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High Specificity in Disordered Domains of The Glycoprotein in The Family Rhabdoviridae
Simankov, Nikolay; Soyeurt, Hélène; Massart, Sébastien et al.
2023VizBi 2023 - Visualizing Biological Data
 

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Keywords :
Proteomics; Biophysics; Viruses; Plant Viruses; Glycoprotein; Machine Learning; Epidemiology
Abstract :
[en] Rhabdoviruses consist of several genomically diverse and important pathogens of human-, animal- and plant-infecting viruses that replicate in their vectors and are persistently transmitted in a circulative-propagative mode. It is still hypothesized that plant-pathogenic rhabdoviruses are derived from arthropod-borne viruses, while, the essential plant rhabdoviral Glycoprotein is still PFAM-unassigned and poorly characterized. Over the last decade, the expansion of viral high-throughput sequencing-generated proteomic data have paved the way for novel evolutionary and biological interpretations. To address this, we combined data visualization with an ML-driven computational approach implemented on analysis of protein biophysical properties to study glycoproteins among rhabdoviruses. The results indicate that diverse vector-specific Gps within plant-pathogenic rhabdoviruses exhibit distinct conformational variability landscapes in intrinsically disordered regions while sharing common patterns with insect rhabdoviruses. Combining data visualization with proteomic features in our alignment-free approach will open novel avenues for viral proteomics.
Research center :
TERRA Research Centre. Modélisation et développement - ULiège
TERRA Research Centre. Gestion durable des bio-agresseurs - ULiège
Disciplines :
Life sciences: Multidisciplinary, general & others
Biochemistry, biophysics & molecular biology
Phytobiology (plant sciences, forestry, mycology...)
Author, co-author :
Simankov, Nikolay ;  Université de Liège - ULiège > TERRA Research Centre > Gestion durable des bio-agresseurs ; ULiège - Université de Liège [BE] > Département GxABT > Modélisation et développement
Soyeurt, Hélène  ;  Université de Liège - ULiège > Département GxABT > Modélisation et développement
Massart, Sébastien  ;  Université de Liège - ULiège > TERRA Research Centre > Gestion durable des bio-agresseurs
Tahzima, Rachid ;  Université de Liège - ULiège > Département GxABT > Gestion durable des bio-agresseurs ; ILVO - Institute for Agricultural and Fisheries Research [BE]
Language :
English
Title :
High Specificity in Disordered Domains of The Glycoprotein in The Family Rhabdoviridae
Alternative titles :
[fr] Haute Spécificité dans les Domaines Désordonnés de la Glycoprotéine dans la Famille des Rhabdoviridae
Original title :
[en] High Specificity in Disordered Domains of The Glycoprotein in The Family Rhabdoviridae
Publication date :
31 March 2023
Number of pages :
1
Event name :
VizBi 2023 - Visualizing Biological Data
Event organizer :
EMBL : European Molecular Biology Laboratory
Event place :
Heidelberg, Germany
Event date :
du 28 au 31 mars 2023
Audience :
International
Name of the research project :
Prediction and validation of biological properties of plant viruses using -omic data through machine learning.
Funders :
F.R.S.-FNRS - Fonds de la Recherche Scientifique [BE]
Funding text :
Cette communication bénéficie du soutien de la Région wallonne dans le cadre du financement d’une bourse FRIA.
Available on ORBi :
since 17 April 2023

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