Article (Scientific journals)
Overcoming software bottlenecks for scalable passive acoustic monitoring: A survey-informed expert consensus
Malerba, Martino E.; Bell, Kristian; Palacios, Maria M. et al.
2026 • In Ecological Informatics, 98, p. 103971
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Keywords :
Artificial intelligence; Bioacoustics; Data management; Passive acoustic monitoring; Scalable ecological monitoring; Software bottlenecks; Workflow optimisation; Ecology, Evolution, Behavior and Systematics; Modeling and Simulation; Ecology; Ecological Modeling; Computer Science Applications; Computational Theory and Mathematics; Applied Mathematics
Abstract :
[en] Passive acoustic monitoring (PAM) enables minimally invasive sampling of wildlife across broad spatial, temporal and taxonomic scales. Its ongoing and widespread use has generated unprecedented volumes of acoustic data, shifting the primary bottleneck from data collection to the storage, processing, integration, and interpretation of PAM outputs. Although many software tools exist to address these challenges, differences in their design, scope, and usability often result in fragmented, complex analytical workflows. To identify the key barriers and opportunities shaping the implementation of PAM surveys, we conducted a structured, community-informed consultation developed through iterative engagement, comprising international practitioners working across terrestrial and aquatic ecosystems. Thirty experts identified and ranked their most critical bottlenecks in current PAM workflows, spanning data storage, processing, and interpretation. The top challenge identified related to accurate species identification using deep learning and artificial intelligence (AI) models, especially in noisy soundscapes or for underrepresented taxa. Eight additional priority challenges included workflow fragmentation, limited availability of user-friendly analytical and visualisation tools, uneven access to software, manual validation bottlenecks, computational constraints, and difficulties in data handling, standardisation, and sharing. Using a follow-up consultation with 24 of the original 30 experts, we propose practical mitigation strategies for these priority challenges, supported by step-by-step guidance to help overcome key barriers. Together, these insights provide a roadmap toward more scalable, open-access, and collaborative software systems, which are increasingly essential to realise the full potential of PAM in global biodiversity monitoring.
Research Center/Unit :
FOCUS - Freshwater and OCeanic science Unit of reSearch - ULiège
Disciplines :
Biotechnology
Author, co-author :
Malerba, Martino E. ;  Centre for Nature Positive Solutions, Department of Biology, School of Science, RMIT University, Melbourne, Australia
Bell, Kristian ;  Centre for Nature Positive Solutions, Department of Biology, School of Science, RMIT University, Melbourne, Australia
Palacios, Maria M. ;  Centre for Nature Positive Solutions, Department of Biology, School of Science, RMIT University, Melbourne, Australia
Bellisario, Kristen M. ;  Purdue University, West Lafayette, United States
Desjonquères, Camille ;  Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, Grenoble, France
Márquez-Rodríguez, Alba ;  University of Cádiz, Institute of Marine Research (INMAR), International Campus of Excellence in Marine Science (CEIMAR), Cádiz, Spain
Mendoza, Irene ;  University of Sevilla, Department of Plant Biology and Ecology, Facultad de Biología, Sevilla, Spain
Meyer, Christoph F.J. ;  Environmental Research and Innovation Centre (ERIC), University of Salford, Salford, United Kingdom
Ramesh, Vijay ;  Center for Avian Population Studies, Cornell Lab of Ornithology, Ithaca, United States
Raick, Xavier  ;  Université de Liège - ULiège > Département de Biologie, Ecologie et Evolution > Morphologie fonctionnelle et évolutive ; K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, Ithaca, United States ; Marine Mammal Research, Department of Ecoscience, Aarhus University, Roskilde, Denmark
Rhinehart, Tessa A. ;  Department of Biological Sciences, University of Pittsburgh, Pittsburgh, United States
Wood, Connor M. ;  K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, Ithaca, United States
Ziegenhorn, Morgan A. ;  Manomet Conservation Sciences, Inc., Manomet, United States
Buscaino, Giuseppa ;  Institute for the Study of Anthropic Impact and Sustainability in the Marine Environment (IAS), National Research Council of Italy (CNR), Campobello di Mazara, Italy
Campos-Cerqueira, Marconi ;  WildMon, Lewes, United States
Duarte, Marina H.L. ;  Environmental Research and Innovation Centre (ERIC), University of Salford, Salford, United Kingdom ; Center for Avian Population Studies, Cornell Lab of Ornithology, Ithaca, United States
Gasc, Amandine ;  IMBE, Aix Marseille Univ, Avignon Univ, CNRS, IRD, Aix-en-Provence, France
Hanf-Dressler, Tara ;  Department of Evolutionary Ecology, Leibniz Institute for Zoo and Wildlife Research (IZW), Berlin, Germany
Juanes, Francis ;  Department of Biology, University of Victoria, Victoria, Canada
do Nascimento, Leandro Aparecido ;  Map of Life, New Haven, United States
Rountree, Rodney A. ;  Department of Biology, University of Victoria, Victoria, Canada ; The Fish Listener, Waquoit, United States
Thomisch, Karolin ;  Ocean Acoustics Group, Alfred Wegener Institute Helmholz Centre for Polar and Marine Research, Bremerhaven, Germany
Toledo, Luís Felipe ;  Laboratório de História Natural de Anfíbios Brasileiros (LaHNAB), Universidade Estadual de Campinas (UNICAMP), São Paulo, Brazil
Toka, Mosikidi ;  South African Environmental Observation Network (SAEON), University of the Free State, Pretoria, South Africa
Vieira, Manuel ;  MARE – Marine and Environmental Sciences Centre, ARNET – Aquatic Research Network, Faculdade de Ciências da Universidade de Lisboa, Lisbon, Portugal ; ENES Bioacoustics Research Laboratory, CRNL, CNRS, Inserm, University of Saint-Etienne, Saint-Etienne, France
Pérez-Granados, Cristian ;  Biodiversity Conservation and Management Programme, Forest Science and Technology Center or Catalonia (CTFC), Lleida, Spain
More authors (16 more) Less
Language :
English
Title :
Overcoming software bottlenecks for scalable passive acoustic monitoring: A survey-informed expert consensus
Publication date :
September 2026
Journal title :
Ecological Informatics
ISSN :
1574-9541
eISSN :
1878-0512
Publisher :
Elsevier B.V.
Volume :
98
Pages :
103971
Peer reviewed :
Peer Reviewed verified by ORBi
Development Goals :
15. Life on land
14. Life below water
Funders :
European Union. Marie Skłodowska-Curie Actions
CNPq - Conselho Nacional de Desenvolvimento Científico e Tecnológico
FAPESP - Fundação de Amparo à Pesquisa do Estado de São Paulo
Government of Western Australia
WBI - Wallonie-Bruxelles International
ARC - Australian Research Council
MICINN - Ministerio de Ciencia, Innovación y Universidades
BAEF - Belgian American Educational Foundation
Funding text :
MEM thanks the support of the Australian Government through an Australian Research Council grant (project ID DE220100752 ). CPG was funded by the Ram\u00F3n y Cajal 2024 Programme ( RYC2024-048830-I ) of the Spanish Ministry of Science, Innovation and Universities, funded by MICIU/AEI/10.13039/501100011033 and FSE+ . We acknowledge the use of generative artificial intelligence tools to correct grammatical errors and improve the clarity of the text of an earlier version of this article. XR thanks the Belgian American Educational Foundation (BAEF) and Wallonia-Brussels International (WBI) for their support. Grants and fellowships were provided to LFT by the S\u00E3o Paulo Research Foundation (FAPESP #2022/11096-8 ) and the National Council for Scientific and Technological Development (CNPq #302834/2020-6 ). IM thanks the support of the Spanish National Parks Autonomous Agency (OAPN) for funding through the RarAvis project (Reference; 3377/2025). CD was supported by the European Union's Horizon 2020 research and innovation programme under the Marie Sk\u0142odowska-Curie grant agreement No AMD-101106862-1 . KMB was supported in part by the National Science Foundation under award OAC-2513947 .
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