A hybrid human-computer approach for large-scale image-based measurements using web services and machine learning

Marée, Raphaël; Rollus, Loïc; Stevens, Benjamin; Louppe, Gilles; Caubo, Olivier; Rocks, Natacha; Bekaert, Sandrine; Cataldo, Didier; Wehenkel, Louis

doi:10.1109/isbi.2014.6868017

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A hybrid human-computer approach for large-scale image-based measurements using web services and machine learning

Marée, Raphaël; Rollus, Loïc; Stevens, Benjamin et al.

2014 • In Proceedings IEEE International Symposium on Biomedical Imaging

Peer reviewed

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https://hdl.handle.net/2268/162084

DOI
10.1109/isbi.2014.6868017

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Keywords :

imaging informatics; machine learning

Abstract :

[en] We present a novel methodology combining web-based software development practices, machine learning, and spatial databases for computer-aided quantification of regions of interest (ROIs) in large-scale imaging data. We describe our main methodological choices, and then illustrate the benefits of the approach (workload reduction, improved precision, scalability, and traceability) on hundreds of whole-slide images of biological tissue slices in cancer research.

Research Center/Unit :

Giga-Systems Biology and Chemical Biology - ULiège
Institut Montefiore

Disciplines :

Computer science

Author, co-author :

Marée, Raphaël ; Université de Liège - ULiège > GIGA-Management : Plateforme bioinformatique

Rollus, Loïc ; Université de Liège - ULiège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Systèmes et modélisation

Stevens, Benjamin ; Université de Liège - ULiège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Systèmes et modélisation

Louppe, Gilles ; Université de Liège - ULiège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Systèmes et modélisation

Caubo, Olivier

Rocks, Natacha ; Université de Liège - ULiège > Département des sciences biomédicales et précliniques > Biochimie et physiologie générales, humaines et path.

Bekaert, Sandrine ; Université de Liège - ULiège > Département des sciences biomédicales et précliniques > Biochimie et physiologie générales, humaines et path.

Cataldo, Didier ; Université de Liège - ULiège > Département des sciences biomédicales et précliniques > Biochimie et physiologie générales, humaines et path.

Wehenkel, Louis ; Université de Liège - ULiège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Systèmes et modélisation

Language :

English

Title :

A hybrid human-computer approach for large-scale image-based measurements using web services and machine learning

Publication date :

May 2014

Event name :

11th IEEE International Symposium on Biomedical Imaging

Event date :

du 29 avril 2014 au 2 mai 2014

Audience :

International

Main work title :

Proceedings IEEE International Symposium on Biomedical Imaging

Publisher :

IEEE

Peer reviewed :

Peer reviewed

Name of the research project :

CYTOMINE

Funders :

FEDER - Fonds Européen de Développement Régional
Service public de Wallonie : Direction générale opérationnelle de l'économie, de l'emploi et de la recherche - DG06

Available on ORBi :

since 26 January 2014

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Bibliography

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R. Marée, B. Stevens, L. Rollus, N. Rocks, X. MolesLopez, I. Salmon, D. Cataldo, and L. Wehenkel, "A rich internet application for remote visualization and collaborative annotation of digital slide images in histology and cytology," BMC Diagnostic Pathology, Vol. 8 S1, 2013.
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