A two-gene phylogeny shows the lichen genus Niebla (Lecanorales) is endemic to the New World and does not occur in Macaronesia nor in the Mediterranean basin
Sérusiaux, Emmanuël; van den Boom, Pieter; Ertz, Damien
Sérusiaux, Emmanuël ; Université de Liège - ULiège > Département des sciences et gestion de l'environnement > Taxonomie végétale et biologie de la conservation
van den Boom, Pieter
Ertz, Damien; Jardin Botanique National de Belgique
Language :
English
Title :
A two-gene phylogeny shows the lichen genus Niebla (Lecanorales) is endemic to the New World and does not occur in Macaronesia nor in the Mediterranean basin
Acharius E. Lichenographia Universalis 1810, Göttingen.
Altekar G., Aittokallio T., Huelsenbeck J.P., Ronquist F. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 2004, 20:407-415.
Aptroot A., Schumm F. Key to Ramalina species known from Atlantic islands, with two new species from the Azores. Sauteria 2008, 15:21-57.
Bendz G., Santesson J., Tibell L. Chemical studies on lichens. 2. Thin layer chromatography of aliphatic lichen acids. Acta Chemica Scandinavica 1966, 20:1181.
Bowler P.A. Cortical diversity in the Ramalinaceae. Canadian Journal of Botany 1981, 59:437-452.
Bowler P.A. New combinations in Fistulariella (Ramalinaceae). Mycotaxon 1987, 29:345-351.
Bowler P.A., Marsh J.E. Niebla. Lichens Unlimited 2004, vol. 2:368-380. Arizona State University, Tempe, Arizona. T.H. Nash, B. Ryan, P. Diederich, C. Gries, F. Bungartz (Eds.).
Bowler P.A., Rundel P.W. Synopsis of a new lichen genus, Fistulariella Bowler & Rundel (Ramalinaceae). Mycotaxon 1977, 6:195-202.
Brandt T. Beitrage zur Anatomischen Kenntnis der Flechtengattung Ramalina. Hedwigia 1906, 45:124-158.
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology & Evolution 2000, 17:540-552.
Cubero O.F., Crespo A., Fathi J., Bridge P.D. DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Plant Systematics and Evolution 1999, 216:243-249.
Culberson W.L., Culberson C.F. Asahinea, a new lichen genus in the Parmeliaceae. Brittonia 1965, 17:182-190.
Culberson W.L., Culberson C.F. The lichen genera Cetrelia and Platismatia (Parmeliaceae). Contributions of the U.S. National Herbarium 1968, 34:449-558.
Dereeper A., Guignon V., Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research 2008, 36:W465-W469.
Duclaux G. Likenoj de Okcidenta Europo: le genre Ramalina d'après G. Clauzade & C. Roux. Bulletin d'Informations de l'Association Française de Lichénologie 1998, 23:23-33.
Ekman S. Molecular phylogeny of the Bacidiaceae (Lecanorales, lichenized Ascomycota). Mycological Research 2001, 105:783-797.
Eriksson O.E., Hawksworth D.L. Outline of the ascomycetes - 1998. Systema Ascomycetum 1998, 16:83-301.
Gardes M., Bruns T.D. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 1993, 2:113-118.
Gueidan C., Savic S., Thüs H., Roux C., Keller C., Tibell L., Prieto M., Hei∂marsson S., Bruess O., Orange A., Amtoft W., Navarro-Rosinés P., Krzewicka B., Pykälä J., Grube M., Lutzoni F. Generic classification of the Verruacariaceae (Ascomycota) based on molecular and morphological evidence: recent progress and remaining challenges. Taxon 2009, 58:184-208.
Hafellner J., Mayrhofer H., Poelt J. Die Gattungen der Flechtenfamilie Physciaceae. Herzogia 1979, 5:39-79.
Hale M.E. Pseudocyphellae and pored epicortex in the Parmeliaceae: their delimitation and evolutionary significance. Lichenologist 1981, 13:1-10.
Högnabba F., Stenroos S., Thell A. Phylogenetic relationships and evolution of photobiont associations in the Lobariaceae (Peltigerales, Lecanoromycetes, Ascomycota). Bibliotheca Lichenologica 2009, 100:157-187.
Kashiwadani H., Nash T.H. Ramalina. Lichens Unlimited 2004, vol. 2:440-455. Arizona State University, Tempe, Arizona. T.H. Nash, B.D. Ryan, P. Diederich, C. Gries, F. Bungartz (Eds.).
Keuck G. Die systematische Stellung der Ramalinaceae. Berichte der Deutschen Botanischen Gesellschaft 1979, 92:507-518.
Krog H., James P.W. The genus Ramalina in Fennoscandia and the British Isles. Norwegian Journal of Botany 1977, 24:15-43.
Krog H., Østhagen H. The genus Ramalina in the Canary Islands. Norwegian Journal of Botany 1980, 27:255-296.
LaGreca S., Lumbsch H.T. No evidence from rDNA ITS sequence data for a placement of Ramalinora in the Ramalinaceae. Lichenologist 2001, 33:172-176.
Lumbsch H.T., Rambold G., Elix J.A. Ramalinora (Ramalinaceae) - a new lichen genus from Australia. Australian Systematic Botany 1995, 8:521-530.
Maddison D., Maddison W. MacClade Version 4.03PPC: analysis of phylogeny and character evolution 2002, Sinauer Associates, Sunderland, Massachusetts, USA.
Miadlikowska J., Kauff F., Hofstetter V., Fraker E., Grube M., Hafellner J., Reeb V., Hodkinson B.P., Kukwa M., Lücking R., Hestmark G., Otalora M.G., Rauhut A., Büdel B., Scheidegger C., Timdal E., Stenroos S., Brodo I.M., Perlmutter G.B., Ertz D., Diederich P., Lendemer J.C., May P.F., Schoch C., Arnold A.E., Gueidan C., Tripp E., Yahr R., Robertson C., Lutzoni F. New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes. Mycologia 2006, 98:1088-1103.
Moberg R. The lichen genus Physcia and allied genera in Fennoscandia. Symbolae Botanicae Upsalienses 1977, 22:1-108.
Lichen Flora of the Greater Sonoran Desert Region. Lichens Unlimited 2002, 532. Arizona State University, Tempe, Arizona. T.H. Nash, B.D. Ryan, C. Gries, F. Bungartz (Eds.).
Lichen Flora of the Greater Sonoran Desert Region. Lichens Unlimited 2004, 742. Arizona State University, Tempe, Arizona. T.H. Nash, B.D. Ryan, P. Diederich, C. Gries, F. Bungartz (Eds.).
Nimis P.L., Martellos S. A Second Checklist of the Lichens of Italy with a Thesaurus of Synonyms 2003, Monografie del Museo Regionale di Scienze Naturali, 4, Museo Regionale di Scienze Naturali Saint-Pierre, Valle d'Aosta, Aosta, 192 pp.
Nylander J.A.A. MrModeltest-version 2 2004, Available from the author (Evolutionary Biology Centre, Uppsala University). http://www.ebc.uu.se/systzoo/staff/nylander.html.
Orange A., James P.W., White F.J. Microchemical Methods for the Identification of Lichens 2001, British Lichen Society, 101 pp.
Øvstedal D.O., Lewis Smith R.I. Lichens of Antarctica and South Georgia. A Guide to their Identification and Ecology. Studies in Polar Research 2001, Cambridge University Press, 411 pp.
Poelt J. Zur Systematik der Flechtenfamilie Physciaceae. Nova Hedwigia 1965, 9:21-32.
Posada D., Buckley T. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology 2004, 53:793-808.
Rambaut A. FigTree v1.2.3. 2009, Available from:. http://tree.bio.ed.ac.uk/software/figtree/.
Rambaut A., Drummond A.J. Tracer v1.4. 2007, Available from:. http://beast.bio.ed.ac.uk/Tracer.
Reese Næsborg R., Ekman S., Tibell L. Molecular phylogeny of the genus Lecania (Ramalinaceae, lichenized Ascomycota). Mycological Research 2007, 111:581-591.
Rodríguez F., Oliver J.L., Marín A., Medina J.R. The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 1990, 142:485-501.
Rundel P.W., Bowler P.A. Niebla, a new generic name for the lichen genus Desmazieria (Ramalinaceae). Mycotaxon 1978, 6:497-499.
Schoch C.L., Sung G.H., López-Giráldez F., Townsend J.P., Miadlikowska J., Hofstetter V., Robbertse B., Matheny P.B., Kauff F., Wang Z., Gueidan C., Andrie R.M., Trippe K., Ciufetti L.M., Wynns A., Fraker E., Hodkinson B.P., Bonito G., Groenewald J.Z., Arzanlou M., de Hoog G.S., Crous P.W., Hewitt D., Pfister D.H., Peterson K., Gryzenhout M., Wingfield M.J., Aptroot A., Suh S.O., Blackwell M., Hillis D.M., Griffith G.W., Castlebury L.A., Rossman A.Y., Lumbsch H.T., Lücking R., Büdel B., Rauhut A., Diederich P., Ertz D., Geiser D.M., Hosaka K., Inderbitzin P., Kohlmeyer J., Volkmann-Kohlmeyer B., Mostert L., O'Donnell K., Sipman H., Rogers J.D., Shoemaker R.A., Sugiyama J., Summerbell R.C., Untereiner W., Johnston P.R., Stenroos S., Zuccaro A., Dyer P.S., Crittenden P.D., Cole M.S., Hansen K., Trappe J.M., Yahr R., Lutzoni F., Spatafora J.W. The ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Systematic Biology 2009, 58:224-239.
Schwendener S, 1867. Uber den Bau des Flechtenthallus. Verhandlungen der Schweizerischen Naturforschenden Gesellschaft, Rheinfelden, Aarau, 88.
Smith C.W., Aptroot A., Coppins B.J., Flechter A., Gilbert O.L., James P.W., Wolseley P.A. The Lichens of Great Britain and Ireland 2009, The British Lichen Society and The Natural History Museum, 1046 p.
Speerschneider J. Mikroskopisch anatomische Untersuchung uber Ramalina calicaris F.U. deren Varietaten fraxinea, fastigiata, canaliculata und farinacea. Botanische Zeitung (Berlin) 1855, 13. 345-354, 361-369, 377-385.
Spjut R.W. Vermilacinia (Ramalinaceae, Lecanorales), a new genus of lichens. Flechten Follmann. Contributions to lichenology in Honour of Gerhard Follmann. Geobotanical and Phytotaxonomical Study Group, Botanical Institute 1995, 337-351. University of Cologne, Cologne. F.J.A. Daniëls, M. Schulz, J. Peine (Eds.).
Spjut R.W. Niebla and Vermilacinia (Ramalinaceae) from California and Baja California. Sida, Botanical Miscellany 1996, 14:1-208.
Stizenberger J. II. Bemerkungen zu den Ramalina-Arten Europa's. Jahresbericht der Naturforschenden Gesellschaft Graubündens 1891, 34:77-130.
Swofford D.L. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4 2002, Sinauer Associates, Sunderland, Massachusetts.
Tehler A., Irestedt M. Parallel evolution of lichen growth forms in the family Roccellaceae (Arthoniales, Ascomycota). Cladistics 2007, 23:432-454.
van den Boom P.P.G., Etayo J. New records of lichens and lichenicolous fungi from Fuerteventura (Canary Islands), with descriptions of some new species. Cryptogamie, Mycologie 2006, 27:341-374.
White T.J., Bruns T., Lee S., Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press, Inc., New York. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
Wirth V., Heklau M. Zonierung der Gesteinsflechtenvegetation an küstennahen Bergzügen der Namib-Wüste. Carolinea 2006, 64:79-96.
Zwickl DJ, 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.