Hyperspectral imaging NIR; Toxic species; Discriminant analyses; Distinct grassland species
Abstract :
[en] The objective of this study was to discriminate by a NIR line scan hyperspectral imaging, taxonomic plant families comprised of different grassland species. Plants were collected from semi-natural meadows of the National Apuseni Park, Apuseni Mountains, Gârda area (Romania) according to botanical families. Chemometric tools such as PLS-DA were used to discriminate distinct grassland species, and assign the different species to botanical families. Species within the Poacea family and Other Botanical Families could be distinguished (R2=0.91 and 0.90, respectively) with greater accuracy than those species in the Fabacea family (R2=0.60). A correct classification rate of 99% was obtained in the assignment of the various species to the proper family. Moreover a complete study based on wavelength selection has been performed in order to identify the chemical compound related to each botanical family and therefore to the possible toxicity of the plant. This work could be considered as a first step for the development of a complete procedure for the detection and quantification of possible toxic species in semi-natural meadows used by grazing animals.
Disciplines :
Life sciences: Multidisciplinary, general & others
Author, co-author :
Dale, Laura ; Université de Liège - ULiège > Doct. sc. agro. & ingé. biol.
Thewis, André ; Université de Liège - ULiège > Sciences agronomiques > Zootechnie
G. Nice Guide to Toxic Plants in Forages 2008 West Lafayette, Ind., Purdue University Cooperative Extension Service, WS (Purdue University. Cooperative Extension Service) 37
D. MierliÆǎ Nutriţia şi alimentaţia animalelor 2008 Editura Universitǎţii din Oradea Oradea 420
R.C. Kline, S. Porr, and J. Cardina Horse Nutrition 2000 Ohio State University Extension OH 91
D. Pleşa, G. Mihai, N. Sima, D. Pavel, M. Mihai, and M. Sabo Bull. UASVM Agric. 68 1 2011 425
M.R. Anadón, and V. Martínez-Larrañaga Castellano, Poisonous Plants of Europe R. Gupta, Veterinary Toxicology second ed. 2012 Academic Press Boston 1080 1094
J. Bruneton Pharmacognosie. Phytochimie. Plant Medicinales fourth ed. 2009 Tec&Doc Paris 259 1215
T. Aniszewski Alkaloids-secrets of Life: Alkaloid Chemistry, Biological Significance, Applications and Ecological Role 2007 Elsevier Amsterdam 1 59
M. Naczk, and F. Shahidi J. Chromatogr. A. 1054 2004 95 111
I. Ignat, and V.I. Volf Food Chem. 126 2011 1821 1835
P. Urbas, Effects of Forest Fragmentation on Bottom-up Control in Leaf-cuttings Ants, Dissertation, Technische Universität Kaiserslautern, 2004, 27-45.
J.C. Kim, B.H. Kang, C.C. Shin, Y.B. Kim, H.S. Lee, C.Y. Kim, J. Han, K.S. Kim, D.W. Chung, and M.K. Chung Food Chem. Toxicol. 40 2002 1569 1580
E.J. Parish, S. Li, and A.D. Bell Chemistry of waxes and sterols C.C. Akoh, D.B. Min, Food Lipids: Chemistry, Nutrition and Biotechnology third ed. 2008 CRC Press Boca Raton 99 121
J.A. Fernández Pierna, P. Vermeulen, O. Amand, A. Tossens, P. Dardenne, V. Baeten, and NIR Hyperspectral Chemometr. Intell. Lab. Syst. 117 2012 233 239
P. Vermeulen, J.A. Fernández Pierna, H.P. van Egmond, P. Dardenne, and V. Baeten Food Addit. Contam. 29 2 2012 232 240
L.M. Dale, A. Théwis, C. Boudry, I. Rotar, P. Dardenne, V. Baeten, and J.A. Fernández Pierna Appl. Spectrosc. Rev. 48 2 2013 142 159
Y. Suzuki, K. Tanaka, W. Kato, H. Okamoto, T. Kataoka, H. Shimada, T. Sugiura, and E. Shima J. Jpn. Grassl. Sci. 54 4 2008 179 188
H. Okamoto, T. Murata, T. Kataoka, and S.I. Hata Weed Biol. Manag. 7 1 2007 31 37
Y. Suzuki, H. Okamoto, M. Takahashi, T. Kataoka, and Y. Shibata J. Jpn. Grassl. Sci. 58 1 2012 1 7
G.E. Burrows, and R.J. Tyrl Toxic plants of North America 2001 Iowa State University Press Ames, IA, USA 1342
L.M. Dale, A. Bogdan, F. Pǎcurar, J.A. Fernández Pierna, N. Kayoka Mukendi, I. Rotar, A. Thewis, V. Baeten, Discrimination of pure species of grassland species using hyperspectral imaging NIR, Short communication in grassland - a European resource? Book of Abstracts, in: 24th EGF 2012 General Meeting, Lublin, 2012, p. 15.
B.M. Wise, J.M. Shaver, N.B. Gallagher, W. Windig, R. Bro, and R.S. Koch PLS-Toolbox Version 4.0 for use with MatlabTM 2006 Eigenvector Research Inc. Wenatchee, WA, USA 420
A.C. Silva, L.F.B.Lira Pontes, M.F. Pimentel, and M.J.C. Pontes Talanta 93 2012 129 134
C.M. McGoverin, P. Engelbrecht, P. Geladi, and M. Manley Anal. Bioanal. Chem. 401 2011 2283 2289
D. Wang, Z. Ma, H He, L. Pan, S. Min, and J. Wang Sens. Lett. 10 1-2 2012 162 167
B.G. Osborne, and T. Fearn Near Infrared Spectroscopy in Food Analysis 1986 Longman Scienfific and Technical Halow, Essex, England 20 42
G. Sinnaeve, P. Dardenne, R. Biston, Processing of agricultural products, in: A.F.B. van der Poel, J. Huisman, H.S. Saini (Eds.), Proceedings of the Second International Workshop on Antinutritional Factors in Legume Seeds, Wageningen, The Netherlands, 1993, p. 101.
H. Schulz, and M. Baranska Vib. Spectrosc. 43 2007 13 25
W. Li, and H. Qu J. Pharm. Biomed. Anal. 55 4 2010 425 431
L. Bokobza Origin of near-infrared absorption bands H.W. Siesler, Y. Ozaki, S. Kawata, H.M. Heise, Near-Infrared Spectroscopy: Principles, Instruments, Applications 2007 Wiley-VCH Verlag GmbH Weinheim, Germany 11 41
R. Ferrer Gallego, J.M. Hernández-Hierro, J.C. Rivas-Gonzalo, and M.T. Escribano-Bailón LWT-Food Sci. Technol. 44 2011 847 853
R. Croteau, T.M. Kutchan, and N.G. Lewis Natural products (secondary metabolites) B. Buchanan, W. Gruissem, R. Jones, Biochemistry and Molecular Biology of Plants 2000 American Society of Plant Physiologists Rockville, MD 1250 1318
Crozier, Y. Kamiya, G. Bishop, and T. Yokota Biosintesis of hormones and elicitor molecules B. Buchanan, W. Gruissem, R. Jones, Biochemistry and Molecular Biology of Plants 2000 American Society of Plant Physiologists Rockville, MD 850 929
R. Malkin, and K. Niyogi Photosynthesis B. Buchanan, W. Gruissem, R. Jones, Biochemistry and Molecular Biology of Plants 2000 American Society of Plant Physiologists Rockville, MD 568 628
P. Kamnaing Tsopmo Phytochem. Lett. 4 3 2011 218 221