Article (Scientific journals)
Computational Study Of Lipid-Destabilizing Protein Fragments: Towards A Comprehensive View Of Tilted Peptides
Lins, Laurence; Charloteaux, Benoît; Thomas, Annick et al.
2001In Proteins, 44 (4), p. 435-447
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Abstract :
[en] Tilted peptides are short sequence fragments (10-20 residues long) that possess an asymmetric hydrophobicity gradient along their sequence when they are helical. Due to this gradient, they adopt a tilted orientation towards a single lipid/water interface and destabilize the lipids. We have detected those peptides in many different proteins with various functions. While being all tilted-oriented at a single lipid/water interface, no consensus sequence can be evidenced. In order to better understand the relationships between their lipid-destabilizing activity and their properties, we used IMPALA to classify the tilted peptides. This method allows the study of interactions between a peptide and a modeled lipid bilayer using simple restraint functions designed to mimic some of the membrane properties. We predict that tilted peptides have access to a wide conformational space in membranes, in contrast to transmembrane and amphipathic helices. In agreement with previous studies, we suggest that those metastable configurations could lead to the perturbation of the acyl chains organization and could be a general mechanism for lipid destabilization. Our results further suggest that tilted peptides fall into two classes: those from proteins acting on membrane behave differently than destabilizing fragments from interfacial proteins. While the former have equal access to the two layers of the membrane, the latter are confined within a single lipid layer. This could be in relation with the organization of lipid substrate on which the peptides physiologically act.
Disciplines :
Biochemistry, biophysics & molecular biology
Author, co-author :
Lins, Laurence  ;  Université de Liège - ULiège > Gembloux Agro-Bio Tech
Charloteaux, Benoît ;  Université de Liège - ULiège > Gembloux Agro-Bio Tech
Thomas, Annick ;  Université de Liège - ULiège > Chimie et bio-industries > Centre de Bio. Fond. - Section de Biologie moléc. et numér.
Brasseur, Robert ;  Université de Liège - ULiège > Gembloux Agro-Bio Tech
Language :
English
Title :
Computational Study Of Lipid-Destabilizing Protein Fragments: Towards A Comprehensive View Of Tilted Peptides
Publication date :
2001
Journal title :
Proteins
ISSN :
0887-3585
eISSN :
1097-0134
Publisher :
Wiley-Liss Inc, United States - New York
Volume :
44
Issue :
4
Pages :
435-447
435-47
Peer reviewed :
Peer Reviewed verified by ORBi
Available on ORBi :
since 24 June 2010

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