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• Aldrigui, L.G., Nogueira-Filho, S.L., Altino, V.S., Mendes, A., Clauss, M. and Nogueira, S.S.C. (2018a) Direct and indirect caecotrophy behaviour in paca (Cuniculus paca). J Anim Physiol Anim Nutr 102, 1774–1782.
• Aldrigui, L.G., Nogueira-Filho, S.L.G., Mendes, A., Altino, V.S., Ortmann, S., da Cunha Nogueira, S.S.C. and Clauss, M. (2018b) Effect of different feeding regimes on cecotrophy behavior and retention of solute and particle markers in the digestive tract of paca (Cuniculus paca). Comp Biochem Phys A 226, 57–65.
• Allen, M.S. (1997) Relationship between fermentation acid production in the rumen and the requirement for physically effective fiber. J Dairy Sci 80, 1447–1462.
• Altmann, J. (1974) Observational study of behavior: sampling methods. Behaviour 49, 227–266.
• Andrade, P.C.M., Altino, V.S., Tuma, N.N., Martins, K.P.M. and da Costa, E.S. (2020) Use of regional by-products in diets of captive collared peccary (Pecari tajacu) in the central Amazon. Ragros 12, 112–134.
• Beck, M.R. and Gregorini, P. (2020) How dietary diversity enhances hedonic and eudaimonic well-being in grazing ruminants. Front Vet Sci 7, 191.
• Bekele, A., Koike, S. and Kobayashi, Y. (2010) Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis. FEMS Microbiol Lett 305, 49–57.
• Borges, R.M., Mendes, A., Nogueira, S.S.C., Bindelle, J. and Nogueira-Filho, S.L.G. (2017) Protein requirements of collared peccary (Pecari tajacu). Trop Anim Health Prod 49, 1353–1359.
• Borges, R.M., Nogueira-Filho, S.L.G., Cairo, P.L.G., Nogueira, S.S.C., Mendes, A., Aldrigui, L.G., Vandenheede, M. and Bindelle, J. (2020) Individual differences in behavior affect total tract fiber digestibility: the example of collared peccary. Animal 29, 2570–2579.
• Bruno, K.A., Vanzant, E.S., Vanzant, K.A. and McLeod, K.R. (2016) Relationships of a novel objective chute score and exit velocity with growth performance of receiving cattle. J Anim Sci 94, 4819–4831.
• Byers, J.A. and Bekoff, M. (1981) Social, spacing and cooperative behavior of the collared peccary, Tayassu tajacu. J Mamm 62, 767–785.
• Carl, G.R. and Brown, R.D. (1983) Protozoa in the forestomach of the collared peccary. J Mamm 64, 709.
• Chao, A. (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11, 265–270.
• Comizzoli, P., Peiniau, J., Dutertre, C. and Planquette, P. (1997) Digestive utilization of concentrated and fibrous diets by two peccary species (Tayassu pecari, Tayassu tajacu) raised in French Guyana. Anim Feed Sci Tech 64, 215–226.
• Cong, O.N., Taminiau, B., Kim, D.P., Daube, G., Van, G.N., Bindelle, J. and Hornick, J.L. (2020) Effect of increasing levels of rice distillers’ by-product on growth performance, nutrient digestibility, blood profile and colonic microbiota of weaned piglets. Asian Austral J Anim 33, 788.
• Cooper, R. and Wemelsfelder, F. (2020) Qualitative behaviour assessment as an indicator of animal emotional welfare in farm assurance. Livestock 25, 180–183.
• Cryan, J.F. and Dinan, T.G. (2012) Mind-altering microorganisms: the impact of the gut microbiota on brain and behavior. Nat Rev Neurosci 13, 701–712.
• De Faria, V.P. and Huber, J.T. (1984) Effect of dietary protein and energy levels on rumen fermentation in Holstein steers. J Anim Sci 58, 452–459.
• Dehority, B.A. (2002) Gastrointestinal tracts of herbivores, particularly the ruminant: anatomy, physiology and microbial digestion of plants. J Appl Anim Res 21, 145–160.
• Duffy, E.M., Tietze, S.M., Knoell, A.L., Aluthge, N.D., Fernando, S.C., Schmidt, T.S., Yates, D.T. and Petersen, J.L. (2018) Rumen bacterial composition in lambs is affected by β-adrenergic agonist supplementation and heat stress at the phylum level. Transl Anim Sci 2, S145–S148.
• Edgar, R.C., Haas, B.J., Clemente, J.C., Quince, C. and Knight, R. (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194–2200.
• Fastrès, A., Taminiau, B., Vangrinsven, E., Tutunaru, A.C., Moyse, E., Farnir, F., Daube, G. and Clercx, C. (2019) Effect of an antimicrobial drug on lung microbiota in healthy dogs. Heliyon 5, e02802.
• Feaver, J., Mendl, M. and Batesonm, P. (1986) A method for rating the individual distinctiveness of domestic cats. Anim Behav 34, 1016–1025.
• Fernando, S.C., Purvis, H.T., Najar, F.Z., Wiley, G., Macmil, S., Sukharnikov, L.O., Nagaraja, T.G., Krehbiel, C.R. et al. (2007) Meta-functional genomics of the rumen biome. J Dairy Sci 90, 569.
• Fernando, S.C., Purvis, H.T. II, Najar, F.Z., Sukharnikov, L.O., Krehbiel, C.R., Nagaraja, T.G., Roe, B.A. and de Silva, U. (2010) Rumen microbial population dynamics during adaptation to a high-grain diet. Appl Environ Microbiol 76, 7482–7490.
• Finkemeier, M.A., Langbein, J. and Puppe, B. (2018) Personality research in mammalian farm animals: concepts, measures, and relationship to welfare. Front Vet Sci 5, 131.
• Goad, D.W., Goad, C.L. and Nagaraja, T.G. (1998) Ruminal microbial and fermentative changes associated with experimentally induced subacute acidosis in steers. J Anim Sci 76, 234–241.
• Hänninen, L. and Pastell, M. (2009) CowLog open-source software for coding behaviors from. Behav Res Methods 41, 472–476.
• Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Collaborators, G.R.C. and Jansen, P.H. (2015) Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Nat Sci Reports 5, 14567.
• Hernandez-Sanabria, E., Guan, L.L., Goonewardene, L.A., Li, M., Mujibi, D.F., Stothard, P., Moore, S.S. and Leon-Quintero, M.C. (2010) Correlation of particular bacterial PCR-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits. Appl Environ Microbiol 76, 6338–6350.
• Hoover, W.H. (1986) Chemical factors involved in ruminal fiber digestion. J Dairy Sci 69, 2755–2766.
• Jami, E. and Mizrahi, I. (2012) Composition and similarity of bovine rumen microbiota across individual animals. PLoS One 7, e33306.
• Jones, K.R., Lall, K.R. and Garcia, G.W. (2019) Endoparasites of selected native non-domesticated mammals in the neotropics (New World Tropics). Vet Sci 6, 87.
• Kiltie, R.A. (1981) Stomach contents of rain-forest peccaries (Tayassu tajacu and Tayassu pecari). Biotropica 13, 234–236.
• Kim, B.R., Shin, J., Guevarra, R.B., Lee, J.H., Kim, D.W., Seol, K.H., Lee, J.H., Kim, H.B. et al. (2017) Deciphering diversity indices for a better understanding of microbial communities. J Microbiol Biotechnol 27, 2089–2093.
• Koolhaas, J.M., De Boer, S.F., Coppens, C.M. and Buwalda, B. (2010) Neuroendocrinology of coping styles: towards understanding the biology of individual variation. Front Neuroendocrinol 31, 307–321.
• Kraimi, N., Dawkins, M., Gebhardt-Henrich, S.G., Velge, P., Rychlik, I., Volf, J., Creach, P., Smith, A. et al. (2019) Influence of the microbiota-gut-brain axis on behavior and welfare in farm animals: a review. Physiol Behav 210, 112658.
• Langer, P. (1978) Anatomy of the stomach of the collared peccary, Dicotyles tajacu (L., 1758) (Artiodactyla: Mammalia). Z Saugetierkd 43, 42–59.
• Langer, P. (1979) Adaptational significance of the forestomach of the collared peccary, Dicotyles tajacu (L. 1758) (Mammalia: Artiodactyla). Mammalia 43, 235–245.
• Lee, B.-H., Nejad, J.G., Kim, B.-W., Ohh, S.-J. and Sung, K. (2016) Fatty acid profile of meat, diurnal changes in volatile fatty acids, rumen fluid parameters, and growth performance in Korean native (Hanwoo) steers fed high- and low-forage diets supplemented with chromium-methionine. R Bras Zootec 45, 483–488.
• Li, Z.P., Liu, H.L., Li, G.Y., Bao, K., Wang, K.Y., Xu, C., Yang, Y.F., Yang, F.H. et al. (2013) Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China. BMC Microbiol 13, 151.
• Llonch, P., Somarriba, M., Duthie, C.A., Haskell, M.J., Rooke, J.A., Troy, S., Roehe, R. and Turner, S.P. (2016) Association of temperament and acute stress responsiveness with productivity, feed efficiency, and methane emissions in beef cattle: an observational study. Front Vet Sci 3, 43.
• Lochmiller, R.L., Hellgren, E.C., Galagher, J.F., Varner, L.W. and Grant, W.E. (1989) Volatile fatty acids in the gastrointestinal tract of the collared peccary (Tayassu tajacu). J Mamm 70, 189–191.
• Makki, K., Deehan, E.C., Walter, J. and Bäckhed, F. (2018) The impact of dietary fiber on gut microbiota in host health and disease. Cell Host Microbe 23, 705–715.
• Mendes, A., Nogueira, S.S.C., Lavorenti, A. and Nogueira-Filho, S.L.G. (2000) A note on the cecotrophy behavior in capybara (Hydrochaeris hydrochaeris). Appl Animal Behav Sci 66, 161–167.
• Metcalf, J.L., Song, S.J., Morton, J.T., Weiss, S., Seguin-Orlando, A., Joly, F., Feh, C., Taberlet, P. et al. (2017) Evaluating the impact of domestication and captivity on the horse gut microbiome. Sci Rep 7, 1–9.
• Metzler-Zebeli, B.U., Schmitz-Esser, S., Klevenhusen, F., Podstatzky-Lichtenstein, L., Wagner, M. and Zebeli, Q. (2013) Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats. Anaerobe 20, 65–73.
• Moula, N., Hornick, J.L., Cabaraux, J.F., Korsak, N., Daube, G., Dawans, E., Antoine, N., Taminiau, B. et al. (2018) Effects of dietary black soldier fly larvae on performance of broilers mediated or not through changes in microbiota. J Insects Food Feed 4, 31–42.
• Neave, H.W., Weary, D.M. and Von Keyserlingk, M.A.G. (2018) Individual variability in feeding behaviour of domesticated ruminants. Animal 12, s419–s430.
• Niu, Q., Li, P., Hao, S., Zhang, Y., Kim, S.W., Li, H., Ma, X., Gao, S. et al. (2015) Dynamic distribution of the gut microbiota and the relationship with apparent crude fiber digestibility and growth stages in pigs. Sci Rep 5, 9938.
• Nogueira, S.S.C., Macêdo, J.F., Sant’Anna, A.C., Nogueira-Filho, S.L.G. and Paranhos da Costa, M.J.R. (2015) Assessment of temperament traits of white-lipped (Tayassu pecari) and collared peccaries (Pecari tajacu) during handling in a farmed environment. Anim Welfare 24, 291–298.
• Nogueira, S.S.C. and Nogueira-Filho, S.L.G. (2011) Wildlife farming: an alternative to unsustainable hunting and deforestation in Neotropical forests? Biodivers Conserv 20, 1385–1397.
• Nogueira, S.S.C., Nogueira-Filho, S.L.G., Duarte, J. and Mendl, M. (2021) Temperament, plasticity, and emotions in defensive behaviour of paca (Mammalia, Hystricognatha). Animals 11, 293.
• Nogueira, S.S.C., Silva, M.G., Dias, C.T.S., Pompéia, S., Cetra, M. and Nogueira-Filho, S.L.G. (2010) Social behaviour of collared peccaries (Pecari tajacu) under three space allowances. Anim Welfare 19, 243–248.
• Nogueira-Filho, S.L.G. (2005) The effects of increasing levels of roughage on coefficients of nutrient digestibility in the collared peccary (Tayassu tajacu). Anim Feed Sci Tech 120, 151–157.
• Nogueira-Filho, S.L.G., Martins, K., Borges, R.M., Mendes, A., Nogueira, S.S.C. and Bindelle, J. (2018) Intake and digestion of non-traditional feedstuffs by farmed collared peccary (Mammalia, Tayassuidae). Rev Bras Zootec 47, e20170288.
• Nogueira-Filho, S.L.G., Mendes, A., Tavares, E.F.K. and Nogueira, S.S.C. (2013) Cecotrophy behavior and use of urea as non-protein nitrogen (NPN) source for capybara (Hydrochoerus hydrochaeris). Trop Anim Health Prod 45, 1703–1708.
• Oliveira, E.G., Santos, A.C.F., Dias, J.C.T., Rezende, R.P., Nogueira-Filho, S.L.G. and Gross, E. (2009) The influence of urea feeding on the bacterial and archaeal community in the forestomach of collared peccary (Artiodactyla, Tayassuidae). J Appl Microbiol 107, 1711–1718.
• Paz, H.A., Anderson, C.L., Muller, M.J., Kononoff, P.J. and Fernando, S.C. (2016) Rumen bacterial community composition in Holstein and Jersey cows is different under same dietary condition and is not affected by sampling method. Front Microbiol 7, 1206.
• Petri, R.M., Schwaiger, T., Penner, G.B., Beauchemin, K.A., Forster, R.J., McKinnon, J.J. and McAllister, T.A. (2013) Characterization of the core rumen microbiome in cattle during transition from forage to concentrate as well as during and after an acidotic challenge. PLoS One 8, e83424.
• Rauw, W.M., Johnson, A.K., Gomez-Raya, L. and Dekkers, J. (2017) A hypothesis and review of the relationship between selection for improved production efficiency, coping behavior, and domestication. Front Genet 8, 134.
• Ravagnolo, O., Misztal, I. and Hoogenboom, G. (2000) Genetic component of heat stress in dairy cattle, development of heat index function. J Dairy Sci 1, 2120–2125.
• Ravagnolo, O. and Misztal, I. (2002) Effect of heat stress on nonreturn rate in Holsteins: fixed-model analyses. J Dairy Sci 85, 3101–3106.
• Rey, M., Enjalbert, F., Combes, S., Cauquil, L., Bouchez, O. and Monteils, V. (2014) Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential. J Appl Microbiol 116, 245–257.
• Schären, M., Frahm, J., Kersten, S., Meyer, U., Hummel, J., Breves, G. and Dänicke, S. (2018) Interrelations between the rumen microbiota and production, behavioral, rumen fermentation, metabolic, and immunological attributes of dairy cows. J Dairy Sci 101, 4615–4637.
• Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., Lesniewski, R.A., Oakley, B.B. et al. (2009) Introducing mothur: open-source, platform-independent, community supported software for describing and comparing microbial communities. Appl Environ Microbiol 75, 7537–7541.
• Shabat, S.K.B., Sasson, G., Doron-Faigenboim, A., Durman, T., Yaacoby, S., Miller, M.E.B., White, B.A., Shterzer, N. et al. (2016) Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants. ISME J 10, 2958.
• Sowls, L.K. (1997) Javelinas and Other Peccaries: Their Biology, Management and Use, 2nd edn, p 325. Texas: Texas A&M University Press.
• Stevens, C. and Hume, I. (2004) Comparative Physiology of the Vertebrate Digestive System, 2nd edn, p 400. Cambridge: Cambridge University Press.
• Stevenson, D.M. and Weimer, P.J. (2007) Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Appl Microbiol Biotechnol 75, 165–174.
• Sung, K.I., Ghassemi Nejad, J., Hong, S.M., Ohh, S.J., Lee, B.H., Peng, J.L., Ji, D.H. and Kim, B.W. (2015) Effects of forage level and chromium-methionine chelate supplementation on performance, carcass characteristics and blood metabolites in Korean native (Hanwoo) steers. J Anim Sci Tech 57, 14–20.
• Ushida, K., Tsuchida, S., Ogura, Y., Toyoda, A. and Maruyama, F. (2016) Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae. Anim Sci J 87, 835–841.
• Vazire, S., Gosling, S.D., Dickey, A.S. and Schapiro, S.J. (2007) Measuring personality in nonhuman animals. In Handbook of Research Methods in Personality Psychology ed. Robins, R.W., Fraley, R.C. and Krueger, R.F. pp. 190–206. New York London: The Guilford Press.
• Wemelsfelder, F., Hunter, E.A., Mendl, M.T. and Lawrence, A.B. (2000) The spontaneous qualitative assessment of behavioural expressions in pigs: first explorations of a novel methodology for integrative animal welfare measurement. Appl Anim Behav Sci 67, 193–215.
• Xue, D., Chen, H., Chen, F., He, Y., Zhao, C., Zhu, D., Zeng, L. and Li, W. (2016) Analysis of the rumen bacteria and methanogenic archaea of yak (Bos grunniens) steers grazing on the Qinghai-Tibetan Plateau. Livest Sci 188, 61–71.
• Zumbach, B., Misztal, I., Tsuruta, S., Sanchez, J.P., Azain, M., Herring, W., Holl, J., Long, T. et al. (2008) Genetic components of heat stress in finishing pigs: development of a heat load function. J Anim Sci 86, 2082–2088.