Doctoral thesis (Dissertations and theses)
Breathomics for Clinical Pulmonology: Advancing a TD-GC×GC-MS Platform Toward Direct Clinical Implementation
Massenet, Thibault
2026
 

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Keywords :
Translational medicine; Exhaled Breath Analysis; Comprehensive two-dimensional gas chromatography; New diagnostic tool; Breathomics; Asthma; SSc-ILD; SICRIT-HRMS
Abstract :
[en] Exhaled breath contains hundreds of volatile organic compounds (VOCs) that reflect ongoing metabolic and inflammatory processes, making breath analysis an attractive non-invasive approach in respiratory medicine. Despite three decades of research, no VOC-based test has entered routine clinical practice. This thesis addresses that gap by treating analytical performance and clinical feasibility as co-equal requirements rather than sequential concerns, following the translational pathway a breath biomarker must travel: how the sample is collected, what it adds to clinical assessment, whether it can inform a treatment decision before it is taken, and how it could eventually be measured in a clinical laboratory. All work was built upon an established thermal desorption comprehensive two-dimensional gas chromatography mass spectrometry (TD-GC×GC-MS) platform. The three offline sampling devices in widest use were first compared within the peppermint benchmarking protocol. No device proved universally optimal. Tedlar® bags showed the lowest overall variability (mean pooled RSD 54%) but sensitivity to exogenous contamination; ReCIVA® offered superior selectivity and reduced background at the cost of detecting fewer compounds, greater complexity and higher cost; BioVOC-2® provided operational simplicity but limited sensitivity. Focus groups with clinicians, researchers and participants established practical requirements for clinical deployment, yielding use-case-dependent guidance and extending the peppermint reference database. VOC profiling was then evaluated as a supplementary clinical parameter in two contrasting settings. In 79 patients with uncontrolled moderate-to-severe asthma randomised to a 12-week submaximal aerobic training programme, clear improvements in symptom control, quality of life and exercise tolerance occurred without detectable modulation of airway or systemic inflammation, including VOCs. In a bicentric cohort of 42 systemic sclerosis patients, a nine-compound signature discriminated those with interstitial lung disease with an AUC of 0.82, comparable to DLco (0.83). An eosinophil-derived 17-VOC signature measured immediately before the first anti-IL-5/Rα injection predicted clinical response with AUROCs of 0.95 and 0.98 in two independent cohorts analysed through entirely separate workflows, outperforming FeNO and blood eosinophil count. Comparable accuracy was retained by a five-compound subset of reactive aldehyde species. Finally, SICRIT coupled to high-resolution mass spectrometry was evaluated for the direct measurement of 16 clinically relevant aldehydes. Linearity was good for 13 compounds (R² ≥ 0.99), with limits of detection between 1.33 and 25.13 ppbv and low intra-day variability. Protonated species emerged as the preferred monitoring targets, ionisation competition from a Tedlar® contaminant was identified and mitigated, and cyclic ion mobility permitted tentative isomer separation at a prohibitive sensitivity cost. Taken together, this work shows that a single breath sample and a single workflow can address clinically diverse questions that conventional parameters answer only partially, and that the obstacles to implementation are identifiable and addressable. It does not deliver a ready-to-use test, but contributes comparative data for standardisation, a refined molecular target, and an analytical route toward measurement compatible with clinical timescales.
Disciplines :
Chemistry
Author, co-author :
Massenet, Thibault  ;  Université de Liège - ULiège > Faculté des Sciences > Form. doct. sc. (chimie - paysage) ; Université de Liège - ULiège > Faculté des Sciences > Doct. scienc. (chimie)
Language :
English
Title :
Breathomics for Clinical Pulmonology: Advancing a TD-GC×GC-MS Platform Toward Direct Clinical Implementation
Defense date :
31 August 2026
Institution :
Université de Liège [Faculté des sciences], Liège, Belgium
Degree :
Doctorat en sciences (chimie)
Promotor :
Stefanuto, Pierre-Hugues;  Université de Liège - ULiège > Département de chimie (sciences)
President :
Quinton, Loïc;  Université de Liège - ULiège > Département de chimie (sciences) > Chimie biologique
Secretary :
Focant, Jean-François;  Université de Liège - ULiège > Département de chimie (sciences) > Chimie analytique, organique et biologique
Jury member :
Stefanuto, Pierre-Hugues;  Université de Liège - ULiège > Département de chimie (sciences)
SCHLEICH, FLorence;  Centre Hospitalier Universitaire de Liège - CHU > > Service de pneumologie - allergologie
VANIYA, Arpana
WILDE, Michael
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