[en] Rhabdoviruses consist of several genomically diverse and important pathogens of human-, animal- and plant-infecting viruses that replicate in their vectors and are persistently transmitted in a circulative-propagative mode. It is still hypothesized that plant-pathogenic rhabdoviruses are derived from arthropod-borne viruses, while, the essential plant rhabdoviral Glycoprotein is still PFAM-unassigned and poorly characterized. Over the last decade, the expansion of viral high-throughput sequencing-generated proteomic data have paved the way for novel evolutionary and biological interpretations. To address this, we combined data visualization with an ML-driven computational approach implemented on analysis of protein biophysical properties to study glycoproteins among rhabdoviruses. The results indicate that diverse vector-specific Gps within plant-pathogenic rhabdoviruses exhibit distinct conformational variability landscapes in intrinsically disordered regions while sharing common patterns with insect rhabdoviruses. Combining data visualization with proteomic features in our alignment-free approach will open novel avenues for viral proteomics.
Research Center/Unit :
TERRA Research Centre. Modélisation et développement - ULiège TERRA Research Centre. Gestion durable des bio-agresseurs - ULiège
Disciplines :
Life sciences: Multidisciplinary, general & others Biochemistry, biophysics & molecular biology Phytobiology (plant sciences, forestry, mycology...)
Author, co-author :
Simankov, Nikolay ; Université de Liège - ULiège > TERRA Research Centre > Gestion durable des bio-agresseurs ; ULiège - Université de Liège [BE] > Département GxABT > Modélisation et développement
Soyeurt, Hélène ; Université de Liège - ULiège > Département GxABT > Modélisation et développement
Massart, Sébastien ; Université de Liège - ULiège > TERRA Research Centre > Gestion durable des bio-agresseurs
Tahzima, Rachid ; Université de Liège - ULiège > Département GxABT > Gestion durable des bio-agresseurs ; ILVO - Institute for Agricultural and Fisheries Research [BE]
Language :
English
Title :
High Specificity in Disordered Domains of The Glycoprotein in The Family Rhabdoviridae
Alternative titles :
[fr] Haute Spécificité dans les Domaines Désordonnés de la Glycoprotéine dans la Famille des Rhabdoviridae
Original title :
[en] High Specificity in Disordered Domains of The Glycoprotein in The Family Rhabdoviridae