atopy, specific IgE, genetic loci; mouse–human homology, 8q12; Czech population
Abstract :
[en] Atopy is a predisposition to hyperproduction of
immunoglobulin E (IgE) against common environmental
allergens. It is often associated with development of allergic
diseases such as asthma, rhinitis, and dermatitis. Production
of IgE is influenced by genetic and environmental factors.
In spite of progress in the study of heredity of atopy, the
genetic mechanisms of IgE regulation have not yet been
completely elucidated. The analysis of complex traits can
benefit considerably from integration of human and mouse
genetics. Previously, we mapped a mouse IgE-controlling
locus Lmr9 on chromosome 4 to a segment of <9 Mb. In
this study, we tested levels of total IgE and 25 specific IgEs
against inhalant and food allergens in 67 Czech atopic
families. In the position homologous to Lmr9 on chromosome
8q12 marked by D8S285, we demonstrated a novel
human IgE-controlling locus exhibiting suggestive linkage
to composite inhalant allergic sensitization (limit of
detection, LOD=2.11, P=0.0009) and to nine specific
IgEs, with maximum LOD (LOD=2.42, P=0.0004) to
plantain. We also tested 16 markers at previously reported
chromosomal regions of atopy. Linkage to plant allergens
exceeding the LOD>2.0 was detected at 5q33 (D5S1507,
LOD=2.11, P=0.0009) and 13q14 (D13S165, LOD=2.74,
P=0.0002). The significant association with plant allergens
(quantitative and discrete traits) was found at 7p14
(D7S2250, corrected P=0.026) and 12q13 (D12S1298,
corrected P=0.043). Thus, the finding of linkage on
chromosome 8q12 shows precision and predictive power
of mouse models in the investigation of complex traits in
humans. Our results also confirm the role of loci at 5q33,
7p14, 12q14, and 13q13 in control of IgE.
Disciplines :
Genetics & genetic processes
Author, co-author :
Gusareva, Elena ; Université de Liège - ULiège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Bioinformatique
Havelková, Helena; Institute of Molecular Genetics, Prague, Chzech Republic > Molecular and Cellular Immunology
Blažková, Hana; Institute of Molecular Genetics, Prague, Chzech Republic > Molecular and Cellular Immunology
Kosařová, Marcela; Institute of Molecular Genetics, Prague, Chzech Republic > Molecular and Cellular Immunology
Language :
English
Title :
Mouse to human comparative genetics reveals a novel immunoglobulin E-controlling locus on Hsa8q12
Publication date :
January 2009
Journal title :
Immunogenetics
ISSN :
0093-7711
eISSN :
1432-1211
Publisher :
Springer, Germany
Volume :
61
Issue :
1
Pages :
15-25
Peer reviewed :
Peer Reviewed verified by ORBi
Name of the research project :
Impact of genetic and environmental factors on development of atopy and allergic diseases in human populations
GR Abecasis LR Cardon WOC Cookson 2000 A general test of association for quantitative traits in nuclear families Am J Hum Genet 66 279 292
GR Abecasis WOC Cookson LR Cardon 2000 Pedigree tests of transmission disequilibrium Eur J Hum Genet 8 545 551
GR Abecasis SS Cherny WO Cookson LR Cardon 2002 Merlin-rapid analysis of dense genetic maps using sparse gene flow trees Nat Genet 30 97 101
CN Adra XQ Mao H Kawada PS Gao B Korzycka JL Donate SR Shaldon P Coull M Dubowitz T Enomoto A Ozawa SA Syed T Horiuchi R Khaeraja R Khan SR Lin F Flinter P Beales A Hagihara H Inoko 1999 Chromosome 11q13 and atopic asthma Clin Genet 55 431 437
M Allen A Heinzmann E Noguchi G Abecasis J Broxholme CP Ponting S Bhattacharyya J Tinsley Y Zhang R Holt EY Jones N Lench A Carey H Jones NJ Dickens C Dimon R Nicholls C Baker L Xue E Townsend 2003 Positional cloning of a novel gene influencing asthma from chromosome 2q14 Nat Genet 35 258 263
J Altmüller C Seidel YA Lee S Loesgen D Bulle F Friedrichs H Jellouschek J Kelber A Keller A Schuster M Silbermann W Wahlen P Wolff G Schlenvoigt F Rüschendorf P Nürnberg M Wjst 2005 Phenotypic and genetic heterogeneity in a genome-wide linkage study of asthma families BMC Pulm Med 5 1
J Badalová M Svobodová H Havelková V Vladimirov J Vojtíšková J Engová T Pilcík P Volf P Demant M Lipoldová 2002 Separation and mapping of multiple genes that control IgE level in Leishmania major infected mice Genes Immun 3 187 195
KC Barnes JD Neely DL Duffy LR Freidhoff DR Breazeale C Schou RP Naidu PN Levett B Renault R Kucherlapati S Iozzino E Ehrlich TH Beaty DG Marsh 1996 Linkage of asthma and total serum IgE concentration to markers on chromosome 12q: evidence from Afro-Caribbean and Caucasian populations Genomics 37 41 50
SJ Chambers E Bertelli MS Winterbone M Regoli AL Man C Nicoletti 2004 Adoptive transfer of dendritic cells from allergic mice induces specific immunoglobulin E antibody in naïve recipients in absence of antigen challenge without altering the T helper 1/T helper 2 balance Immunology 112 72 79
SE Daniels S Bhattacharrya A James NI Leaves A Young MR Hill JA Faux GF Ryan PN le Söuef GM Lathrop AW Musk WO Cookson 1996 A genome-wide search for quantitative trait loci underlying asthma Nature 383 247 250
P Demant AAM Hart 1986 Recombinant congenic strains-a new tool for analyzing genetic traits determined by more than one gene Immunogenetics 24 416 422
MH Dizier C Besse-Schmittler M Guilloud-Bataille I Annesi-Maesano M Boussaha J Bousquet D Charpin A Degioanni F Gormand A Grimfeld J Hochez G Hyne A Lockhart M Luillier-Lacombe R Matran F Meunier F Neukirch Y Pacheco V Parent E Paty 2000 Genome screen for asthma and related phenotypes in the French EGEA study Am J Respir Crit Care Med 162 1812 1818
MA Ferreira L O'Gorman P Le Souëf PR Burton BG Toelle CF Robertson PM Visscher NG Martin DL Duffy 2005 Robust estimation of experimentwise P values applied to a genome scan of multiple asthma traits identifies a new region of significant linkage on chromosome 20q13 Am J Hum Genet 77 1075 1085
A Haagerup T Bjerke PO Schiotz HG Binderup R Dahl TA Kruse 2002 Asthma and atopy-a total genome scan for susceptibility genes Allergy 57 680 686
I Hansenne C Renard-Charlet R Greimers V Geenen 2006 Dendritic cell differentiation and immune tolerance to insulin-related peptides in Igf2-deficient mice J Immunol 176 4651 4657
S Hoffjan C Ober 2002 Present status on the genetic studies of asthma Curr Opin Immunol 14 709 717
TD Howard DS Postma GA Hawkins GH Koppelman SL Zheng AK Wysong DA Meyers ER Bleecker 2002 Fine mapping of an IgE-controlling gene on chromosome 2q: analysis of CTLA4 and CD28 J Allergy Clin Immunol 110 743 751
SG Johansson JO Hourihane J Bousquet C Bruijnzeel-Koomen S Dreborg T Haahtela ML Kowalski N Mygind J Ring P van Cauwenberge M van Hage-Hamsten B Wüthrich EAACI (the European Academy of Allergology and Cinical Immunology) nomenclature task force 2001 A revised nomenclature for allergy. An EAACI position statement from the EAACI nomenclature task force Allergy 56 813 824
IR Kirsch CC Morton K Nakahara P Leder 1982 Human immunoglobulin heavy chain genes map to a region of translocations in malignant B lymphocytes Science 216 301 303
A Kong NJ Cox 1997 Allele-sharing models: LOD scores and accurate linkage tests Am J Hum Genet 61 1179 1188
GH Koppelman OC Stine J Xu TD Howard SL Zheng HF Kauffman ER Bleecker DA Meyers DS Postma 2002 Genome-wide search for atopy susceptibility genes in Dutch families with asthma J Allergy Clin Immunol 109 498 506
T Kurz J Altmüller K Strauch F Rüschendorf A Heinzmann MF Moffatt WO Cookson F Inacio P Nürnberg HH Stassen KA Deichmann 2005 A genome-wide screen on the genetics of atopy in a multiethnic European population reveals a major atopy locus on chromosome 3q21.3 Allergy 60 192 199
T Laitinen MJ Daly JD Rioux P Kauppi C Laprise T Petäys T Green M Cargill T Haahtela ES Lander LA Laitinen TJ Hudson J Kere 2001 A susceptibility locus for asthma-related traits on chromosome 7 revealed by genome-wide scan in a founder population Nat Genet 28 87 91
T Laitinen A Polvi P Rydman J Vendelin V Pulkkinen P Salmikangas S Mäkelä M Rehn A Pirskanen A Rautanen M Zucchelli H Gullstén M Leino H Alenius T Petäys T Haahtela A Laitinen C Laprise TJ Hudson LA Laitinen 2004 Characterization of a common susceptibility locus for asthma-related traits Science 304 300 304
ES Lander NJ Schork 1994 Genetic dissection of complex traits Science 265 2037 2048
M Lipoldová M Svobodová M Krulová H Havelková J Badalová E Nohýnková V Holáň AA Hart P Volf P Demant 2000 Susceptibility to Leishmania major infection in mice: multiple loci and heterogeneity of immunopathological phenotypes Genes Immun 1 200 206
M Lipoldová P Demant 2006 Genetic susceptibility to infectious disease: lessons from mouse models of leishmaniasis Nat Rev Genet 7 294 305
DG Marsh JD Neely DR Breazeale B Ghosh LR Freidhoff E Ehrlich-Kautzky C Schou G Krishnaswamy TH Beaty 1994 Linkage analysis of IL4 and other chromosome 5q31.1 markers and total serum immunoglobulin E concentrations Science 264 1152 1156
JJ McIntire SE Umetsu O Akbari M Potter VK Kuchroo GS Barsh GJ Freeman DT Umetsu RH DeKruyff 2001 Identification of Tapr (an airway hyperreactivity regulatory locus) and the linked Tim gene family Nat Immunol 2 1109 1116
MF Moffatt M Kabesch L Liang AL Dixon D Strachan S Heath M Depner A von Berg A Bufe E Rietschel A Heinzmann B Simma T Frischer SA Willis-Owen KC Wong T Illig C Vogelberg SK Weiland E von Mutius GR Abecasis 2007 Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma Nature 448 470 473
R Nickel U Wahn N Hizawa N Maestri DL Duffy KC Barnes K Beyer J Forster R Bergmann F Zepp V Wahn DG Marsh 1997 Evidence for linkage of chromosome 12q15-q24.1 markers to high total serum IgE concentrations in children of the German Multicenter Allergy Study Genomics 46 159 162
C Ober A Tsalenko R Parry NJ Cox 2000 A second-generation genomewide screen for asthma-susceptibility alleles in a founder population Am J Hum Genet 67 1154 1162
C Ober S Hoffjan 2006 Asthma genetics 2006: the long and winding road to gene discovery Genes Immun 7 95 100
C Ober Z Tan Y Sun JD Possick L Pan R Nicolae S Radford RR Parry A Heinzmann KA Deichmann LA Lester JE Gern RF Lemanske Jr DL Nicolae JA Elias GL Chupp 2008 Effect of variation in CHI3L1 on serum YKL-40 level, risk of asthma, and lung function N Engl J Med 358 1682 1691
S Odom G Gomez M Kovarova Y Furumoto JJ Ryan HV Wright C Gonzalez-Espinosa ML Hibbs KW Harder J Rivera 2004 Negative regulation of immunoglobulin E-dependent allergic response by Lyn kinase J Exp Med 199 1491 1502
B Piavaux PV Jeurink PC Groot GA Hofman P Demant AJ Van Oosterhout 2007 Mouse genetic model for antigen-induced airway manifestations of asthma Genes Immun 8 28 34
BA Raby EK Silverman R Lazarus C Lange DJ Kwiatkowski ST Weiss 2003 Chromosome 12q harbors multiple genetic loci related to asthma and asthma-related phenotypes Hum Mol Genet 12 1973 1979
J Rivera A Olivera 2007 Src family kinases and lipid mediators in control of allergic inflammation Immunol Rev 217 255 268
YY Shugart C Specchia HH Li BQ Doan RA Mathias M Devoto 2001 Comparison of sib pair-based approaches for identifying quantitative trait loci underlying asthma in the Busselton families Genet Epidemiol 1 198 203
F Van Dyck J Declercq CV Braem WJ Van de Ven 2007 PLAG1, the prototype of the PLAG gene family: versatility in tumour development Int J Oncol 30 765 774
P van Eerdewegh RD Little J Dupuis RG Del Mastro K Falls J Simon D Torrey S Pandit J McKenny K Braunschweiger A Walsh Z Liu B Hayward C Folz SP Manning A Bawa L Saracino M Thackston Y Benchekroun N Capparell 2002 Association of the ADAM33 gene with asthma and bronchial hyperresponsiveness Nature 418 426 430
S Venanzi G Malerba R Galavotti MC Lauciello E Trabetti G Zanoni L Pescollderungg LC Martinati AL Boner PF Pignatti 2001 Linkage to atopy on chromosome 19 in north-eastern Italian families with allergic asthma Clin Exp Allergy 31 1220 1224
D Vercelli 2008 Discovering susceptibility genes for asthma and allergy Nat Rev Immunol 8 169 182
BT Webb E van den Oord A Akkari S Wilton T Ly R Duff KC Barnes K Carlsen J Gerritsen W Lenney M Silverman P Sly J Sundy J Tsanakas A von Berg M Whyte M Blumenthal J Vestbo L Middleton PJ Helms 2007 Quantitative linkage genome scan for atopy in a large collection of Caucasian families Hum Genet 121 83 92
PA Whittaker 2003 What is the relevance of bioinformatics to pharmacology? Trends Pharmacol Sci 24 434 439
AS Whittemore J Halpern 1994 A class of tests for linkage using affected pedigree members Biometrics 50 118 127
M Wills-Karp SL Ewart 2004 Time to draw breath: asthma-susceptibility genes are identified Nat Rev Genet 5 376 387
M Wjst G Fischer T Immervoll M Jung K Saar F Rueschendorf A Reis M Ulbrecht M Gomolka EH Weiss L Jaeger R Nickel K Richter NIM Kjellman M Griese A von Berg M Gappa F Riedel M Boehle S van Koningsbruggen 1999 A genome-wide search for linkage to asthma Genomics 58 1 8
J Xu DS Postma TD Howard GH Koppelman SL Zheng OC Stine ER Bleecker DA Meyers 2000 Major genes regulating total serum immunoglobulin E in families with asthma Am J Hum Genet 67 1163 1173
X Xu Z Fang B Wang C Chen W Guang Y Jin J Yang S Lewitzky A Aelony A Parker J Meyer ST Weiss X Xu 2001 A genome-wide search for quantitative-trait loci underlying asthma Am J Hum Genet 69 1271 1277
Y Yokouchi Y Nukaga M Shibasaki E Noguchi K Kimura S Ito M Nishihara K Yamakawa-Kobayashi K Takeda N Imoto K Ichikawa A Matsui H Hamaguchi T Arinami 2000 Significant evidence for linkage of mite-sensitive childhood asthma to chromosome 5q31-q33 near the interleukin 12 B locus by a genome-wide search in Japanese families Genomics 66 152 160
Y Yokouchi M Shibasaki E Noguchi J Nakayama T Ohtsuki M Kamioka K Yamakawa-Kobayashi S Ito K Takeda K Ichikawa Y Nukaga A Matsui H Hamaguchi T Arinami 2002 A genome-wide linkage analysis of orchard grass-sensitive childhood seasonal allergic rhinitis in Japanese families Genes Immun 3 9 13
Y Zhang NI Leaves GG Anderson CP Ponting J Broxholme R Holt P Edser S Bhattacharyya A Dunham IM Adcock L Pulleyn PJ Barnes JI Harper G Abecasis L Cardon M White J Burton L Matthews R Mott M Ross 2003 Positional cloning of a quantitative trait locus on chromosome 13q14 that influences immunoglobulin E levels and asthma Nat Genet 34 181 186
J Zhang PD Paré AJ Sandford 2008 Recent advances in asthma genetics Respir Res 9 4