Rivière-Dobigny, T.; Centre de Biologie et de Gestion des Populations, Campus International de Baillarguet, CS 30016, 34988, Montferrier-sur-Lez, France
Herbreteau, V.; Maison de la Télédétection, 500 rue Jean-François Breton, 34093 Montpellier Cedex 5, France
Khamsavath, K.; Northern Agriculture Research, National Agriculture and Forest Research Institute, P.O. Box 7170, Vientiane, Laos
Douangboupha, B.; Northern Agriculture Research, National Agriculture and Forest Research Institute, P.O. Box 7170, Vientiane, Laos
Morand, S.; Université Montpellier II, Institut des Sciences de l'Entreprise de Montpellier, Place Eugène Bataillon-CC 064, 34095, Montpellier Cedex 5, France
Michaux, Johan ; Université de Liège - ULiège > Département des sciences de la vie > Génétique et physiologie des microalgues
Hugot, J. P.; Museum National d'Histoire Naturelle, Origine Structure et Evolution de la Biodiversite, Unité Mixte de Recherche, 5202 du Centre National de la Recherche Scientifique, 55, rue Buffon, 75231 Paris Cedex 05, France
Language :
English
Title :
Preliminary assessment of the genetic population structure of the enigmatic species Laonastes aenigmamus (Rodentia: Diatomyidae)
BANDELT, H. J., P. FORSTER, AND A. RÖHL. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16:37-48. (Pubitemid 29024937)
BRADLEY, R. D., AND R. J. BAKER. 2001. A test of the genetic species concept: cytochrome-b sequences and mammals. Journal of Mammalogy 82:960-973. (Pubitemid 33146161)
DAWSON, M. R., L. MARIVAUX, C. K. LI, K. C. BEARD, AND G. MÉTAIS. 2006. Laonastes and the Lazarus effect in recent mammals. Science 311:1456-1458. (Pubitemid 43376698)
DEFFONTAINE, V., et al. 2009. A relic bank vole lineage in the French Basque country highlights the biogeographic history of the Pyrenean region in Europe. Molecular Ecology 19:2489-2502.
DUCKWORTH, J. W., R. E. SALTER, AND K. KHOUNBOLINE. 1999. Wildlife in Lao PDR: 1999 status report. IUCN-The World Conservation Union/Wildlife Conservation Society/Centre for Protected Areas and Watershed Management, Vientiane, Laos.
EXCOFFIER, L., G. LAVAL, AND S. SCHNEIDER. 2005. Arlequin version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1:47-50.
FAULKES, C. G., E. VERHEYEN, W. VERHEYEN, J. U. M. JARVIS, AND N. C. BENNETT. 2004. Phylogeographical patterns of genetic divergence and speciation in African molerats (family: Bathyergidae). Molecular Ecology 13:613-629. (Pubitemid 38260943)
FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
FITCH, W. M. 1971. Towards defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20:406-416.
FONTAINE, H., AND D. R. WORKMAN. 1997. Vietnam. Pp. 774-782 in Encyclopedia of European and Asian regional geology (E. M. Moores and R. W. Fairbridge, eds.). Chapman & Hall, London, United Kingdom.
FU, Y. X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
GANNON, W. L., R. S. SIKES, AND THE ANIMAL CARE AND USE COMMITTEE OF THE AMERICAN SOCIETY OF MAMMALOGISTS. 2007. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy 88:809-823. (Pubitemid 47001236)
GOOSENS, B., L. CHIKHI, M. ANCRENAZ, I. LACKMAN-ANCRENAZ, P. ANDAU, AND M. W. BRUFORD. 2006. Genetic signature of anthropogenic collapse in orang-utans. PLoS Biology 4:25.
HAIPENG, L., S. J. MENG, Z. M. MEN, Y. X. FU, AND Y. P. ZHANG. 2003. Genetic diversity and population history of golden monkeys (Rhinopithecus roxellana). Genetics 164:269-275.
HARPENDING, H. C. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology 66:591-600. (Pubitemid 2117524)
HARRIS, L. 1984. The fragmented forest. University of Chicago Press, Chicago, Illinois.
HERBRETEAU, V., V. NICOLAS, R. CORNETTE, AND J. P. HUGOT. 2006. Une récente découverte au Laos: le Kha-nyou rongeur énigmatique. Le Courrier de la Nature 213:28-33.
HEWITT, G. M. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London, B. Biological Sciences 359:183-195. (Pubitemid 38231471)
HUCHON, D., et al. 2007. Multiple molecular evidences for a living mammalian fossil. Proceedings of the National Academy of Sciences 18:7495-7499. (Pubitemid 47185934)
HUELSENBECK, J. P., AND F. RONQUIST. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755. (Pubitemid 32851390)
HUELSENBECK, J. P., F. RONQUIST, R. NIELSEN, AND J. P. BOLLBACK. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314. (Pubitemid 33140548)
JENKINS, P. D., C. W. KILPATRICK, M. F. ROBINSON, AND R. J. TIMMINS. 2005. Morphological and molecular investigations of a new family, genus and species of rodent (Mammalia: Rodentia: Hystricognatha) from Lao PDR. Systematics Biodiversity 4:419-454.
KHOLODOVA, M. V., et al. 2006. Mitochondrial DNA variation and population structure of the critically endangered saiga antelope. Oryx 40:103-107.
KUO, C. H., AND F. J. JANZEN. 2004. Genetic effects of a persistent bottleneck on a natural population of ornate box turtles (Terrapene ornata). Conservation Genetics 5:425-437. (Pubitemid 39225119)
MICHAUX, J. R., M. G. FILIPPUCCI, AND R. LIBOIS. 2004. Phylogeographic history of the yellow-necked fieldmouse (Apodemus flavicollis) in Europe and in the Near and Middle East. Molecular Phylogeny and Evolution 32:188-198.
MICHAUX, J. R., E. MAGNANOU, E. PARADIS, C. NIEBERDING, AND R. M. LIBOIS. 2003. Mitochondrial phylogeography of the woodmouse (Apodemus sylvaticus) in the western Palearctic region. Molecular Ecology 12:685-697. (Pubitemid 36380427)
MOULINE, K., et al. 2008. Phylogeography of a Sahelian rodents species Mastomys huberti: a Plio-Pleistocene story of emergence and colonization of humid habitats. Molecular Ecology 17:1036-1053. (Pubitemid 351197357)
MUSSER, G. G., A. L. SMITH, M. ROBINSON, AND D. P. LUNDE. 2005. Description of a new genus and species of rodent (Murinae, Muridae, Rodentia) from the Khammouan Limestone National Biodiversity Conservation Area in Lao PDR. American Museum Novitates 3497:1-31.
NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
PALMA, R. E., AND A. E. SPOTORNO. 1999. Molecular systematics of marsupials based on the rRNA 12S mitochondrial gene: the phylogeny of Didelphimorphia and of the living fossil microbiotheriid Dromiciops gliroides Thomas. Molecular Phylogenetics and Evolution 13:525-535. (Pubitemid 129499359)
POSADA, D., AND K. A. CRANDALL. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology 50:580-601.
RAMOS-ONSINS, S., AND J. ROZAS. 2002. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution 19:2092-2100. (Pubitemid 35440445)
RAYMOND, M., AND F. ROUSSET. 1995. An exact test for population differentiation. Evolution 49:1280-1283. (Pubitemid 3025486)
RIDDLE, B. R., AND D. J. HAFNER. 1999. Species as units of analysis in ecology and biogeography: time to take the blinders off. Global Ecology and Biogeography 8:433-441.
ROBICHAUD, W., C. W. MARSH, S. SOUTHAMMAKOTH, AND S. KHOUNTHIKOUMMANE. 2001. Review of the national protected area system of Lao PDR. Lao-Swedish Forestry Programme and Department of Forestry, International Union for Conservation of Nature, Vientiane, Lao PDR.
ROZAS, J., J. C. SÁNCHEZ-DELBARRIO, X. MESSEGYER, AND R. ROZAS. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497. (Pubitemid 38016658)
SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406-425.
SWOFFORD, D. L. 2000. PAUP 4.0: phylogenetic analysis using parsimony (and other methods). Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
TAJIMA, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595. (Pubitemid 19274682)
TAJIMA, F. 1993. Measurement of DNA polymorphism. Pp. 37-59 in Mechanisms of molecular evolution (N. Takahata and A. G. Clark, eds.). SinauerAssociates, Inc., Publishers, Sunderland,Massachusetts.
TAMURA, K., J. DUDLEY, M. NEI, AND S. KUMAR. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evoution 24:1596-1599. (Pubitemid 47236692)
THOMPSON, J. D., D. G. HIGGINS, AND T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22(22):4673-4680. (Pubitemid 24354800)
WEBER, D. S., B. S. STEWART, AND N. LEHMAN. 2004. Genetic consequences of a severe population bottleneck in the Guadalupe fur seal (Arctocephalus townsendi). Journal of Heredity 95:144-153. (Pubitemid 38509731)
WILCOVE, D. S., C. H. MCLELLAN, AND A. P. DOBSON. 1986. Habitat fragmentation in the temperate zone. Pp. 237-256 in Conservation biology: the science of scarcity and diversity (M. E. Soulé, ed.). Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
WILSON, D. E., AND D. M. REEDER (EDS.). 2005. Mammal species of the world: a taxonomic and geographic reference. 3rd ed. Johns Hopkins University Press, Baltimore, Maryland.
WYNEN, L. P., et al. 2000. Postsealing genetic variation and population structure of two species of fur seals (Arctocephalus gazella and A. tropicalis). Molecular Ecology 9:299-314. (Pubitemid 30152751)
YANG, Z., AND B. RANNALA. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Molecular Biology and Evolution 14:717-724. (Pubitemid 27287292)