  | Crowet, J.-M., Lins, L., Deshayes, S., Divita, G., Morris, M., Brasseur, R., & Thomas, A. (2012). Modeling of non-covalent complexes of the cell-penetrating peptide CADY and its siRNA cargo. Biochimica et Biophysica Acta. doi:10.1016/j.bbamem.2012.09.006  Peer Reviewed verified by ORBi |
| Beaufays, J.* , Lins, L.* , Thomas, A., & Brasseur, R. (2012). In silico predictions of 3D structures of linear and cyclic peptides with natural and non-proteinogenic residues. Journal of Peptide Science, 18 (1), 17-24. doi:10.1002/psc.1410 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
Beaufays, J., Lins, L., Crowet, J.-M., Thomas, A., & Brasseur, R. (February 2011). Peplook, an efficient tool to predict conformation: application to cyclic peptides containing or not non natural residues. Paper presented at 36th Lorne Conference on Protein Structure and Function 2011/Mantra Erskine, Lorne, Australia. |
| Thomas, A., Lins, L., Divita, G., & Brasseur, R. (2010). Realistic modeling approaches of structure-function properties of CPPs in non-covalent complexes. Biochimica et Biophysica Acta. doi:10.1016/j.bbamem.2010.02.020 Peer Reviewed verified by ORBi |
| Thomas, A., Joris, B., & Brasseur, R. (2010). Standardized evaluation of protein stability. Biochimica et Biophysica Acta. doi:10.1016/j.bbapap.2010.02.008 Peer Reviewed verified by ORBi |
| Epand, R. M., Thomas, A., Brasseur, R., & Epand, R. F. (2010). Cholesterol interaction with proteins that partition into membrane domains: an overview. Sub Cellular Biochemistry, 51, 253-78. doi:10.1007/978-90-481-8622-8_9 Peer Reviewed verified by ORBi |
| Konate, K., Crombez, L., Deshayes, S., Decaffmeyer, M., Thomas, A., Brasseur, R., Aldrian, G., Heitz, F., & Divita, G. (2010). Insight into the cellular uptake mechanism of a secondary amphipathic cell penetrating peptide for siRNA delivery. Biochemistry. doi:10.1021/bi901791x Peer Reviewed verified by ORBi |
| Santini, S., Crowet, J.-M., Thomas, A., Paquot, M., Vandenbol, M., Thonart, P., Wathelet, J.-P., Blecker, C., Lognay, G., Brasseur, R., Lins, L., & Charloteaux, B. (June 2009). Study of thermomyces ianuginosa lipase in the presence of tributyrylglycerol and water. Biophysical Journal, 96 (12), 4814-4825. doi:10.1016/j.bpj.2009.03.040 Peer Reviewed verified by ORBi |
| Aguedo, M., Giet, J.-M., Hanon, E., Danthine, S., Paquot, M., Lognay, G., Thomas, A., Vandenbol, M., Thonart, P., Blecker, C., & Wathelet, J.-P. (2009). Interesterification of rapeseed oil with anhydrous milk fat and its stearin fraction. Poster session presented at GCIRC Canola/Rapeseed TEchnical meeting, Delhi, India. |
| Aguedo, M., Hanon, E., Danthine, S., Paquot, M., Lognay, G., Thomas, A., Vandenbol, M., Thonart, P., Wathelet, J.-P., & Blecker, C. (2009). Enrichment of Anhydrous Milk Fat in Polyunsatured Fatty Acid Residues. Poster session presented at 100h AOCS Meeting and Expo, Orlando, United States. Peer reviewed |
| Giet, J.-M., Aguedo, M., Hanon, E., Danthine, S., Paquot, M., Lognay, G., Thomas, A., Vandenbol, M., Thonart, P., Wathelet, J.-P., & Blecker, C. (2009). Interesterification of rapeseed oil with anhydrous milk fat and its stearin fraction. Poster session presented at GCIRC Canola/Rapeseed Technical meeting, Delhi, India. |
| Thomas, A., Deshayes, S., Decaffmeyer, M., Van Eyck, M.-H., Charloteaux, B., Brasseur, R., Escher, E., & Lubell, W. D. (2009). PepLook: An innovative in silico tool for determination of structure, polymorphism and stability of peptides. Advances in Experimental Medicine and Biology, 611, 459-460. doi:10.1007/978-0-387-73657-0_198 Peer Reviewed verified by ORBi |
| Kerfelec, B., Allouche, M., Colin, D., Van Eyck, M.-H., Brasseur, R., & Thomas, A. (2008). Computational Study Of Colipase Interaction With Lipid Droplets And Bile Salt Micelles. Proteins, 73 (4), 828-838. doi:10.1002/prot.22109 Peer Reviewed verified by ORBi |
 | Decaffmeyer, M., Thomas, A., & Brasseur, R. (2008). Peptides As Drugs: Myth Or Reality? Biotechnologie, Agronomie, Société et Environnement, 12 (1), 81-88. Peer Reviewed verified by ORBi |
| Vishwanathan, S., Thomas, A., Brasseur, R., Epand, R., Hunter, E., & Epand, R. (2008). Hydrophobic Substitutions In The First Residue Of The Crac Segment Of The Gp41 Protein Of Hiv. Biochemistry, 47 (1), 124-130. doi:10.1021/bi7018892 Peer Reviewed verified by ORBi |
| Deshayes, S., Decaffmeyer, M., Brasseur, R., & Thomas, A. (2008). Structural Polymorphism Of Two Cpp: An Important Parameter Of Activity. Biochimica et Biophysica Acta. Biomembranes, 1778 (5), 1197-1205. doi:10.1016/j.bbamem.2008.01.027 Peer Reviewed verified by ORBi |
| Decaffmeyer, M., Shulga, Y., Dicu, A., Thomas, A., Truant, R., Topham, M., Brasseur, R., & Epand, R. (2008). Determination Of The Topology Of The Hydrophobic Segment Of Mammalian Diacylglycerol Kinase Epsilon In A Cell Membrane And Its Relationship To Predictions From Modeling. Journal of Molecular Biology, 383 (4), 797-809. doi:10.1016/j.jmb.2008.08.076 Peer Reviewed verified by ORBi |
| Vishwanathan, S., Thomas, A., Brasseur, R., Epand, R., Hunter, E., & Epand, R. (2008). Large Changes In The Crac Segment Of Gp41 Of Hiv Do Not Destroy Fusion Activity If The Segment Interacts With Cholesterol. Biochemistry, 47 (45), 11869-11876. doi:10.1021/bi8014828 Peer Reviewed verified by ORBi |
| Lins, L., Decaffmeyer, M., Thomas, A., & Brasseur, R. (2008). Relationships between the orientation and the structural properties of peptides and their membrane interactions. Biochimica et Biophysica Acta, 1778 (7-8), 1537-44. doi:10.1016/j.bbamem.2008.04.006 Peer Reviewed verified by ORBi |
| Aguedo, M., Hanon, E., Danthine, S., Paquot, M., Lognay, G., Thomas, A., Vandenbol, M., Thonart, P., Wathelet, J.-P., & Blecker, C. (2007). Enrichment of anhydrous milk fat in polyunsatured fatty acid residues from linseed and rapeseed oil through enzymatic interesterification. Poster session presented at Bioforum, Liège, Belgium. |
| Lorin, A., Charloteaux, B., Fridmann-Sirkis, Y., Thomas, A., Shai, Y., & Brasseur, R. (2007). Mode Of Membrane Interaction And Fusogenic Properties Of A De Novo Transmembrane Model Peptide Depend On The Length Of The Hydrophobic Core. Journal of Biological Chemistry, 282 (25), 18388-18396. doi:10.1074/jbc.M700099200 Peer Reviewed verified by ORBi |
| Lins, L., El Kirat, K., Charloteaux, B., Flore, C., Stroobant, V., Thomas, A., Dufrene, Y., & Brasseur, R. (2007). Lipid-Destabilizing Properties Of The Hydrophobic Helices H8 And H9 From Colicin E1. Molecular Membrane Biology, 24 (5-6), 419-430. doi:10.1080/09687860701228254 Peer Reviewed verified by ORBi |
| Bizimungu, C., Thomas, A., Brasseur, R., & Vandenbol, M. (2007). Mutational Analysis Of The Tre2 Oncogene Encoding An Inactive Rabgap. Biotechnology Letters, 29 (12), 1927-1937. doi:10.1007/s10529-007-9475-6 Peer Reviewed verified by ORBi |
| Charloteaux, B., Lorin, A., Crowet, J.-M., Stroobant, V., Lins, L., Thomas, A., & Brasseur, R. (2006). The N-terminal 12 residue long peptide of HIV gp41 is the minimal peptide sufficient to induce significant T-cell-like membrane destabilization in vitro. Journal of Molecular Biology, 359 (3), 597-609. doi:10.1016/j.jmb.2006.04.018 Peer Reviewed verified by ORBi |
| Lorin, A., Thomas, A., Stroobant, V., Brasseur, R., & Lins, L. (2006). Lipid-Destabilising Properties Of A Peptide With Structural Plasticity. Chemistry and Physics of Lipids, 141 (1-2), 185-196. doi:10.1016/j.chemphyslip.2006.02.019 Peer Reviewed verified by ORBi |
| Decreux, A., Thomas, A., Spies, B., Brasseur, R., Van Cutsem, P., & Messiaen, J. (2006). In Vitro Characterization Of The Homogalacturonan-Binding Domain Of The Wall-Associated Kinase Wak1 Using Site-Directed Mutagenesis. Phytochemistry, 67 (11), 1068-1079. doi:10.1016/j.phytochem.2006.03.009 Peer Reviewed verified by ORBi |
| Thomas, A., Deshayes, S., Decaffmeyer, M., Van Eyck, M., Charloteaux, B., & Brasseur, R. (2006). Prediction Of Peptide Structure: How Far Are We? Proteins, 65 (4), 889-897. doi:10.1002/prot.21151 Peer Reviewed verified by ORBi |
| Lins, L., Charloteaux, B., Heinen, C., Thomas, A., & Brasseur, R. (2006). "De novo" design of peptides with specific lipid-binding properties. Biophysical Journal, 90 (2), 470-479. doi:10.1529/biophysj.105.068213 Peer Reviewed verified by ORBi |
| Dahimene, S., Alcolea, S., Naud, P., Jourdon, P., Escande, D., Brasseur, R., Thomas, A., Baro, I., & Merot, J. (2006). The N-Terminal Juxtamembranous Domain Of Kcnq1 Is Critical For Channel Surface Expression - Implications In The Romano-Ward Lqt1 Syndrome. Circulation Research, 99 (10), 1076-1083. doi:10.1161/01.RES.0000250262.12219.95 Peer Reviewed verified by ORBi |
| Decaffmeyer, M., Lins, L., Charloteaux, B., Vaneyck, M., Thomas, A., & Brasseur, R. (2006). Rational Design Of Complementary Peptides To The Beta Amyloid 29-42 Fusion Peptide: An Application Of Pepdesign. Biochimica et Biophysica Acta. Biomembranes, 1758 (3), 320-327. doi:10.1016/j.bbamem.2005.10.001 Peer Reviewed verified by ORBi |
| Epand, R., Thomas, A., Brasseur, R., Vishwanathan, S., Hunter, E., & Epand, R. (2006). Juxtamembrane Protein Segments That Contribute To Recruitment Of Cholesterol Into Domains. Biochemistry, 45 (19), 6105-6114. doi:10.1021/bi060245+ Peer Reviewed verified by ORBi |
| Lejeune, D., Delsaux, N., Charloteaux, B., Thomas, A., & Brasseur, R. (2005). Protein-Nucleic Acid Recognition: Statistical Analysis Of Atomic Interactions And Influence Of Dna Structure. Proteins, 61 (2), 258-271. doi:10.1002/prot.20607 Peer Reviewed verified by ORBi |
| Thomas, A., Allouche, M., Basyn, F., Brasseur, R., & Kerfelec, B. (2005). Role Of The Lid Hydrophobicity Pattern In Pancreatic Lipase Activity. Journal of Biological Chemistry, 280 (48), 40074-40083. doi:10.1074/jbc.M502123200 Peer Reviewed verified by ORBi |
| Ravault, S., Soubias, O., Saurel, O., Thomas, A., Brasseur, R., & Milon, A. (2005). Fusogenic Alzheimer'S Peptide Fragment A Beta (29-42) In Interaction With Lipid Bilayers: Secondary Structure, Dynamics, And Specific Interaction With Phosphatidyl Ethanolamine Polar Heads As Revealed By Solid-State Nmr. Protein Science: A Publication of the Protein Society, 14 (5), 1181-1189. doi:10.1110/ps.041291405 Peer Reviewed verified by ORBi |
| Adam, B., Lins, L., Stroobant, V., Thomas, A., & Brasseur, R. (2004). Distribution Of Hydrophobic Residues Is Crucial For The Fusogenic Properties Of The Ebola Virus Gp2 Fusion Peptide. Journal of Virology, 78 (4), 2131-2136. doi:10.1128/JVI.78.4.2131-2136.2004 Peer Reviewed verified by ORBi |
| Thomas, A., Milon, A., & Brasseur, R. (2004). Partial Atomic Charges Of Amino Acids In Proteins. Proteins, 56 (1), 102-109. doi:10.1002/prot.20093 Peer Reviewed verified by ORBi |
| Meurisse, R., Brasseur, R., & Thomas, A. (2004). Aromatic Side-Chain Interactions In Proteins: Near- And Far-Sequence Tyr-X Pairs. Proteins, 54 (3), 478-490. doi:10.1002/prot.10582 Peer Reviewed verified by ORBi |
| Mingeot-Leclercq, M.-P., Lins, L., Bensliman, M., Thomas, A., Van Bambeke, F., Peuvot, J., Schanck, A., & Brasseur, R. (2003). Piracetam Inhibits The Lipid-Destabilising Effect Of The Amyloid Peptide A Beta C-Terminal Fragment. Biochimica et Biophysica Acta. Biomembranes, 1609 (1), 28-38. doi:10.1016/S0005-2736(02)00654-5 Peer Reviewed verified by ORBi |
| Meurisse, R., Brasseur, R., & Thomas, A. (2003). Aromatic Side-Chain Interactions In Proteins. Near- And Far-Sequence His-X Pairs. Biochimica et Biophysica Acta - Proteins and Proteomics, 1649 (1), 85-96. doi:10.1016/S1570-9639(03)00161-4 Peer Reviewed verified by ORBi |
| Basyn, F., Spies, B., Bouffioux, O., Thomas, A., & Brasseur, R. (2003). Insertion Of X-Ray Structures Of Proteins In Membranes. Journal of Molecular Graphics and Modelling, 22 (1), 11-21. doi:10.1016/S1093-3263(03)00122-0 Peer Reviewed verified by ORBi |
| Ho, B., Thomas, A., & Brasseur, R. (2003). Revisiting The Ramachandran Plot: Hard-Sphere Repulsion, Electrostatics, And H-Bonding In The Alpha-Helix. Protein Science: A Publication of the Protein Society, 12 (11), 2508-2522. doi:10.1110/ps.03235203 Peer Reviewed verified by ORBi |
| Lins, L., Thomas, A., & Brasseur, R. (2003). Analysis Of Accessible Surface Of Residues In Proteins. Protein Science: A Publication of the Protein Society, 12 (7), 1406-1417. doi:10.1110/ps.0304803 Peer Reviewed verified by ORBi |
| Lins, L., Flore, C., Chapelle, L., Talmud, P., Thomas, A., & Brasseur, R. (2002). Lipid-Interacting Properties Of The N-Terminal Domain Of Human Apolipoprotein C-III. Protein Engineering, 15 (6), 513-520. doi:10.1093/protein/15.6.513 Peer Reviewed verified by ORBi |
| Thomas, A., Meurisse, R., Charloteaux, B., & Brasseur, R. (2002). Aromatic Side-Chain Interactions In Proteins. I. Main Structural Features. Proteins, 48 (4), 628-634. doi:10.1002/prot.10190 Peer Reviewed verified by ORBi |
| Thomas, A., Meurisse, R., & Brasseur, R. (2002). Aromatic Side-Chain Interactions In Proteins. II. Near- And Far-Sequence Phe-X Pairs. Proteins, 48 (4), 635-644. doi:10.1002/prot.10191 Peer Reviewed verified by ORBi |
| Swinnen, M., Thomas, A., & Brasseur, R. (2002). Fcpac: Fast Calculation Of Partial Atomic Charges Using Strictly Localized Molecular Orbitals. Computational Materials Science, 25 (4), 590-595. doi:10.1016/S0927-0256(02)00339-7 Peer Reviewed verified by ORBi |
| Thomas, A., Bouffioux, O., Geeurickx, D., & Brasseur, R. (2001). Pex, Analytical Tools For Pdb Files. I. Gf-Pex: Basic File To Describe A Protein. Proteins, 43 (1), 28-36. doi:10.1002/1097-0134(20010401)43:1<28::AID-PROT1014>3.0.CO;2-M Peer Reviewed verified by ORBi |
| Lins, L., Charloteaux, B., Thomas, A., & Brasseur, R. (2001). Computational Study Of Lipid-Destabilizing Protein Fragments: Towards A Comprehensive View Of Tilted Peptides. Proteins, 44 (4), 435-447. doi:10.1002/prot.1109 Peer Reviewed verified by ORBi |
| Festy, F., Robert, J., Brasseur, R., & Thomas, A. (2001). Interaction Between The N-Terminal Domain Of Gastric H,K-Atpase And The Spectrin Binding Domain Of Ankyrin Iii. Journal of Biological Chemistry, 276 (11), 7721-7726. doi:10.1074/jbc.M009980200 Peer Reviewed verified by ORBi |
| Thomas, A., Benhabiles, N., Meurisse, R., Ngwabije, R., & Brasseur, R. (2001). Pex, Analytical Tools For Pdb Files. II. H-Pex: Noncanonical H-Bonds In Alpha-Helices. Proteins, 43 (1), 37-44. doi:10.1002/1097-0134(20010401)43:1<37::AID-PROT1015>3.0.CO;2-L Peer Reviewed verified by ORBi |
| Lins, L., Couvineau, A., Rouyer-Fessard, C., Nicole, P., Maoret, J., Benhamed, M., Brasseur, R., Thomas, A., & Laburthe, M. (2001). The Human Vpac(1) Receptor - Three-Dimensional Model And Mutagenesis Of The N-Terminal Domain. Journal of Biological Chemistry, 276 (13), 10153-10160. doi:10.1074/jbc.M009730200 Peer Reviewed verified by ORBi |
| Festy, F., Lins, L., Peranzi, G., Octave, J., Brasseur, R., & Thomas, A. (2001). Is Aggregation Of Beta-Amyloid Peptides A Mis-Functioning Of A Current Interaction Process? Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology, 1546 (2), 356-364. doi:10.1016/S0167-4838(01)00158-3 Peer Reviewed verified by ORBi |
| Basyn, F., Charloteaux, B., Thomas, A., & Brasseur, R. (2001). Prediction Of Membrane Protein Orientation In Lipid Bilayers: A Theoretical Approach. Journal of Molecular Graphics and Modelling, 20 (3), 235-244. doi:10.1016/S1093-3263(01)00114-0 Peer Reviewed verified by ORBi |
Lins, L., Thomas, A., & Brasseur, R. (April 2000). Tilted peptides : structural motives involved in protein function. Paper presented at Belgian Bioinformatics Conference, Bruxelles, Belgium. |
| Nicole, P., Lins, L., Rouyer-Fessard, C., Drouot, C., Fulcrand, P., Thomas, A., Couvineau, A., Martinez, J., Brasseur, R., & Laburthe, M. (2000). Identification Of Key Residues For Interaction Of Vasoactive Intestinal Peptide With Human Vpac(1) And Vpac(2) Receptors And Development Of A Highly Selective Vpac(1) Receptor Agonist - Alanine Scanning And Molecular Modeling Of The Peptide. Journal of Biological Chemistry, 275 (31), 24003-24012. doi:10.1074/jbc.M002325200 Peer Reviewed verified by ORBi |
| Gallet, X., Charloteaux, B., Thomas, A., & Brasseur, R. (2000). A Fast Method To Predict Protein Interaction Sites From Sequences. Journal of Molecular Biology, 302 (4), 917-926. doi:10.1006/jmbi.2000.4092 Peer Reviewed verified by ORBi |
| Ducarme, P., Thomas, A., & Brasseur, R. (2000). The Optimisation Of The Helix/Helix Interaction Of A Transmembrane Dimer Is Improved By The Impala Restraint Field. Biochimica et Biophysica Acta. Biomembranes, 1509 (1-2), 148-154. doi:10.1016/S0005-2736(00)00290-X Peer Reviewed verified by ORBi |
Lins, L., Couvineau, A., Laburthe, M., Brasseur, R., & Thomas, A. (January 1999). Proposition d’un modèle 3D partiel du site de liaison du VIP sur le récepteur VPAC1. Paper presented at CECED, Bruxelles, Belgium. |
Lins, L., Couvineau, A., Laburthe, M., Brasseur, R., & Thomas, A. (January 1999). Proposition d’un modèle 3D partiel du site de liaison du VIP sur le récepteur VPAC1. Paper presented at Groupe Français des Peptides et Protéines, Aussois, France. |
| Lins, L., Thomas, A., Pillot, T., Vandekerckhove, J., Rosseneu, M., & Brasseur, R. (1999). Molecular Determinants Of The Interaction Between The C-Terminal Domain Of Alzheimer'S Beta-Amyloid Peptide And Apolipoprotein E Alpha-Helices. Journal of Neurochemistry, 73 (2), 758-769. doi:10.1046/j.1471-4159.1999.0730758.x Peer Reviewed verified by ORBi |
| Van Eyck, M., Ducarme, P., Benhabiles, N., Thomas, A., & Brasseur, R. (1999). The Solvation Concept Approached By Lipophily. Analusis, 27 (1), 6-14. doi:10.1051/analusis:1999270006 Peer reviewed |
| Bertin, P., Benhabiles, N., Krin, E., Laurent-Winter, C., Tendeng, C., Turlin, E., Thomas, A., Danchin, A., & Brasseur, R. (1999). The Structural And Functional Organization Of H-Ns-Like Proteins Is Evolutionarily Conserved In Gram-Negative Bacteria. Molecular Microbiology, 31 (1), 319-329. doi:10.1046/j.1365-2958.1999.01176.x Peer Reviewed verified by ORBi |
| Festy, F., Lins, L., Gallet, X., Robert, J., & Thomas, A. (1998). 1-anilino-8-naphtalene sulfonate probes a gastric HK-ATPase potassium site whose access requires ionophores. Journal of Membrane Biology, 165 (2), 153-60. doi:10.1007/s002329900429 Peer Reviewed verified by ORBi |
| Benhabiles, N., Gallet, X., Thomas, A., & Brasseur, R. (1998). A Descriptive Analysis Of Populations Of Three-Dimensional Structures Calculated From Primary Sequences Of Proteins By Osiris. Journal of Computational Biology, 5 (2), 351-366. doi:10.1089/cmb.1998.5.351 Peer Reviewed verified by ORBi |
| Irnaten, M., Gallet, X., Festy, F., Peranzi, G., Robert, J., Thomas, A., & Brasseur, R. (1998). Prediction Of Epitopes And Production Of Monoclonal Antibodies Against Gastric H,K-Atpase. Protein Engineering, 11 (10), 949-955. doi:10.1093/protein/11.10.949 Peer Reviewed verified by ORBi |
| Gallet, X., Festy, F., Ducarme, P., Brasseur, R., & Thomas, A. (1998). Topological Model Of Membrane Domain Of The Cystic Fibrosis Transmembrane Conductance Regulator. Journal of Molecular Graphics and Modelling, 16 (2), 72. doi:10.1016/S1093-3263(98)00015-1 Peer Reviewed verified by ORBi |
| Rahman, M., Lins, L., Thomas, A., & Brasseur, R. (1997). Are Amphipathic Asymmetric Peptides Ubiquitous Structures For Membrane Destabilisation? Journal of Molecular Modeling, 3 (5), 203-215. doi:10.1007/s008940050032 Peer Reviewed verified by ORBi |
| Gallet, X., Benhabiles, N., Lewin, M., Brasseur, R., & Thomas, A. (1995). Prediction Of The Antigenic Sites Of The Cystic-Fibrosis Transmembrane Conductance Regulator Protein By Molecular Modeling. Protein Engineering, 8 (8), 829-834. doi:10.1093/protein/8.8.829 Peer Reviewed verified by ORBi |