Ceugniez, A.; Univ. Lille, INRA, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 – ICV - Institut Charles Viollette, Lille, France
Taminiau, Bernard ; Université de Liège - ULiège > Département de sciences des denrées alimentaires (DDA) > Microbiologie des denrées alimentaires
Coucheney, F.; Univ. Lille, INRA, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 – ICV - Institut Charles Viollette, Lille, France
Jacques, Philippe ; Université de Liège - ULiège > Agronomie, Bio-ingénierie et Chimie (AgroBioChem) > Microbial, food and biobased technologies
Delcenserie, Véronique ; Université de Liège - ULiège > Département de sciences des denrées alimentaires (DDA) > Gestion de la qualité dans la chaîne alimentaire
Daube, Georges ; Université de Liège - ULiège > Département de sciences des denrées alimentaires (DDA) > Microbiologie des denrées alimentaires
Drider, D.; Univ. Lille, INRA, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 – ICV - Institut Charles Viollette, Lille, France
Title :
Fungal diversity of “Tomme d'Orchies” cheese during the ripening process as revealed by a metagenomic study
scite shows how a scientific paper has been cited by providing the context of the citation, a classification describing whether it supports, mentions, or contrasts the cited claim, and a label indicating in which section the citation was made.
Bibliography
Atanassova, M.R., Fernández-Otero, C., Rodríguez-Alonso, P., Fernández-No, I.C., Garabal, J.I., Centeno, J.A., Characterization of yeasts isolated from artisanal short-ripened cows' cheeses produced in Galicia (NW Spain). Food Microbiol. 53 (2016), 172–181, 10.1016/j.fm.2015.09.012.
Banjara, N., Suhr, M.J., Hallen-Adams, H.E., Diversity of yeast and mold species from a variety of cheese types. Curr. Microbiol. 70 (2015), 792–800, 10.1007/s00284-015-0790-1.
Beresford, T.P., Fitzsimons, N.A., Brennan, N.L., Cogan, T.M., Recent advances in cheese microbiology. Int. Dairy J. 11 (2001), 259–274, 10.1016/S0958-6946(01)00056-5.
Bokulich, N.A., Mills, D.A., Next-generation approaches to the microbial ecology of food fermentations. BMB Rep. 45 (2012), 377–389, 10.5483/BMBRep.2012.45.7.148.
Boutrou, R., Kerriou, L., Gassi, J.-Y., Contribution of Geotrichum candidum to the proteolysis of soft cheese. Int. Dairy J. 16 (2006), 775–783.
Ceugniez, A., Drider, D., Jacques, P., Coucheney, F., Yeast diversity in a traditional French cheese “Tomme d'Orchies” reveals infrequent and frequent species with associated benefits. Food Microbiol. 52 (2015), 177–184, 10.1016/j.fm.2015.08.001.
Ceugniez, A., Taminiau, B., Coucheney, F., Jacques, P., Delcenserie, V., Daube, G., Drider, D., Use of a metagenetic approach to monitor the bacterial microbiota of “Tomme d'Orchies” cheese during the ripening process. Int. J. Food Microbiol., 2016, 10.1016/j.ijfoodmicro.2016.10.034.
Cocolin, L., Aggio, D., Manzano, M., Cantoni, C., Comi, G., An application of PCR-DGGE analysis to profile the yeast populations in raw milk. Int. Dairy J. 12 (2002), 407–411, 10.1016/S0958-6946(02)00023-7.
Corbo, M.R., Lanciotti, R., Albenzio, M., Sinigaglia, M., Occurrence and characterization of yeasts isolated from milks and dairy products of Apulia region. Int. J. Food Microbiol. 69 (2001), 147–152.
Corsetti, A., Rossi, J., Gobbetti, M., Interactions between yeasts and bacteria in the smear surface-ripened cheeses. Int. J. Food Microbiol. 69 (2001), 1–10, 10.1016/S0168-1605(01)00567-0.
Delavenne, E., Mounier, J., Asmani, K., Jany, J.-L., Barbier, G., Le Blay, G., Fungal diversity in cow, goat and ewe milk. Int. J. Food Microbiol. 151 (2011), 247–251, 10.1016/j.ijfoodmicro.2011.08.029.
Delcenserie, V., Taminiau, B., Delhalle, L., Nezer, C., Doyen, P., Crevecoeur, S., Roussey, D., Korsak, N., Daube, G., Microbiota characterization of a Belgian protected designation of origin cheese, Herve cheese, using metagenomic analysis. J. Dairy Sci. 97 (2014), 6046–6056, 10.3168/jds.2014-8225.
Fadda, M., Mossa, V., Pisano, M., Deplano, M., Cosentino, S., Occurrence and characterization of yeasts isolated from artisanal Fiore Sardo cheese. Int. J. Food Microbiol. 95 (2004), 51–59, 10.1016/j.ijfoodmicro.2004.02.001.
Fleet, G.H., Yeast spoilage of foods and beverages. Kurtzman, C.P., Fell, J.W., Boekhout, T., (eds.) The Yeasts: A Taxonomic Study, 2011, Elsevier, Amsterdam, 53–63.
Franzosa, E.A., Hsu, T., Sirota-Madi, A., Shafquat, A., Abu-Ali, G., Morgan, X.C., Huttenhower, C., Sequencing and beyond: integrating molecular “omics” for microbial community profiling. Nat. Rev. Microbiol. 13 (2015), 360–372, 10.1038/nrmicro3451.
Guého-Kellermann, E., Batra, R., Boekhout, T., Malassezia Baillon (1889). Kurtzman, C.P., Fell, J.W., Boekhout, T., (eds.) The Yeasts: A Taxonomic Study, 2011, Elsevier, Amsterdam, 1807–1832.
Irlinger, F., Mounier, J., Microbial interactions in cheese: implications for cheese quality and safety. Curr. Opin. Biotechnol. 20 (2009), 142–148, 10.1016/j.copbio.2009.02.016.
Jacques, N., Casaregola, S., Safety assessment of dairy microorganisms: the hemiascomycetous yeasts. Int. J. Food Microbiol. 126 (2008), 321–326, 10.1016/j.ijfoodmicro.2007.08.020.
Jakobsen, M., Narvhus, J., Yeasts and their possible beneficial and negative effects on the quality of dairy products. Int. Dairy J. 6 (1996), 755–768, 10.1016/0958-6946(95)00071-2.
Kõljalg, U., Nilsson, R.H., Abarenkov, K., Tedersoo, L., Taylor, A.F.S., Bahram, M., Bates, S.T., Bruns, T.D., Bengtsson-Palme, J., Callaghan, T.M., Douglas, B., Drenkhan, T., Eberhardt, U., Dueñas, M., Grebenc, T., Griffith, G.W., Hartmann, M., Kirk, P.M., Kohout, P., Larsson, E., Lindahl, B.D., Lücking, R., Martín, M.P., Matheny, P.B., Nguyen, N.H., Niskanen, T., Oja, J., Peay, K.G., Peintner, U., Peterson, M., Põldmaa, K., Saag, L., Saar, I., Schüßler, A., Scott, J.A., Senés, C., Smith, M.E., Suija, A., Taylor, D.L., Telleria, M.T., Weiss, M., Larsson, K.-H., Towards a unified paradigm for sequence-based identification of fungi. Mol. Ecol. 22 (2013), 5271–5277, 10.1111/mec.12481.
Kurtzman, C.P., Yarrowia van der Walt & von Arx (1980). Kurtzman, C.P., Fell, J.W., Boekhout, T., (eds.) The Yeasts: A Taxonomic Study, 2011, Elsevier, Amsterdam, 927–929.
Lavoie, K., Touchette, M., St-Gelais, D., Labrie, S., Characterization of the fungal microflora in raw milk and specialty cheeses of the province of Quebec. Dairy Sci. Technol. 92 (2012), 455–468, 10.1007/s13594-011-0051-4.
Lindahl, B.D., Nilsson, R.H., Tedersoo, L., Abarenkov, K., Carlsen, T., Kjøller, R., Kõljalg, U., Pennanen, T., Rosendahl, S., Stenlid, J., Kauserud, H., Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide. New Phytol. 199 (2013), 288–299, 10.1111/nph.12243.
Lopandic, K., Zelger, S., Bánszky, L.K., Eliskases-Lechner, F., Prillinger, H., Identification of yeasts associated with milk products using traditional and molecular techniques. Food Microbiol. 23 (2006), 341–350, 10.1016/j.fm.2005.05.001.
Lozupone, C.A., Knight, R., Global patterns in bacterial diversity. Proc. Natl. Acad. Sci. 104 (2007), 11436–11440, 10.1073/pnas.0611525104.
Minervini, F., Montagna, M.T., Spilotros, G., Monaci, L., Santacroce, M.P., Visconti, A., Survey on mycoflora of cow and buffalo dairy products from Southern Italy. Int. J. Food Microbiol. 69 (2001), 141–146.
Ogier, J.-C., Son, O., Gruss, A., Tailliez, P., Delacroix-Buchet, A., Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis. Appl. Environ. Microbiol. 68 (2002), 3691–3701.
Quigley, L., O'Sullivan, O., Stanton, C., Beresford, T.P., Ross, R.P., Fitzgerald, G.F., Cotter, P.D., The complex microbiota of raw milk. FEMS Microbiol. Rev. 37 (2013), 664–698, 10.1111/1574-6976.12030.
Rodriguez, C., Taminiau, B., Brévers, B., Avesani, V., Van Broeck, J., Leroux, A., Gallot, M., Bruwier, A., Amory, H., Delmée, M., Daube, G., Faecal microbiota characterisation of horses using 16 rDNA barcoded pyrosequencing, and carriage rate of Clostridium difficile at hospital admission. BMC Microbiol., 15, 2015, 1, 10.1186/s12866-015-0514-5.
Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., Chen, W., Bolchacova, E., Voigt, K., Crous, P.W., Fungal barcoding consortium, Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc. Natl. Acad. Sci. 109 (2012), 6241–6246.
Toju, H., Tanabe, A.S., Yamamoto, S., Sato, H., High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. PLoS One, 7, 2012, e40863, 10.1371/journal.pone.0040863.
Vaughan-Martini, A., Lachance, M.-A., Kurtzman, C.P., Kazachstania Zubkova (1971). Kurtzman, C.P., Fell, J.W., Boekhout, T., (eds.) The Yeasts: A Taxonomic Study, 2011, Elsevier, Amsterdam, 439–470.
Wojtatowicz, M., Chrzanowska, J., Juszczyk, P., Skiba, A., Gdula, A., Identification and biochemical characteristics of yeast microflora of Rokpol cheese. Int. J. Food Microbiol. 69 (2001), 135–140, 10.1016/S0168-1605(01)00582-7.
Wolfe, B.E., Button, J.E., Santarelli, M., Dutton, R.J., Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158 (2014), 422–433, 10.1016/j.cell.2014.05.041.
Similar publications
Sorry the service is unavailable at the moment. Please try again later.
This website uses cookies to improve user experience. Read more
Save & Close
Accept all
Decline all
Show detailsHide details
Cookie declaration
About cookies
Strictly necessary
Performance
Strictly necessary cookies allow core website functionality such as user login and account management. The website cannot be used properly without strictly necessary cookies.
This cookie is used by Cookie-Script.com service to remember visitor cookie consent preferences. It is necessary for Cookie-Script.com cookie banner to work properly.
Performance cookies are used to see how visitors use the website, eg. analytics cookies. Those cookies cannot be used to directly identify a certain visitor.
Used to store the attribution information, the referrer initially used to visit the website
Cookies are small text files that are placed on your computer by websites that you visit. Websites use cookies to help users navigate efficiently and perform certain functions. Cookies that are required for the website to operate properly are allowed to be set without your permission. All other cookies need to be approved before they can be set in the browser.
You can change your consent to cookie usage at any time on our Privacy Policy page.