Progress on research on rodents and rodent-borne zoonoses in Southeast Asia

Blasdell, Kim; Bordes, Frédéric; Chaisiri, Kittipong; Chaval, Yannick; Claude, Julien; Cosson, Jean-François; Latinne, Alice; Michaux, Johan; Morand, Serge; Pagès, Marie; Tran, Annelise

doi:10.1071/WR14201

Download

Article (Scientific journals)

Progress on research on rodents and rodent-borne zoonoses in Southeast Asia

Blasdell, Kim; Bordes, Frédéric; Chaisiri, Kittipong et al.

2015 • In Wildlife Research, 42 (2), p. 98-107

Peer Reviewed verified by ORBi

Permalink
https://hdl.handle.net/2268/177548

DOI
10.1071/WR14201

Files (1)Send to Details Statistics Bibliography Similar publications

Files

Full Text

Blasdell et al 2015 WR.pdf

Publisher postprint (619.56 kB)

Download

All documents in ORBi are protected by a user license.

Send to

RIS BibTex APA Chicago Permalink X Linkedin

Details

Keywords :

Rattus; Rattini; rodents; rodent-borne diseases; Southeast Asia; phylogeny; barcoding; habitat

Abstract :

[en] This review aims to synthesize the knowledge on the taxonomy of Southeast Asian murine rodents and the challenges associated with the identification of habitat preferences and associated rodent-borne diseases. Recent studies concerning the Rattini tribe have identified unclear species boundaries that would benefit from further investigation. The development of barcoding may allow more accurate identification of rodents, specifically for complex species. However, knowledge on the distribution and habitat specializations of many common murine rodents is still scarce, particularly regarding the specific habitat preferences of most synanthropic rodent species (Rattus tanezumi or Rattus exulans). Several studies have analyzed the prevalence of major rodent-borne diseases in Southeast Asia and it appears that the greatest risk of rodent zoonoses are in the lowland rainfed and irrigated landscapes, generally in and around rice fields.

Disciplines :

Genetics & genetic processes
Environmental sciences & ecology
Zoology

Author, co-author :

Blasdell, Kim

Bordes, Frédéric

Chaisiri, Kittipong

Chaval, Yannick

Claude, Julien

Cosson, Jean-François

Latinne, Alice ; Université de Liège - ULiège > Département des sciences de la vie > Département des sciences de la vie

Michaux, Johan ; Université de Liège - ULiège > Département des sciences de la vie > Génétique et physiologie des microalgues

Morand, Serge

Pagès, Marie

Tran, Annelise

Language :

English

Title :

Progress on research on rodents and rodent-borne zoonoses in Southeast Asia

Publication date :

30 March 2015

Journal title :

Wildlife Research

ISSN :

1035-3712

Publisher :

CSIRO Publishing

Volume :

Issue :

Pages :

98-107

Peer reviewed :

Peer Reviewed verified by ORBi

Available on ORBi :

since 27 January 2015

Statistics

Number of views

173 (7 by ULiège)

Number of downloads

877 (1 by ULiège)

More statistics

Scopus citations^®

Scopus citations^®
without self-citations

OpenCitations

OpenAlex citations

Bibliography

Adler, G. H. (1995). Habitat relations within lowland grassland rodent communities in Taiwan. Journal of Zoology 237, 563-576. doi:10.1111/j.1469-7998.1995.tb05015.x
Adler, G. H., Mangan, S. A., and Suntsov, V. (1999). Richness, abundance, and habitat relations of rodents in the Lang Bian mountains of southern Viet Nam. Journal of Mammalogy 80, 891-898. doi:10.2307/1383257
Ahmed, A., Engelberts, M. F. M., Boer, K. R., Ahmed, N., and Hartskeerl, R. A. (2009). Developmentand validationofareal-time PCRfor detection of pathogenic leptospira species in clinical materials. PLoS ONE 4, e7093. doi:10.1371/journal.pone.0007093
Al-Sabi, M. N. S., and Kapel, C. M. O. (2011). Multiplex PCR identification of Taenia spp. in rodents and carnivores. Parasitology Research 109, 1293-1298. doi:10.1007/s00436-011-2373-9
Aplin, K. P., Brown, P. R., Jacob, J., Krebs, C., and Singleton, G. R. (2003). 'Field methods for rodent StudiesinAsia and theIndo-Pacific. ' Australian Centre for International Agricultural Research Monograph No. 100 (Australian Centre for International Agricultural Research: Canberra.)
Aplin, K., Suzuki, H., Chinen, A. A., Chesser, R. T., Ten Have, J., Donnellan, S. C., Austin, J., Frost, A., Gonzalez, J.-P., Herbreteau, V., Catzeflis, F., Soubrier, J., Fang, Y.-P., Robins, J., Matisoo-Smith, E., Bastos, A. D. S., Maryanto, I., Sinaga, M. H., Denys, C., Van Den Bussche, R. A., Conroy, C., Rowe, K., and Cooper, A. (2011). Multiple geographic origins of commensalism and complex dispersal history of Black Rats. PLoS ONE 6, e26357. doi:10.1371/journal.pone.0026357
Armstrong, L. R., Zaki, S. R., Goldoft, M. J., Todd, R. L., Khan, A. S., Khabbaz, R. F., Ksiazek, T. G., and Peters, C. J. (1995). Hantavirus pulmonary syndrome associated with entering or cleaning rarely used, rodent-infested structures. The Journal of Infectious Diseases 172, 1166. doi:10.1093/infdis/172.4.1166
Badenhorst, D., Herbreteau, V., Chaval, Y., Page, M., Robinson, T. J., Rerkamnuaychoke, W., Morand, S., Hugot, J.-P., and Dobigny, G. (2009). New karyotypic data for Asian rodents (Rodentia, Muridae) with the first report of B-chromosomes in the genus Mus. Journal of Zoology 279, 44-56. doi:10.1111/j.1469-7998.2009.00588.x
Blasdell, K., Cosson, J.-F., Chaval, Y., Herbreteau, V., Douangboupha, B., Jittapalapong, S., Lundqvist, A., Hugot, J.-P., Morand, S., and Buchy, P. (2011). Rodent-born ehantavir uses in Cambodia, Laos PDR and Thailand. Eco Health 8, 432-443. doi:10.1007/s10393-011-0725-7
Bordes, F., and Morand, S. (2009). Parasite diversity: an overlooked metric of parasite pressures? Oikos 118, 801-806. doi:10.1111/j.1600-0706.2008.17169.x
Bordes, F., Herbreteau, V., Dupuy, S., Chaval, Y., Tran, A., and Morand, S. (2013). The diversity of microparasites of rodents: a comparative analysis that helps in identifying rodent-borne rich habitats in Southeast Asia. Infection Ecology and Epidemiology 3, 20178. doi:10.3402/iee.v3i0.20178
Brown, J. L., Tingpalapong, M., and Andrews, W. K. (1979). Serological survey of feral rodents in Thailand for evidence of rabies virus infection. Journal of Wildlife Diseases 15, 601-606. doi:10.7589/0090-3558-15.4.601
Brown, P. B., Phu Tuan, N., Singleton, G. R., Thi Hue, D., Thi Hoa, P., Thi Thu Ha, P., Quang Tan, T., and Van Tuat, N. (2005). Population dynamics of Rattus argentiventer, Rattus losea, and Rattus rattus inhabiting a mixed-farming system in the red river delta, Vietnam. Population Ecology 47, 247-256. doi:10.1007/s10144-005-0228-x
Castle, K. T., Kosoy, M., Lerdthusnee, K., Phelan, L., Bai, Y., Gage, K. L., Leepitakrat, W., Monkanna, T., Khlaimanee, N., Chandranoi, K., Jones, J. W., and Coleman, R. E. (2004). Prevalence and diversity of Bartonella in rodents of northern Thailand: a comparison with Bartonella in rodents from southern China. The American Journal of Tropical Medicine and Hygiene 70, 429-433.
Chaisiri, K., Siribat, P., Ribas, A., and Morand, S. (2015). Potentially zoonotic helminthiases of murid rodents from the Indo-Chinese peninsula: impact of habitat and the risk of human infection. Vector-Borne and Zoonotic Diseases (Larchmont, N. Y.) 15, 73-85. doi:10.1089/vbz.2014.1619
Charles, J. K., and Ang, B. B. (2010). Non-volant small mammal community responses to fragmentation of kerangas forests in Brunei Darussalam. Biodiversity and Conservation 19, 543-561. doi:10.1007/s10531-009-9691-6
Chaval, Y., Dobigny, G., Michaux, J., Cosson, J. F., and Herbreteau, V. (2010). A multi-approach survey as the most reliable tool to accurately assess biodiversity: an example of Thai murine rodents. Kasetsart Journal of Natural Sciences 44, 590-603.
Chero, J. C., Saito, M., Bustos, J. A., Blanco, E. M., Gonzalvez, G., and Garcia, H. H. (2007). Hymenolepis nana infection: symptoms and response to nitazoxanide in field conditions. Transactions of the Royal Society of Tropical Medicine and Hygiene 101, 203-205. doi:10.1016/j.trstmh.2006.04.004
Coker, R. J., Hunter, B. M., Rudge, J. W., Liverani, M., andHanvoravongchai, P. (2011). Emerging infectious diseases in Southeast Asia: regional challenges to control. Lancet 377, 599-609. doi:10.1016/S0140-6736(10)62004-1
Coleman, R. E., Taweesak, M., Linthicum, K. T., Monkanna, T., Linthicum, K. J., Strickman, D. A., Frances, S. P., Tanskul, P., Kollars, T. M. Jr, Inlao, I., Watcharapichat, P., Khlaimanee, N., Phulsuksombati, D., Sangjun, N., and Lerdthusnee, K. (2003). Occurrence of Orientia tsutsugamushi in small mammals from Thailand. The American Journal of Tropical Medicine and Hygiene 69, 519-524.
Cosson, J.-F., Picardeau, M., Mielcarek, M., Tatard, C., Chaval, Y., Suputtamongkol, Y., Buchy, P., Jittapalapong, S., Herbreteau, V., and Morand, S. (2014). Epidemiology of Leptospira transmitted by rodents in Southeast Asia. PLoS Neglected Tropical Diseases 8, e2902. doi:10.1371/journal.pntd.0002902
Dantrakool, A., Somboon, P., Hashimoto, T., and Saito-Ito, A. (2004). Identification of a new type of Babesia species in wild rats (Bandicota indica) in Chiang Mai province, Thailand. Journal of Clinical Microbiology 42, 850-854. doi:10.1128/JCM.42.2.850-854.2004
Dupuy, S., Herbreteau, V., Feyfant, T., Morand, S., and Tran, A. (2012). Land-cover dynamics in southeast Asia: contribution of object-oriented techniques for change detection. In: 'Proceedings of the 4th International Conference on GEographic Object-Based Image Analysis (GEOBIA)'. (Ed. R. Queiroz Feitosa) pp. 217-222. (Pontifícia Universidade Católica do Rio de Janeiro: Rio de Janeiro.)
Fabre, P.-H., Pagès, M., Musser, G. G., Fitriana, Y. S., Fjeldså, J., Jennings, A., Jønsson, K. A., Kennedy, J., Michaux, J., Semiadi, G., Supriatna, N., and Helgen, K. M. (2013). A new genus of rodent from Wallacea (Rodentia: Muridae: Murinae: Rattini), and its implication for biogeography and Indo-Pacific Rattini systematics. Zoological Journal of the Linnean Society 169, 408-447. doi:10.1111/zoj.12061
Francis, C. M. (2008). 'A Field Guide to the Mammals of South-East Asia. ' (New Holland: London.)
Gadea, I., Cuenca-Estrella, M., Benito, N., Blanco, A., Fernández-Guerrero, M. L., Valero-Guillén, P. L., and Soriano, F. (2000). Bordetella hinzii, a 'new' opportunistic pathogen to think about. The Journal of Infection 40, 298-299. doi:10.1053/jinf.2000.0646
Galan, M., Pagès, M., and Cosson, J.-F. (2012). Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples. PLoS ONE 7, e48374. doi:10.1371/journal.pone.0048374
Gillespie, T. R., and Chapman, C. (2008). Forest fragmentation, the decline of an endangered primate, and changes in host-parasite interactions relative to an unfragmented forest. American Journal of Primatology 70, 222-230. doi:10.1002/ajp.20475
Hajibabaei, M., Singer, G. A., Hebert, P. D. N., and Hickey, D. A. (2007). DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics 23, 167-172. doi:10.1016/j.tig.2007.02.001
Haydon, D. T., Cleaveland, S., Taylor, L. H., and Laurenson, M. K. (2002). Identifying reservoirs of infection: a conceptual and practical challenge. Emerging Infectious Diseases 8, 1468-1473. doi:10.3201/eid0812.010317
Heaney, L. R. (2011). Discovering diversity: studies of the mammals of Luzon island, Philippines. Fieldiana Life and Earth Sciences 2, 88-95. doi:10.3201/eid0812.010317
Herbreteau, V., Jittapalapong, S., Rerkamnuaychoke, W., Chaval, Y., Cosson, J.-F., and Morand, S. (Eds). (2011). 'Protocols for field and laboratory rodent studies. ' (Kasetsart University Press: Bangkok.)
Herbreteau, V., Bordes, F., Jittapalapong, S., Supputamongkol, Y., and Morand, S. (2012). Rodent-borne diseases in Thailand: targeting rodent carriers and risky habitats. Infection Ecology & Epidemiology 2, 2-6. doi:10.3402/iee.v2i0.18637
Hong, S. J., Woo, H. C., and Chai, J. Y. (1996). A human case of Plagiorchis muris (Tanabe, 1922: Digenea) infection in the Republic of Korea: freshwater fish as a possible source of infection. The Journal of Parasitology 82, 647-649. doi:10.2307/3283795
Ivanova, S., Herbreteau, V., Blasdell, K., Chaval, Y., Buchy, P., Guillard, B., and Morand, S. (2012). Leptospira and rodents in Cambodia: environmental determinants of infection. The American Journal of Tropical Medicine and Hygiene 86, 1032-1038. doi:10.4269/ajtmh.2012.11-0349
Jittapalapong, S., Inpankaew, T., Sarataphan, N., Herbreteau, V., Hugot, J.-P., Morand, S., and Stich, R. W. (2008). Molecular detection of divergent trypanosomes among rodents of Thailand. Infection, Genetics and Evolution 8, 445-449. doi:10.1016/j.meegid.2007.08.002
Jittapalapong, S., Sarataphan, N., Maruyama, S., Hugot, J.-P., Morand, S., and Herbreteau, V. (2011). Seroprevalence of Toxoplasma gondii infections of rodents in Thailand. Vector Borne and Zoonotic Diseases (Larchmont, N. Y.) 11, 231-237. doi:10.1089/vbz.2009.0238
Jiyipong, T., Jittapalapong, S., Morand, S., Raoult, D., and Rolain, J.-M. (2012). Prevalence and genetic diversity of Bartonella spp. in small mammals from southeastern Asia. Applied and Environmental Microbiology 78, 8463-8466. doi:10.1128/AEM.02008-12
Jiyipong, T., Morand, S., Jittapalapong, S., Raoult, D., and Rolain, J.-M. (2013). Bordetella hinzii in rodent, Southeast Asia. Emerging Infectious Diseases 19, 502-503. doi:10.3201/eid1903.120987
Jiyipong, T., Jittapalapong, S., Morand, S., and Rolain, J.-M. (2014). Bartonella species in small mammals and their potential vectors in Asia. Asian Pacific Journal of Tropical Biomedicine 4, 757-767.
Jiyipong, T., Morand, S., Jittapalapong, S., Raoult, D., and Rolain, J.-M. (2015). Bartonella spp. infections in rodents of Cambodia, Lao PDR and Thailand: identifying risky habitats. Vector-Borne and Zoonotic Diseases (Larchmont, N. Y.) 15, 48-55. doi:10.1089/vbz.2014.1621
John, A. (2014). Rodent outbreaks and rice pre-harvest losses in Southeast Asia. Food Security 6, 249-260. doi:10.1007/s12571-014-0338-4
Kosoy, M., Khlyap, L., Cosson, J.-F., and Morand, S. (2015). Aboriginal and invasive rats of genus Rattus as hosts of infectious agents. Vector-Borne and Zoonotic Diseases (Larchmont, N. Y.) 15, 3-12. doi:10.1089/vbz.2014.1629
Kuo, C.-C., Wang, H.-C., and Huang, C.-L. (2011). The potential effect of exotic Pacific rats Rattus exulans on vectors of scrub typhus. Journal of Applied Ecology 48, 192-198. doi:10.1111/j.1365-2664.2010.01909.x
Lack, J. B., Greene, D. U., Conroy, C. J., Hamilton, M. J., Braun, J. K., Mares, M. A., and Van Den Bussche, R. A. (2012). Invasion facilitates hybridization with introgression in the Rattus rattus species complex. Molecular Ecology 21, 3545-3561. doi:10.1111/j.1365-294X.2012.05620.x
Lambin, E. F., Tran, A., Vanwambeke, S. O., Linard, C., and Soti, V. (2010). Pathogenic landscapes: interactions between land, people, disease vectors, and their animal hosts. International Journal of Health Geographics 9, 54. doi:10.1186/1476-072X-9-54
Latinne, A., Waengsothorn, S., Rojanadilok, P., Eiamampai, K., Sribuarod, K., and Michaux, J. (2012). Combined mitochondrial and nuclear markers revealed a deep vicariant history for Leopoldamys neilli a cave-dwelling rodent of Thailand. PLoS ONE 7, e47670. doi:10.1371/journal.pone.0047670
Latinne, A., Waengsothorn, S., Rojanadilok, P., Eiamampai, K., Sribuarod, K., and Michaux, J. R. (2013a). Diversity and endemism of Murinae rodents in Thai limestone karsts. Systematics and Biodiversity 11, 323-344. doi:10.1080/14772000.2013.818587
Latinne, A., Chaval, Y., Waengsothorn, S., Rojanadilok, P., Eiamampai, K., Sribuarod, K., Herbreteau, V., Morand, S., and Michaux, J. R. (2013b). Is Leopoldamys neilli (Rodentia, Muridae) a synonym of Leopoldamys herberti? A reply to Balakirev et al. (2013). Zootaxa 3731, 589-598. doi:10.11646/zootaxa.3731.4.10
Lecompte, E., Aplin, K., Denys, C., Catzeflis, F., Chades, M., and Chevret, P. (2008). Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences with a new tribal classification of the subfamily. BMC Evolutionary Biology 8, 199. doi:10.1186/1471-2148-8-199
Leliaert, F., Verbruggen, H., Vanormelingen, P., Steen, F., Lopez-Bautista, J. M., Zuccarello, G. C., and De Clerck, O. (2014). DNA-based species delimitation in algae. European Journal of Phycology 49, 179-196. doi:10.1080/09670262.2014.904524
Makundi, R., and Massawe, A. (2011). Ecologically based rodent management in Africa: potential and challenges. Wildlife Research 38, 588-595. doi:10.1071/WR10147
McFarlane, R., Sleigh, A., and McMichael, T. (2012). Synanthropy of wild mammals as a determinant of emerging infectious diseases in the Asian-Australasian region. EcoHealth 9, 24-35. doi:10.1007/s10393-012-0763-9
Meerburg, B., Singleton, G. R., and Kijlstra, A. (2009). Rodent-borne diseases and their risks for public health. Critical Reviews in Microbiology 35, 221-270. doi:10.1080/10408410902989837
Milocco, C., Kamyingkird, K., Desquesnes, M., Jittapalapong, S., Herbreteau, V., Chaval, Y., Douangboupha, B., and Morand, S. (2013). Molecular demonstration of Trypanosoma evansi and Trypanosoma lewisi DNA in wild rodents from Cambodia, Lao PDR and Thailand. Transboundary and Emerging Diseases 60, 17-26. doi:10.1111/j.1865-1682.2012.01314.x
Monath, T. P. (1975). Lassafever: reviewofepidemiology andepizootiology. Bulletin of the World Health Organization 52, 577-592.
Morand, S., and Clairon, N. (2014). BiodivHealthSEA. Biodiversité et Santé en Asie du Sud-est. Ingénerie des Systèmes d'Information (Networking and Information Systems) 19, 175-179.
Morand, S., Jittapalapong, S., Supputamongkol, Y., Abdullah, M. T., and Huan, T. B. (2014). Infectious diseases and their outbreaks in Asia-Pacific: biodiversity and its regulation loss matter. PLoS ONE 9, e90032. doi:10.1371/journal.pone.0090032
Morand, S., Bordes, F., Blasdell, K., Pilosof, S., Cornu, J.-F., Chaisiri, K., Chaval, Y., Cosson, J.-F., Claude, J., Feyfant, T., Herbreteau, V., Dupuy, S., and Tran, A. (2015). Assessing the distribution of disease-bearing rodents in human-modified tropical landscapes. Journal of Applied Ecology. doi:10.1111/1365-2664.12414
Musser, G., and Carleton, M. (2005). Superfamily Muroidea. In: 'Mammal Species of the World: A Taxonomic and Geographic Reference, Volume 2'. 3rd edn. (Eds D. E. Wilson and D. M. Reeder.) pp. 894-1531. (Johns Hopkins University: Baltimore.)
Myers, N., Mittermeier, R. A., Mittermeier, C. G., da Fonseca, G. A., and Kent, J. (2000). Biodiversity hotspots for conservation priorities. Nature 403, 853-858. doi:10.1038/35002501
Nitatpattana, N., Chauvancy, G., Jumronsawat, K., Poblap, T., Yoksan, S., and Gonzalez, J.-P. (2000). Preliminary study on potential circulation of arenaviruses in the rodent population of Nakhon Pathom Province, Thailand and their medical importance in an evaluating environment. The Southeast Asian Journal of Tropical Medicine and Public Health 31, 62-65.
Ostfeld, R. S. (2009). Biodiversity loss and the rise of zoonotic pathogens. Clinical Microbiology and Infection 15(Suppl. 1), 40-43. doi:10.1111/j.1469-0691.2008.02691.x
Ostfeld, R. S., Glass, G. E., and Keesing, F. (2005). Spatial epidemiology: an emerging (or re-emerging) discipline. Trends in Ecology & Evolution 20, 328-336. doi:10.1016/j.tree.2005.03.009
Pagès, M., Chaval, Y., Herbreteau, V., Waengsothorn, S., Cosson, J.-F., Hugot, J.-P., Morand, S., and Michaux, J. (2010). Revisiting thetaxonomy of theRattini tribe: a phylogeny-based delimitation of species boundaries. BMC Evolutionary Biology 10, 184. doi:10.1186/1471-2148-10-184
Pagès, M., Bazin, E., Galan, M., Chaval, Y., Claude, J., Herbreteau, V., Michaux, J., Piry, S., Morand, S., and Cosson, J.-F. (2013). Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex). Molecular Ecology 22, 1019-1034. doi:10.1111/mec.12149
Palmeirim, M., Bordes, F., Chaisiri, K., Siribat, P., Ribas, A., and Morand, S. (2014). Helminth parasite species richness in rodents from Southeast Asia: role of host species and habitat. Parasitology Research 113, 3713-3726. doi:10.1007/s00436-014-4036-0
Paull, S. H., Song, S., McClure, K. M., Sackett, L. C., Kilpatrick, A. M., and Johnson, P. T. (2012). From superspreaders to disease hotspots: linking transmission across hosts and space. Frontiers in Ecology and the Environment 10, 75-82. doi:10.1890/110111
Pons, J., Barraclough, T. G., Gomez-Zurita, J., Cardoso, A., Duran, D. P., Hazell, S., Kamoun, S., Sumlin, W. D., and Vogler, A. P. (2006). Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55, 595-609. doi:10.1080/10635150600852011
Pumhom, P., Pognon, D., Yangtara, S., Thaprathorn, N., Milocco, C., Douangboupha, B., Herder, S., Chaval, Y., Morand, S., Jittapalapong, S., and Desquesnes, M. (2014). Molecular prevalence of Trypanosoma spp. in wild rodents of southeast Asia: influence of human settlement habitat. Infection and Epidemiology 142, 1221-1230. doi:10.1017/S0950268813002161
Pumhom, P., Morand, S., Tran, A., Jittapalapong, S., and Desquesnes, M. (2015). Trypanosoma from rodents as potential source of infection in human-shaped landscapes of South-East Asia. Veterinary Parasitology 208, 174-180. doi:10.1016/j.vetpar.2014.12.027
Püttker, T., Meyer-Lucht, Y., and Sommer, S. (2008). Effects of fragmentation on parasite burden (nematodes) of generalist and specialist small mammal species in secondary forest fragmentsofthe coastal Atlantic Forest, Brazil. Ecological Research 23, 207-215. doi:10.1007/s11284-007-0366-z
Rickart, E. A., Balete, D. S., Rowe, R. J., and Heaney, L. R. (2011). Mammals of the northern Philippines: tolerance for habitat disturbance and resistance to invasive species in an endemic fauna. Diversity & Distributions 17, 530-541. doi:10.1111/j.1472-4642.2011.00758.x
Robins, J. H., Hingston, M., Matisoo-Smith, E., and Ross, H. (2007). Identifying Rattus species using mitochondrial DNA. Molecular Ecology Notes 7, 717-729. doi:10.1111/j.1471-8286.2007.01752.x
Robins, J. H., McLenachan, P. A., Phillips, M. J., Craig, L., Ross, H. A., and Matisoo-Smith, E. (2008). Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes. Molecular Phylogenetics and Evolution 49, 460-466. doi:10.1016/j.ympev.2008.08.001
Robins, J. H., McLenachan, P. A., Phillips, M. J., McComish, B. J., Matisoo-Smith, E., and Ross, H. A. (2010). Evolutionary relationships and divergence times among the native rats of Australia. BMC Evolutionary Biology 10, 375.
Rohland, N., and Hofreiter, M. (2007). Comparison and optimization of ancient DNA extraction. BioTechniques 42, 343-352. doi:10.2144/000112383
Saisongkorh, W., Wootta, W., Sawanpanyalert, P., Raoult, D., and Rolain, J. M. (2009). 'Candidatus Bartonella thailandensis': a new genotype of Bartonella identified from rodents. Veterinary Microbiology 139, 197-201. doi:10.1016/j.vetmic.2009.05.011
Singleton, G. R. 2003. 'Impacts of Rodentson Rice Productionin Asia. ' IRRI Discussion Paper Series No. 43. (International Rice Research Institute: Los Baños, Philippines.)
Singleton, G. R., Hinds, L. A., Krebs, C. J., and Spratt, D. M. 2003. 'Rats, Mice and People: Rodent Biology and Management. ' (Australian Centre for International Agricultural Research: Canberra.)
Singleton, G. R., Belmain, S., Brown, P. R., Aplin, K., and Htwe, N. M. (2010). Impacts of rodent outbreaks on food security in Asia. Wildlife Research 37, 355-359. doi:10.1071/WR10084
Sodhi, N. S., Koh, L. P., Brook, B. W., and Ng, P. K. L. (2004). Southeast Asian biodiversity:animpending disaster. Trends in Ecology&Evolution 19, 654-660. doi:10.1016/j.tree.2004.09.006
Steppan, S., Zawadski, C., and Heaney, L. R. (2003). Molecular phylogeny of the endemic Philippine rodent Apomys (Muridae) and the dynamics of diversification in an oceanic archipelago. Biological Journal of the Linnean Society. Linnean Society of London 80, 699-715. doi:10.1111/j.1095-8312.2003.00274.x
Telfer, S., Birtles, R., Bennett, M., Lambin, X., Paterson, S., and Begon, M. (2008). Parasite interactions in natural populations: insights from longitudinal data. Parasitology 135, 767-781. doi:10.1017/S0031182008000395
Thaipadungpanit, J., Wuthiekanun, V., Chierakul, W., Smythe, L. D., Petkanchanapong, W., Limpaiboon, R., Apiwatanaporn, A., Slack, A. T., Suputtamongkol, Y., White, N. J., Feil, E. J., Day, N. P. J., and Peacock, S. J. (2007). A dominant clone of Leptospira interrogans associated with an outbreak of human leptospirosis in Thailand. PLoS Neglected Tropical Diseases 1, e56. doi:10.1371/journal.pntd.0000056
Thomson, V., Aplin, K. P., Cooper, A., Hisheh, S., Suzuki, H., Maryanto, I., Yape, G., and Donnellan, S. C. (2014). Molecular genetic evidence for the place of origin of the Pacific rat, Rattus exulans. PLoS ONE 9, e91356. doi:10.1371/journal.pone.0091356
Wells, K., Pfeiffer, M., Lakim, M. B., and Kalko, E. K. V. (2006). Movement trajectories and habitat partitioning of small mammals in logged and unlogged rain forests on Borneo. Journal of Animal Ecology 75, 1212-1223. doi:10.1111/j.1365-2656.2006.01144.x
Wells, K., Kalko, E. K. V., Lakim, M. B., and Pfeiffer, M. (2007). Effects of rain forest logging on species richness and assemblage composition of small mammals in Southeast Asia. Journal of Biogeography 34, 1087-1099. doi:10.1111/j.1365-2699.2006.01677.x
Wilcove, D. S., Giam, X., Edwards, D. P., Fisher, B., and Koh, L. P. (2013). Navjot's nightmare revisited: logging, agriculture, and biodiversity in South east Asia. Trends in Ecology & Evolution 28, 531-540. doi:10.1016/j.tree.2013.04.005
Willerslev, E., and Cooper, A. (2005). Ancient DNA. Proceedings of the Royal Society B: Biological Sciences 272, 3-16. doi:10.1098/rspb.2004.2813
Wyatt, K. B., Campos, P. F., Gilbert, M. T. P., Kolokotronis, S.-O., Hynes, W. H., DeSalle, R., Ball, S. J., Daszak, P., MacPhee, R. D. E., and Greenwood, A. D. (2008). Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease. PloS ONE3, e3602. doi:10.1371/journal.pone.0003602
Xiao, X., Boles, S., Frolking, S., Li, C., Babu, J. Y., Salas, W., and Moore, B. (2006). Mapping paddy rice agriculture in south and southeast Asia using multi-temporal MODIS images. Remote Sensing of Environment 100, 95-113. doi:10.1016/j.rse.2005.10.004