[en] Oxygenic photosynthesis, which converts solar energy into carbohydrates via a linear electron transport chain and two photosystems (PSII and PSI), first appeared in cyanobacteria approximately 3.3 Ga and drove the Great Oxidation Event around 2.4 Ga. During this period, euxinic conditions-characterized by sulfidic, anoxic oceans-posed a metabolic challenge to cyanobacteria, as sulfide inhibits PSII, the reaction center responsible for water splitting. Here, we report the presence of a sulfide-quinone reductase (SQR) enzyme in Antarctic representatives of Gloeobacterales, the earliest-branching cyanobacterial lineage. Phylogenetic analyses consistently position these SQR sequences at the base of the cyanobacterial clade, likely predating the multiple lateral transfers reported for this gene in the phylum. Additional searches in metagenomic data sets indicate that such sequences are restricted to cold environments. Our findings unveil possible adaptive strategies of early cyanobacteria to cope with sulfidic stress and point to Antarctic lakes as preserved natural laboratories for investigating cyanobacterial diversification and the evolution of oxygenic photosynthesis under euxinic conditions.IMPORTANCEThe diversification of cyanobacteria during and after the Great Oxidation Event occurred in early Proterozoic oceans that were partially euxinic (anoxic and sulfidic), a condition generally considered incompatible with oxygenic photosynthesis due to photosystem II inhibition. The presence of a sulfide quinone reductase in an early diverging cyanobacterium lacking thylakoids, isolated from Antarctica, suggests that oxygenic and anoxygenic photosynthesis coexisted early on in cyanobacterial evolution. The occurrence of these organisms in Antarctic lakes under euxinic conditions offers a natural laboratory for studying the physiology and adaptation of the first oxygenic photosynthetic organisms.
Research Center/Unit :
InBios - Integrative Biological Sciences - ULiège
Disciplines :
Microbiology
Author, co-author :
Hambücken, Louise ; Université de Liège - ULiège > Integrative Biological Sciences (InBioS)
Sudianto, Edi ; Université de Liège - ULiège > Integrative Biological Sciences (InBioS)
Verleyen, Elie; Protistology and Aquatic Ecology, Ghent University, Ghent, Belgium
Saw, Jimmy H; Department of Biological Sciences, The George Washington University, Washington, DC, USA
Baurain, Denis ; Université de Liège - ULiège > Département des sciences de la vie > Phylogénomique des eucaryotes
Cornet, Luc ; Université de Liège - ULiège > Département des sciences de la vie > Phylogénomique des eucaryotes
Language :
English
Title :
An early diverging SQR enzyme in Antarctic Gloeobacterales indicates sulfide tolerance in thylakoid-lacking cyanobacteria.
Publication date :
13 May 2026
Journal title :
Microbiology Spectrum
eISSN :
2165-0497
Publisher :
American Society for Microbiology, United States
Pages :
e0042326
Peer reviewed :
Peer Reviewed verified by ORBi
Tags :
CÉCI : Consortium des Équipements de Calcul Intensif
PDR T.0018.24 OR-OX-PHOT-IN-CYN; FRIA; Grant no. 2.5020.11
Funding text :
This work was supported by a research grant (PDR T.0018.24 OR-OX-PHOT-IN-CYN) from the Belgian National Fund for Scientific Research (Fonds de la Recherche Scientifique [F.R.S.-FNRS]) to D.B. L.C. is supported by a mandate from the Belgian National Fund for Scientific Research (F.R.S.-FNRS). L.H. is a FRIA grantee of the Fonds de la Recherche Scientifique – F.R.S.-FNRS. Computational resources were provided by the Consortium des Équipements de Calcul Intensif, funded by the F.R.S.-FNRS under grant no. 2.5020.11 and by the Walloon Region.
Supplemental materials and methods and additional phylogenetic trees are provided as supplemental material accompanying this article. All data generated and analyzed in this study have been deposited in Figshare and are accessible via this link: https://doi.org/10.6084/m9.figshare.31333204. The repository includes the complete data set, alignment files, phylogenetic trees (Newick format), and associated analysis files.
1. Boden JS, Konhauser KO, Robbins LJ, Sánchez-Baracaldo P. 2021. Timing the evolution of antioxidant enzymes in cyanobacteria. Nat Commun 12:4742. https://doi.org/10.1038/s41467-021-24396-y
2. Bekker A, Holland HD, Wang P-L, Rumble D, Stein HJ, Hannah JL, Coetzee LL, Beukes NJ. 2004. Dating the rise of atmospheric oxygen. Nature 427: 117–120. https://doi.org/10.1038/nature02260
3. Melezhik VA, Fallick AE, Rychanchik DV, Kuznetsov AB. 2005. Palaeoproterozoic evaporites in Fennoscandia: implications for seawater sulphate, the rise of atmospheric oxygen and local amplification of the δ 13 C excursion. Terra Nova 17: 141–148. https://doi.org/10.1111/j.1365-3121.2005.00600.x
4. Meyer KM, Kump LR. 2008. Oceanic euxinia in earth history: causes and consequences. Annu Rev Earth Planet Sci 36: 251–288. https://doi.org/10.1146/annurev.earth.36.031207.124256
5. Canfield DE. 1998. A new model for Proterozoic ocean chemistry. Nature 396: 450–453. https://doi.org/10.1038/24839
6. Johnston DT, Poulton SW, Fralick PW, Wing BA, Canfield DE, Farquhar J. 2006. Evolution of the oceanic sulfur cycle at the end of the paleoproterozoic. Geochim Cosmochim Acta 70: 5723–5739. https://doi.org/10.1016/j.gca.2006.08.001
7. Johnston DT, Wolfe-Simon F, Pearson A, Knoll AH. 2009. Anoxygenic photosynthesis modulated proterozoic oxygen and sustained Earth’s middle age. Proc Natl Acad Sci USA 106: 16925–16929. https://doi.org/10.1073/pnas.0909248106
8. Miller SR, Bebout BM. 2004. Variation in sulfide tolerance of photosystem II in phylogenetically diverse cyanobacteria from sulfidic habitats. Appl Environ Microbiol 70: 736–744. https://doi.org/10.1128/AEM.70.2.736-744.2004
9. Cohen Y, Jørgensen BB, Revsbech NP, Poplawski R. 1986. Adaptation to hydrogen sulfide of oxygenic and anoxygenic photosynthesis among cyanobacteria. Appl Environ Microbiol 51: 398–407. https://doi.org/10.1128/aem.51.2.398-407.1986
10. Rexroth S, Mullineaux CW, Ellinger D, Sendtko E, Rögner M, Koenig F. 2011. The plasma membrane of the cyanobacterium Gloeobacter violaceus contains segregated bioenergetic domains. Plant Cell 23: 2379–2390. https://doi.org/10.1105/tpc.111.085779
11. Cornet L. 2025. On the non-oxygenic origins of thylakoids. Commun Biol 8:1697. https://doi.org/10.1038/s42003-025-09100-w
12. Grettenberger CL. 2021. Novel Gloeobacterales spp. from diverse environments across the globe. mSphere 6:e00061-21. https://doi.org/10.1128/mSphere.00061-21
13. Nishihara A, Tsukatani Y, Azai C, Nobu MK. 2024. Illuminating the coevolution of photosynthesis and Bacteria. Proc Natl Acad Sci USA 121. https://doi.org/10.1073/pnas.2322120121
14. Sánchez-Baracaldo P, Cardona T. 2020. On the origin of oxygenic photosynthesis and cyanobacteria. New Phytol 225: 1440–1446. https://doi.org/10.1111/nph.16249
15. Oliver T, Kim TD, Trinugroho JP, Cordón-Preciado V, Wijayatilake N, Bhatia A, Rutherford AW, Cardona T. 2023. The evolution and evolvability of photosystem II. Annu Rev Plant Biol 74: 225–257. https://doi.org/10.1146/annurev-arplant-070522-062509
16. Bronstein M, Schütz M, Hauska G, Padan E, Shahak Y. 2000. Cyanobacterial sulfide-quinone reductase: cloning and heterologous expression. J Bacteriol 182: 3336–3344. https://doi.org/10.1128/JB.182.12.3336-3344.2 000
17. Wang Y, Meng Y, Ren H, Huang R, Liu J, Liu D. 2025. Synechococcus sp. PCC 7002 performs anoxygenic photosynthesis and deploys divergent strategies to cope with H2Sn and H2O2. Antioxidants (Basel) 14:1122. htt ps://doi.org/10.3390/antiox14091122
18. Nagy CI, Vass I, Rákhely G, Vass IZ, Tóth A, Duzs A, Peca L, Kruk J, Kós PB. 2014. Coregulated genes link sulfide:quinone oxidoreductase and arsenic metabolism in Synechocystis sp. strain PCC6803. J Bacteriol 196: 3430–3440. https://doi.org/10.1128/JB.01864-14
19. Grim SL, Dick GJ. 2016. Photosynthetic versatility in the genome of Geitlerinema sp. PCC 9228 (formerly Oscillatoria limnetica ’solar lake’), a model anoxygenic photosynthetic cyanobacterium. Front Microbiol 7:1546. https://doi.org/10.3389/fmicb.2016.01546
20. Parks DH, Chuvochina M, Rinke C, Mussig AJ, Chaumeil P-A, Hugenholtz P. 2022. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. Nucleic Acids Res 50:D785–D794. https://doi.org/10.1093/nar/gkab776
21. Tan S, Liu L, Jiao J-Y, Li M-M, Hu C-J, Lv A-P, Qi Y-L, Li Y-X, Rao Y-Z, Qu Y-N, Jiang H-C, Soo RM, Evans PN, Hua Z-S, Li W-J. 2024. Exploring the origins and evolution of oxygenic and anoxygenic photosynthesis in deeply branched cyanobacteriota. Mol Biol Evol 41:msae151. https://doi.org/10.1093/molbev/msae151
22. Strunecký O, Ivanova AP, Mareš J. 2023. An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis. J Phycol 59: 12–51. https://doi.org/10.1111/jpy.1330 4
23. Gouy R, Baurain D, Philippe H. 2015. Rooting the tree of life: the phylogenetic jury is still out. Philos Trans R Soc Lond B Biol Sci 370:20140329. https://doi.org/10.1098/rstb.2014.0329
24. Chikhi R, Raffestin B, Korobeynikov A, Edgar R, Babaian A. 2024. Logan: planetary-scale genome assembly surveys life’s diversity. bioRxiv. https://doi.org/10.1101/2024.07.30.605881
25. Saw JHW. 2021. Characterizing the uncultivated microbial minority: towards understanding the roles of the rare biosphere in microbial communities. mSystems 6:e0077321. https://doi.org/10.1128/mSystems. 00773-21
26. Saw JHW, Schatz M, Brown MV, Kunkel DD, Foster JS, Shick H, Christensen S, Hou S, Wan X, Donachie SP. 2013. Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai’i. PLoS One 8:e76376. https://doi.org/10.1371/journal.pone.0076376
27. Laybourn-Parry J, Bell EM. 2014. Ace Lake: three decades of research on a meromictic, Antarctic lake. Polar Biol 37: 1685–1699. https://doi.org/10.1007/s00300-014-1553-3
28. Jungblut AD, Hawes I, Mackey TJ, Krusor M, Doran PT, Sumner DY, Eisen JA, Hillman C, Goroncy AK. 2016. Microbial mat communities along an oxygen gradient in a perennially ice-covered Antarctic lake. Appl Environ Microbiol 82: 620–630. https://doi.org/10.1128/AEM.02699-15
29. Lumian JE, Jungblut AD, Dillion ML, Hawes I, Doran PT, Mackey TJ, Dick GJ, Grettenberger CL, Sumner DY. 2021. Metabolic capacity of the Antarctic cyanobacterium Phormidium pseudopriestleyi that sustains oxygenic photosynthesis in the presence of hydrogen sulfide. Genes (Basel) 12:426. https://doi.org/10.3390/genes12030426
30. Cardona T, Murray JW, Rutherford AW. 2015. Origin and evolution of water oxidation before the last common ancestor of the cyanobacteria. Mol Biol Evol 32: 1310–1328. https://doi.org/10.1093/molbev/msv024
31. Sheridan KJ, Duncan EJ, Eaton-Rye JJ, Summerfield TC. 2020. The diversity and distribution of D1 proteins in cyanobacteria. Photosynth Res 145: 111–128. https://doi.org/10.1007/s11120-020-00762-7
32. Nakamura Y, Kaneko T, Sato S, Mimuro M, Miyashita H, Tsuchiya T, Sasamoto S, Watanabe A, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Nakazaki N, Shimpo S, Takeuchi C, Yamada M, Tabata S. 2003. Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids. DNA Res 10: 137–145. https://doi.org/10.1093/dnares/10.4.137