Evaluation of the epidemiological relevance of variable-number tandem-repeat genotyping of Mycobacterium bovis and comparison of the method with IS6110 restriction fragment lenght polymorphism analysis and spoligotyping
Allix, C.; Walravens, K.; Saegerman, Claudeet al.
2006 • In Journal of Clinical Microbiology, 44 (6), p. 1951-1962
Saegerman, Claude ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires > Epidémiologie et analyse des risques appl. aux sc. vétér.
Godfroid, J.
Supply, P.
Fauville-Dufaux, M.
Language :
English
Title :
Evaluation of the epidemiological relevance of variable-number tandem-repeat genotyping of Mycobacterium bovis and comparison of the method with IS6110 restriction fragment lenght polymorphism analysis and spoligotyping
Publication date :
2006
Journal title :
Journal of Clinical Microbiology
ISSN :
0095-1137
eISSN :
1098-660X
Publisher :
American Society for Microbiology (ASM), Washington, United States - District of Columbia
Alito, A., N. Morcillo, S. Scipioni, A. Dolmann, M. I. Romano, A. Cataldi, and D. van Soolingen. 1999. The IS6110 restriction fragment length polymorphism in particular multidrug-resistant Mycobacterium tuberculosis strains may evolve too fast for reliable use in outbreak investigation. J. Clin. Microbiol. 37:788-791.
Allix, C., P. Supply, and M. Fauville-Dufaux. 2004. Utility of fast mycobacterial interspersed repetitive unit-variable number tandem repeat genotyping in clinical mycobacteriological analysis. Clin. Infect. Dis. 39:783-789.
Ayele, W. Y., S. D. Neill, J. Zinsstag, M. G. Weiss, and I. Pavlik. 2004. Bovine tuberculosis: an old disease but a new threat to Africa. Int. J. Tuberc. Lung Dis. 8:924-937.
Brosch, R., S. V. Gordon, M. Marmiesse, P. Brodin, C. Buchrieser, K. Eiglmeier, T. Garnier, C. Gutierrez, G. Hewinson, K. Kremer, L. M. Parsons, A. S. Pym, S. Samper, D. van Soolingen, and S. T. Cole. 2002. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc. Natl. Acad. Sci. USA 99:3684-3689.
Cosivi, O., J. M. Grange, C. J. Daborn, M. C. Raviglione, T. Fujikura, D. Cousins, R. A. Robinson, H. F. Huchzermeyer, I. de Kantor, and F. X. Meslin. 1998. Zoonotic tuberculosis due to Mycobacterium bovis in developing countries. Emerg. Infect. Dis. 4:59-70.
Cousins, D. V., and D. J. Dawson. 1999. Tuberculosis due to Mycobacterium bovis in the Australian population: cases recorded during 1970-1994. Int. J. Tuberc. Lung Dis. 3:715-721.
Cowan, L. S., and J. T. Crawford. 2002. Genotype analysis of Mycobacterium tuberculosis isolates from a sentinel surveillance population. Emerg. Infect. Dis. 8:1294-1302.
Cowan, L. S., L. Diem, T. Monson, P. Wand, D. Temporado, T. V. Oemig, and J. T. Crawford. 2005. Evaluation of a two-step approach for large-scale, prospective genotyping of Mycobacterium tuberculosis isolates in the United States. J. Clin. Microbiol. 43:688-695.
Frothingham, R., and W. A. Meeker-O'Connell. 1998. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 144:1189-1196.
Gibson, A. L., G. Hewinson, T. Goodchild, B. Watt, A. Story, J. Inwald, and F. A. Drobniewski. 2004. Molecular epidemiology of disease due to Mycobacterium bovis in humans in the United Kingdom. J. Clin. Microbiol. 42:431-434.
Gutierrez, M. C., S. Brisse, R. Brosch, M. Fahre, B. Omais, M. Marmiesse, P. Supply, and V. Vincent. 2005. Ancient origin and gene mosaicism of the progenitor of mycobacteriumtuberculosis. PLoS Pathog. 1:e5.
Gutierrez, M. C., J. C. Galan, J. Blazquez, E. Bouvet, and V. Vincent. 1999. Molecular markers demonstrate that the first described multidrug-resistant Mycobacterium bovis outbreak was due to Mycobacterium tuberculosis. J. Clin. Microbiol. 37:971-975.
Haddad, N., A. Ostyn, C. Karoui, M. Masselot, M. F. Thorel, S. L. Hughes, J. Inwald, R. G. Hewinson, and B. Durand. 2001. Spoligotype diversity of Mycobacterium bovis strains isolated in France from 1979 to 2000. J. Clin. Microbiol. 39:3623-3632.
Hilty, M., C. Diguimbaye, E. Schelling, F. Baggi, M. Tanner, and J. Zinsstag. 2005. Evaluation of the discriminatory power of variable number tandem repeat (VNTR) typing of Mycobacterium bovis strains. Vet. Microbiol. 109:217-222.
Kam, K. M., C. W. Yip, L. W. Tse, K. L. Wong, T. K. Lam, K. Kremer, B. K. Au, and D. van Soolingen. 2005. Utility of mycobacterial interspersed repetitive unit typing for differentiating multidrug-resistant Mycobacterium tuberculosis isolates of the Beijing family. J. Clin. Microbiol. 43:306-313.
Kamerbeek, J., L. Schouls, A. Kolk, M. van Agterveld, D. van Soolingen, S. Kuijper, A. Bunschoten, H. Molhuizen, R. Shaw, M. Goyal, and J. van Embden. 1997. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 35:907-914.
Kwara, A., R. Schiro, L. S. Cowan, N. E. Hyslop, M. F. Wiser, S. Roahen Harrison, P. Kissinger, L. Diem, and J. T. Crawford. 2003. Evaluation of the epidemiologic utility of secondary typing methods for differentiation of Mycobacterium tuberculosis isolates. J. Clin. Microbiol. 41:2683-2685.
Le Fleche, P., M. Fabre, F. Denoeud, J. L. Koeck, and G. Vergnaud. 2002. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol. 2:37.
LoBue, P. A., W. Betancourt, L. Cowan, L. Seli, C. Peter, and K. S. Moser. 2004. Identification of a familial cluster of pulmonary Mycobacterium bovis disease. Int. J. Tuberc. Lung Dis. 8:1142-1146.
O'Reilly, L. M., and C. J. Daborn. 1995. The epidemiology of Mycobacterium bovis infections in animals and man: a review. Tuber. Lung Dis. 76(Suppl. 1):1-46.
Palmer, D. N. M. A. 23 July 2004, revision date. Chapter 2.3.3. Bovine tuberculosis. In OIE manual of diagnostic tests and vaccines for terrestrial animals, 5th ed. World Organisation for Animal Health, Paris, France. [Online.] http://www.oie.int/eng/normes/en_mmanual.htm.
Palmer, M. V., W. R. Waters, and D. L. Whipple. 2004. Investigation of the transmission of Mycobacterium bovis from deer to cattle through indirect contact. Am. J. Vet. Res. 65:1483-1489.
Rigouts, L. D. M., J. Dufey, C. Saegerman, K. Fissette, K. Kremer, H. Traore, D. van Soolingen, K. Walravens, J. Godfroid, and F. Portaels. 2000. Third International Conference on Mycobacterium bovis, p. 39.
Robert, J., F. Boulahbal, D. Trystram, C. Truffot-Pernot, A. C. de Benoist, V. Vincent, V. Jarlier, J. Grosset, et al. 1999. A national survey of human Mycobacterium bovis infection in France. Int. J. Tuberc. Lung Dis. 3:711-714.
Roring, S., A. Scott, D. Brittain, I. Walker, G. Hewinson, S. Neill, and R. Skuce. 2002. Development of variable-number tandem repeat typing of Mycobacterium bovis: comparison of results with those obtained by using existing exact tandem repeats and spoligotyping. J. Clin. Microbiol. 40:2126-2133.
Roring, S., A. N. Scott, R. Glyn Hewinson, S. D. Neill, and R. A. Skuce. 2004. Evaluation of variable number tandem repeat (VNTR) loci in molecular typing of Mycobacterium bovis isolates from Ireland. Vet. Microbiol. 101:65-73.
Skuce, R. A., T. P. McCorry, J. F. McCarroll, S. M. Roring, A. N. Scott, D. Brittain, S. L. Hughes, R. G. Hewinson, and S. D. Neill. 2002. Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets. Microbiology 148:519-528.
Smith, N. H., J. Dale, J. Inwald, S. Palmer, S. V. Gordon, R. G. Hewinson, and J. M. Smith. 2003. The population structure of Mycobacterium bovis in Great Britain: clonal expansion. Proc. Natl. Acad. Sci. USA 100:15271-15275.
Smittipat, N., and P. Palittapongarnpim. 2000. Identification of possible loci of variable number of tandem repeats in Mycobacterium tuberculosis. Tuber. Lung Dis. 80:69-74.
Supply, P., S. Lesjean, E. Savine, K. Kremer, D. van Soolingen, and C. Locht. 2001. Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J. Clin. Microbiol. 39:3563-3571.
Supply, P., E. Mazars, S. Lesjean, V. Vincent, B. Gicquel, and C. Locht. 2000. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol. Microbiol. 36:762-771.
Tibayrenc, M., F. Kjellberg, and F. J. Ayala. 1990. A clonal theory of parasitic protozoa: the population structures of Entamoeba, Giardia, Leishmania, Naegleria, Plasmodium, Trichomonas, and Trypanosoma and their medical and taxonomical consequences. Proc. Natl. Acad. Sci. USA 87:2414-2418.
van Deutekom, H., P. Supply, P. de Haas, E. Willery, S. Hoijng, C. Locht, R. Coutinho, and D. van Soolingen. 2005. Molecular typing of Mycobacterium tuberculosis by mycobacterial interspersed repetitive unit-variable-number tandem repeat analysis, a more accurate method for identifying epidemiological links between patients with tuberculosis. J. Clin. Microbiol. 43:4473-4479.
van Embden, J. D., M. D. Cave, J. T. Crawford, J. W. Dale, K. D. Eisenach, B. Gicquel, P. Hermans, C. Martin, R. McAdam, T. M. Shinnick, et al. 1993. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J. Clin. Microbiol. 31: 406-409.
