Article (Scientific journals)
Bidsme: expandable BIDS-ifier of brain imagery datasets
Beliy, Nikita; Guillemin, Camille; Pommier, Emeline et al.
2023In Journal of Open Source Software, 8 (92), p. 5575
Peer Reviewed verified by ORBi
 

Files


Full Text
10.21105.joss.05575.pdf
Publisher postprint (342.41 kB) Creative Commons License - Attribution
Download

All documents in ORBi are protected by a user license.

Send to



Details



Keywords :
BIDS
Abstract :
[en] The purpose of Bidsme is to organize a given medical image dataset following the "Brain Imaging Data Structure" (BIDS). Bidsme is an all-in-one organizer tool, that not only renames and re-structures the original data files, but also extracts and formats the necessary metadata. During the data organization, Bidsme provides the user with the full control over these processes, allowing the use of non-standard metadata and file names, as well as the addition of modalities not yet described by the BIDS. Instead of strictly imposing this structure, Bidsme allows the user to fully configure how the source dataset will be organized and what metadata will be included. Bidsme can be used both as Python package and command-line tool, and includes a tutorial with a test dataset.
Research center :
CRC - Centre de Recherches du Cyclotron - ULiège [BE]
Disciplines :
Radiology, nuclear medicine & imaging
Author, co-author :
Beliy, Nikita ;  Université de Liège - ULiège > GIGA > GIGA CRC In vivo Imaging - Aging & Memory
Guillemin, Camille ;  Université de Liège - ULiège > GIGA > GIGA CRC In vivo Imaging - Aging & Memory
Pommier, Emeline
Hammad, Grégory  ;  Université de Liège - ULiège > GIGA > GIGA CRC In vivo Imaging - Sleep and chronobiology
Phillips, Christophe  ;  Université de Liège - ULiège > GIGA > GIGA CRC In vivo Imaging - Neuroimaging, data acquisition and processing
Language :
English
Title :
Bidsme: expandable BIDS-ifier of brain imagery datasets
Publication date :
04 December 2023
Journal title :
Journal of Open Source Software
eISSN :
2475-9066
Publisher :
The Open Journal
Volume :
8
Issue :
92
Pages :
5575
Peer reviewed :
Peer Reviewed verified by ORBi
Name of the research project :
EOS
Funders :
F.R.S.-FNRS - Fonds de la Recherche Scientifique [BE]
Funding number :
EOS 30446199
Available on ORBi :
since 04 December 2023

Statistics


Number of views
21 (7 by ULiège)
Number of downloads
2 (0 by ULiège)

Bibliography


Similar publications



Contact ORBi