C. Demarino, M. L. Pleet, et al. 2019. “HTLV-1 Extracellular Vesicles Promote Cell-to-Cell Contact.” Frontiers in Microbiology 10: 2147.
Pokhrel, N. K., A. R. Panfil, H. Habib, et al. 2024. “HTLV-1 Infected T Cells Cause Bone Loss via Small Extracellular Vesicles.” Journal of Extracellular Vesicles 13, no. 10: e12516.
Santoni, M.-J., R. Kashyap, L. Camoin, and J.-P. Borg. 2020. “The Scribble family in Cancer: Twentieth Anniversary.” Oncogene 39, no. 47: 7019–7033.
Seetharaman, A., H. Galagali, E. Linarte, et al. 2024. “Caenorhabditis elegans SynMuv B Gene Activity Is Down-Regulated During a Viral Infection to Enhance RNA Interference.” BioRxiv.
Seiki, M., J. Inoue, M. Hidaka, and M. Yoshida. 1988. “Two Cis-Acting Elements Responsible for Posttranscriptional Trans-Regulation of Gene Expression of Human T-Cell Leukemia Virus Type I.” PNAS 85, no. 19: 7124–7128.
Sieburg, M., A. Tripp, J.-W. Ma, and G. Feuer. 2004. “Human T-Cell Leukemia Virus Type 1 (HTLV-1) and HTLV-2 Tax Oncoproteins Modulate Cell Cycle Progression and Apoptosis.” Journal of Virology 78, no. 19: 10399–10409.
Simonis, N., J.-F. Rual, I. Lemmens, et al. 2012. “Host-Pathogen Interactome Mapping for HTLV-1 and -2 Retroviruses.” Retrovirology 9, no. 1: 26.
Sommerova, L., M. Anton, P. Bouchalova, et al. 2019. “The Role of miR-409-3p in Regulation of HPV16/18-E6 mRNA in Human Cervical High-Grade Squamous Intraepithelial Lesions.” Antiviral Research 163: 185–192.
Teng, M., Z. J. Xia, N. Lo, K. Daud, and H. H. He. 2021. “Assembling the RNA Therapeutics Toolbox.” Medicinal Reviews 4, no. 2: 110–128.
Théry, C., K. W. Witwer, E. Aikawa, et al. 2018. “Minimal Information for Studies of Extracellular Vesicles 2018 (MISEV2018): A Position Statement of the International Society for Extracellular Vesicles and Update of the MISEV2014 Guidelines.” Journal of Extracellular Vesicles 7, no. 1: 1535750.
Tyanova, S., T. Temu, P. Sinitcyn, et al. 2016. “The Perseus Computational Platform for Comprehensive Analysis of (prote) Omics Data.” Nature Methods 13, no. 9: 731–740.
Van Criekinge, W., and R. Beyaert. 1999. “Yeast Two-Hybrid: State of the Art.” Biological Procedures Online 2: 1–38.
Vandermeulen, C., T. O'Grady, J. Wayet, et al. 2021. “The HTLV-1 Viral Oncoproteins Tax and HBZ Reprogram the Cellular mRNA Splicing Landscape.” Plos Pathogens 17, no. 9: e1009919.
Van Niel, G., G. d'Angelo, and G. Raposo. 2018. “Shedding Light on the Cell Biology of Extracellular Vesicles.” Nature Reviews Molecular Cell Biology 19, no. 4: 213–228.
Volkov, A. N., and N. A. van Nuland. 2013. “Solution NMR Study of the Yeast Cytochrome c Peroxidase: Cytochrome c Interaction.” Journal of Biomolecular NMR 56, no. 3: 255–263.
Vranken, W. F., W. Boucher, T. J. Stevens, et al. 2005. “The CCPN Data Model for NMR Spectroscopy: Development of a Software Pipeline.” Proteins 59, no. 4: 687–696.
2024. “What Will It Take to Get miRNA Therapies to Market?.” Nature Biotechnology 42, no. 11: 1623–1624.
Xie, L., B. Yamamoto, A. Haoudi, O. J. Semmes, and P. L. Green. 2006. “PDZ Binding Motif of HTLV-1 Tax Promotes Virus-Mediated T-Cell Proliferation In Vitro and Persistence In Vivo.” Blood 107, no. 5: 1980–1988.
Zhang, Y., Y. Liu, H. Liu, and W. H. Tang. 2019. “Exosomes: Biogenesis, Biologic Function and Clinical Potential.” Cell & Bioscience 9, no. 1: 19.
Zhao, L. J., and C. Z. Giam. 1991. “Interaction of the Human T-Cell Lymphotrophic Virus Type I (HTLV-I) Transcriptional Activator Tax With Cellular Factors That Bind Specifically to the 21-Base-Pair Repeats in the HTLV-I Enhancer.” PNAS 88, no. 24: 11445–11449.