[en] Fusarium wilt of banana (FWB) is a major agricultural threat worldwide, historically attributed to several races of Fusarium oxysporum f. sp. cubense (Foc). The updated taxonomic scheme tends to group these races of Foc into distinct species. In addition to the F. oxysporum species complex (FOSC), a few species within the Fusarium fujikuroi species complex (FFSC) have occasionally been reported on bananas. In eastern Democratic Republic of Congo, FWB has been reported across North and South Kivu. This study aims to assess the diversity of Fusarium locally associated with FWB through morphological, phylogenetic, and pathogenic characterization. Seventy Fusarium strains were isolated from pseudostems showing infection of vascular tissues. Morphological characterization was performed on synthetic low-nutrient agar, potato dextrose agar, and carnation leaf agar. Pathogenicity was assessed on Cavendish and Gros-Michel in greenhouse conditions. Molecular phylogenetic relationships were inferred based on DNA sequence data from partial translation elongation factor 1-alpha and the second-largest subunit of RNA polymerase. To confirm species identity, partial calmodulin and beta-tubulin gene regions were also sequenced for some strains. Of the 70 Fusarium strains analyzed, 31 belonged to the FOSC, including 28 strains identified as F. tardichlamydosporum and one strain (F141) identified as F. duoseptatum, both previously recognized as Foc Race 1. Two additional FOSC strains (F93 and F146) formed a distinct clade, separate from the newly defined Foc species. No isolate was identified as F. odoratissimum (Foc TR4). Thirty-five strains were classified as F. joanfreemaniae, a member of the F. fujikuroi species complex. In addition, F. solani, F. andiyazi, and F. incarnatum have been reported. Fusarium tardichlamydosporum and F. duoseptatum strains induced symptoms under all tested conditions. Inversely, F. joanfreemaniae caused symptoms on Gros Michel and Cavendish only under stressed, injured roots, indicating a weak or opportunistic role. This highlights a multi-species disease complex with implications for resistance-based management.
Disciplines :
Agriculture & agronomy
Author, co-author :
Mugisho, Janvier Zirhumana ; Applied Microbiology, Earth and Life Institute, Université Catholique de Louvain, Louvain-La-Neuve, Belgium ; Laboratory of Phytopathology, Université Evangélique en Afrique, Bukavu, Democratic Republic Congo
Decock, Cony; Mycothèque de L’UCLouvain (BCCM/MUCL), Earth and Life Institute, Université Catholique de Louvain, Louvain-La-Neuve, Belgium
Cokola Cuma, Marcellin ; Université de Liège - ULiège > Département GxABT > Entomologie, Phytopathologie et Productions Innovantes (EPPI)
Bisimwa, Espoir Basengere; Laboratory of Phytopathology, Université Evangélique en Afrique, Bukavu, Democratic Republic Congo
Legrève, Anne; Applied Microbiology, Earth and Life Institute, Université Catholique de Louvain, Louvain-La-Neuve, Belgium
Language :
English
Title :
Diversity of Fusarium associated with banana wilt in eastern Democratic Republic of Congo
Publication date :
15 June 2026
Journal title :
Tropical Plant Pathology
ISSN :
1982-5676
Publisher :
Springer Science and Business Media Deutschland GmbH
Pain pour le monde UCLouvain - Université catholique de Louvain BELSPO - Belgian Federal Science Policy Office
Funding text :
The survey was funded by the Université Evangélique en Afrique, through the project on improving research and teaching quality, funded by Pain pour le Monde (Project A-COD-2018\u20130383). The characterization of Fusarium strains was supported by Applied Microbiology, Earth and Life Institute, UCLouvain. Cony Decock gratefully acknowledges the financial support received from the Belgian State\u2014Belgian Federal Science Policy through the BCCM program.
Aguayo J Cerf-Wendling I Folscher AB Fourrier-Jeandel C Ioos R Mathews MC Mostert D Renault C Wilson V Viljoen A First report of Fusarium oxysporum f. sp. cubense tropical race 4 (TR4) causing banana wilt in the Island of Mayotte Plant Disease 2021 105 219
Akankwasa K Marimo P Tumuhimbise R Asasira M Khakasa E Mpirirwe I Kleih U Forsythe L Fliedel G Dufour D Nowakunda K The East African highland cooking bananas ‘Matooke’ preferences of farmers and traders: implications for variety development International Journal of Food Science & Technology 2021 56 1124 1134 1:CAS:528:DC%2BB3cXitVSit7fL
Bedoya TE Bebber DP Studholme DJ Taxonomic revision of the banana Fusarium wilt TR4 pathogen is premature Phytopathology 2021 111 2141 2145
Beed F Fiaboe K Ouma E Vigheri N Tinzaara W Scale and scope of the problems due to BXW in Eastern D.R.C. (North and South Kivu and Province Oriental): an expert evaluation of existing information 2010 Ibadan IITA/USAID 28
Chittarath K Nguyen C Bailey W Zheng SJ Mostert D Viljoen A Tazuba A Ocimati W Kearsley E Chi T Tho N Hung N Dita M Shah T Karanja M Mahuku G Blomme G Geographical distribution and genetic diversity of the banana Fusarium wilt fungus in Laos and Vietnam Journal of Fungi 2022 8 1:CAS:528:DC%2BB38Xnt1WltLo%3D 35049986 8781582 46
Cui Y Wu B Peng A Song X Chen X The genome of banana leaf blight pathogen Fusarium sacchari str. FS66 harbors widespread gene transfer from Fusarium oxysporum Frontiers in Plant Science 2021 12 33613610 7889605 629859
Czislowski E Fraser-Smith S Zander M O’Neill WT Meldrum RA Tran-Nguyen LTT Batley J Aitken EAB Investigation of the diversity of effector genes in the banana pathogen, Fusarium oxysporum f. sp. cubense, reveals evidence of horizontal gene transfer Molecular Plant Pathology 2018 19 1155 1171 1:CAS:528:DC%2BC1cXnvVShtb0%3D 28802020
Czislowski E Zeil-Rolfe I Aitken EAB Effector profiles of endophytic Fusarium associated with asymptomatic banana (Musa sp.) hosts International Journal of Molecular Sciences 2021 22 1:CAS:528:DC%2BB3MXotFyks7w%3D 33801529 7975973 2508
Dita M Barquero M Heck D Mizubuti ESG Staver CP Fusarium wilt of banana: current knowledge on epidemiology and research needs toward sustainable disease management Frontiers in Plant Science 2018 9 30405651 6202804 1468
Dita M, Waalwijk C, Paiva L, Souza MT Jr, Kema G (2011) A greenhouse bioassay for the Fusarium oxysporum f. sp. cubense × ‘Grand Naine’ (Musa, AAA, Cavendish subgroup) interaction. Acta Hortic 897:51
dos Santos Santana J Custódio FA Liparini Pereira O First report of Fusarium triseptatum and Fusarium sacchari causing vascular wilt on banana plants in Brazil J Plant Pathol 2026 108 825 826
Drenth A Kema G The vulnerability of bananas to globally emerging disease threats Phytopathology 2021 111 2146 2161 34231377
Edel-Hermann V Lecomte C Current status of Fusarium oxysporum formae speciales and races Phytopathology 2019 109 512 530 1:CAS:528:DC%2BB3cXhsVChu73L 30461350
EFSA PLH Panel Bragard C Baptista P Chatzivassiliou E Di Serio F Gonthier P Jaques Miret JA Justesen AF MacLeod A Magnusson CS Milonas P Navas-Cortes JA Parnell S Potting R Stefani E Thulke HH Van der Werf W Civera AV Yuen J Zappalà L Migheli Q Vloutoglou I Maiorano A Streissl F Reignault PL Scientific opinion on the pest categorisation of Fusarium oxysporum f. sp. cubense Tropical Race 4 EFSA Journal 2022 20 7092
Evans EA, Ballen FH, Siddiq M (2020) Banana production, global trade, consumption trends, postharvest handling, and processing. In: Siddiq M, Ahmed J, Lobo MG (eds) Handbook of banana production, postharvest science, processing technology, and nutrition, pp 1–18
Fourie G Steenkamp ET Gordon TR Viljoen A Evolutionary relationships among the Fusarium oxysporum f. sp. cubense vegetative compatibility groups Applied and Environment Microbiology 2009 75 4770 4781 1:CAS:528:DC%2BD1MXptV2gsL4%3D
Fourie G Steenkamp ET Ploetz RC Gordon TR Viljoen A Current status of the taxonomic position of Fusarium oxysporum f. sp. cubense within the Fusarium oxysporum complex Infection, Genetics and Evolution 2011 11 533 542 1:CAS:528:DC%2BC3MXkt1aksrY%3D 21256980
Garcia RO Rivera-Vargas LI Ploetz R Correll JC Irish BM Characterization of Fusarium spp. isolates recovered from bananas (Musa spp.) affected by Fusarium wilt in Puerto Rico European Journal of Plant Pathology 2018 152 599 611 1:CAS:528:DC%2BC1cXhtFGgsLbJ
García-Bastidas FA Van der Veen AJT Nakasato-Tagami G Meijer HJG Arango-Isaza RE Kema GHJ An improved phenotyping protocol for Panama disease in banana Frontiers in Plant Science 2019 10 31447871 6691145 1006
Ghag SB Shekhawat UKS Ganapathi TR Fusarium wilt of banana: biology, epidemiology and management Int J Pest Manag 2015 61 250 263
Glass NL Jacobson DJ Shiu PK The genetics of hyphal fusion and vegetative incompatibility in filamentous ascomycete fungi Annual Review of Genetics 2000 34 165 186 1:CAS:528:DC%2BD3MXlvFKqsA%3D%3D 11092825
González-Arriagada MP Heck DW Silva RA Santos A Alves G del Ponte EM Mizubuti ESG Spatiotemporal dynamics of Fusarium wilt of banana caused by subtropical race 4 Trop Plant Pathol 2024 49 886 897
Han S-L, Zhao P, Wang M, Jiang X, Liu F, Huang J-E, Cai L (2025) What is Fusarium forma specialis? Mycology 16:1522–1557
Huang S-P Wei J-G Guo T-X Li Q-L Tang L-H Mo J-Y Wei J-F Yang X-B First report of sheath rot caused by Fusarium proliferatum on Pisang Awak banana (Musa ABB) in China J Plant Pathol 2019 101 679
Karamura D Karamura E Tinzaara W Banana cultivar names, synonyms and their usage in Eastern Africa 2012 Kampala Bioversity International 1 108
Karangwa P Blomme G Beed F Niyongere C Viljoen A The distribution and incidence of banana Fusarium wilt in subsistence farming systems in East and Central Africa Crop Protection 2016 84 132 140
Karangwa P Mostert D Ndayihanzamaso P Dubois T Niere B Zum Felde A Schouten A Blomme G Beed F Viljoen A Genetic diversity of Fusarium oxysporum f. sp. cubense in East and Central Africa Plant Disease 2018 102 552 560 1:CAS:528:DC%2BC1MXhtlelsLo%3D 30673475
Kema GHJ Drenth A Dita M Jansen K Vellema S Stoorvogel JJ Fusarium wilt of banana, a recurring threat to global banana production Frontiers in Plant Science 2021 11 33505419 7829247 628888
Kuswinanti T, Baharuddin, Halide R (2011) Race determination of Fusarium oxysporum f. sp. cubense using virulence test on four banana cultivars. J Fitomedika 8:29–32
Larkin MA Blackshields G Brown NP Chenna R McGettigan PA McWilliam H Valentin F Wallace IM Wilm A Lopez R Thompson JD Gibson TJ Higgins DG Clustal W and Clustal X version 2.0 Bioinformatics 2007 23 2947 2948 1:CAS:528:DC%2BD2sXhtlaqsL%2FM 17846036
Lin YH Su CC Chao CP Chen CY Chang CJ Huang JW Chang PFL A molecular diagnosis method using real-time PCR for quantification and detection of Fusarium oxysporum f. sp. cubense race 4 European Journal of Plant Pathology 2013 135 395 405 1:CAS:528:DC%2BC3sXlvVajuw%3D%3D
Liu X Xing M Kong C Fang Z Yang L Zhang Y Wang Y Ling J Yang Y Lv H Genetic diversity, virulence, race profiling, and comparative genomic analysis of the Fusarium oxysporum f. sp. conglutinans strains infecting cabbages in China Frontiers in Microbiology 2019 10 31293534 6603142 1373
Madalla NA Swennen R Brown A Carpentier S Van den Bergh I Crichton R Ortiz R Farmers’ preferences for East African highland cooking banana ‘Matooke’ hybrids and local cultivars Agric Food Secur 2023 12 2
Magdama F Monserrate ML Serrano L Onofre J Jimenez-Gasco MDM Genetic diversity of Fusarium oxysporum f. sp. cubense, the Fusarium wilt pathogen of banana, in Ecuador Plants 2020 9 1:CAS:528:DC%2BB3cXitFGntbjP 32882937 7570379 1133
Maldonado-Bonilla L Calderón-Oropeza M Villarruel-Ordaz J Sánchez Espinosa A Identification of novel potential causal agents of Fusarium wilt of Musa sp. AAB in southern Mexico J Plant Pathol Microbiol 2019 10 479
Marasas WF Ploetz RC Wingfield MJ Wingfield BD Steenkamp ET Mango malformation disease and the associated Fusarium species Phytopathology 2006 96 667 672 1:STN:280:DC%2BD1cjks1Whug%3D%3D 18943188
Marimo P Caron C Van den Bergh I Crichton R Weltzien E Ortiz R Tumuhimbise R Gender and trait preferences for banana cultivation and use in Sub-Saharan Africa: a literature review Economic Botany 2020 74 226 241
Martínez-de la Parte E Pérez-Vicente L Torres DE van Westerhoven AC Meijer HJG Seidl MF Kema GHJ Genetic diversity of the banana fusarium wilt pathogen in Cuba and across Latin America and the Caribbean Environmental Microbiology 2024 26 38783572 e16636
Maryani N Lombard L Poerba YS Subandiyah S Crous PW Kema GHJ Phylogeny and genetic diversity of the banana fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin Studies in Mycology 2019 92 155 194 1:STN:280:DC%2BB3c7ps1Smtw%3D%3D 30122796
Médard SK Godefroid MTK Bénoit DD Level of infestation of plantain banana cultivars by the black weevil Cosmopolites sordidus (Germar) in the Kisangani region, Democratic Republic of Congo Eur J Ecol Biol Agric 2025 2 144 152
Mmadi M Azali HA Mostert D Robène I Viljoen A First report of Fusarium wilt of Cavendish bananas caused by Fusarium oxysporum f. sp. cubense tropical race 4 in the Grande Comoros Island Plant Disease 2023 107 4029
Mostert D Wicker E De Jager MM Al Kaabi SM O’Neill WT Perry S Li C Yang G Pegg KG Mostert L Viljoen A A polyphasic approach reveals novel genotypes and updates the genetic structure of the banana fusarium wilt pathogen Microorganisms 2022 10 1:CAS:528:DC%2BB38XovFGgu78%3D 35208723 8876670 269
Mukeshambala F Ibanda A Lassois L Semacumu G Djailo D Nabahungu L Blomme G Monde G In vitro inhibition of Xanthomonas vasicola pv. musacearum, the causal agent of banana Xanthomonas wilt, using medicinal plant extracts from North Kivu, Eastern Democratic Republic of Congo Discov Agric 2024 2 1:CAS:528:DC%2BB28XlvFKjt7g%3D 78
Müller K, Müller J, Quandt D (2010) PhyDE®: phylogenetic data editor, version 0.9971. http://www.phyde.de/. Accessed 22 Aug 2025
Ndayihanzamaso P Karangwa P Mostert D Mahuku G Blomme G Beed F Viljoen A The development of a multiplex PCR assay for the detection of Fusarium oxysporum f. sp. cubense lineage VI strains in East and Central Africa Eur J Plant Pathol 2020 158 495 509 1:CAS:528:DC%2BB3cXhsFaju7bF
Nozawa S Seto Y Takata Y Narreto L Valle R Okui K Taida S Alvindia D Reyes R Watanabe K Fusarium mindanaoense sp. nov., a new Fusarium wilt pathogen of Cavendish banana from the Philippines belonging to the F. fujikuroi species complex J Fungi 2023 9 1:CAS:528:DC%2BB3sXpvVert7g%3D 443
O’Donnell K Cigelnik E Casper HH Molecular phylogenetic, morphological, and mycotoxin data support reidentification of the Quorn mycoprotein fungus as Fusarium venenatum Fungal Genetics and Biology 1998 23 57 67 9501477
O’Donnell K, Humber RA, Geiser DM, Kang S, Park B, Robert VARG, Crous PW, Johnston PR, Aoki T, Rooney AP, Rehner SA (2012) Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST. Mycologia 104(2):427–445
O’Donnell K Nirenberg H Aoki T Cigelnik E A multigene phylogeny of the Gibberella fujikuroi species complex: detection of additional phylogenetically distinct species Mycoscience 2012 41 61 78
O’Donnell K Sutton DA Rinaldi MG Sarver BA Balajee SA Schroers HJ Summerbell RC Robert VA Crous PW Zhang N Aoki T Jung K Park J Lee YH Kang S Park B Geiser DM Internet-accessible DNA sequence database for identifying fusaria from human and animal infections Journal of Clinical Microbiology 2010 48 3708 3718 20686083 2953079
Ordonez N Seidl MF Waalwijk C Drenth A Kilian A Thomma BPHJ Ploetz RC Kema GHJ Worse comes to worst: bananas and Panama disease—when plant and pathogen clones meet PLoS Pathogens 2015 11 26584184 4652896 e1005197
Pegg KG Coates LM O’Neill WT Turner DW The epidemiology of Fusarium wilt of banana Frontiers in Plant Science 2019 10 1395 31921221 6933004
Ploetz RC Fusarium wilt of banana is caused by several pathogens referred to as Fusarium oxysporum f. sp. cubense Phytopathology 2006 96 653 656 18943184
Ploetz RC Management of Fusarium wilt of banana: a review with special reference to tropical race 4 Crop Protection 2015 73 7 15 1:CAS:528:DC%2BC2MXhtFKgt7Y%3D
Qiu R Li C Li X Zhang Y Liu C Li C Chen Y Bai J Xu M Song R Li S First report of Fusarium sacchari causing root rot of tobacco (Nicotiana tabacum L.) in China Crop Protection 2023 174 106437
Roberts JM Carvalhais LCA O’Dwyer CA Rincón-Flórez VA Drenth A Diagnostics of Fusarium wilt in banana: current status and challenges Plant Pathology 2024 73 760 776
Rutherford MA Molina AB Masdek NH Liew KW Fusarium wilt of banana in East Africa Banana Fusarium wilt management: towards sustainable cultivation, Proc Int workshop on the banana Fusarium wilt disease, 18–20 Oct 1999 2001 Malaysia Genting Highlands Resort 86 94
Sánchez GC de Lapeyre de Bellaire L Sandoval Fernández JA Tixier P Preference of Cosmopolites sordidus for Fusarium wilt-diseased banana plants Journal of Applied Entomology 2023 147 140 146
Simmonds NW Shepherd K The taxonomy and origins of the cultivated bananas Botanical Journal of the Linnean Society 1955 55 302 312
Stamatakis A RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Bioinformatics 2014 30 1312 1313 1:CAS:528:DC%2BC2cXmvFCjsbc%3D 24451623 3998144
Stover RH Fusarial wilt (Panama disease) of bananas and other Musa species 1962 Kew, England Commonwealth Mycological Institute
Stover RH Simmonds NW Classification of banana cultivars Bananas 1987 3 97 103
Tamura K Stecher G Kumar S MEGA11: molecular evolutionary genetics analysis version 11 Molecular Biology and Evolution 2021 38 3022 3027 1:CAS:528:DC%2BB3MXitlCktrfN 33892491 8233496
Tan YP, Shivas RG (2023) Index of Australian Fungi 5:1–12. https://id.biodiversity.org.au/reference/fungi/60115264
Thangavelu R Amaresh H Gopi M Loganathan M Nithya B Ganga Devi P Anuradha C Thirugnanavel A Patil KB Blomme G et al. Geographical distribution, host range and genetic diversity of Fusarium oxysporum f. sp. cubense causing Fusarium wilt of banana in India J Fungi 2024 10 1:CAS:528:DC%2BB2MXmvFant70%3D 887
Thi L Mertens A Vu DT Vu TD Minh PLA Duc HN Le Thi L Anh Minh PL de Backer S Swennen R Vandelook F Panis B Amalfi M Decock C Gomes SIF Merckx VSFT Janssens SB Diversity of Fusarium associated banana wilt in northern Viet Nam MycoKeys 2022 87 53 87 35210922 8854238
Tshikhudo PP Rambauli M Mnguni S Nnzeru LR Mulabisana J Cruywagen EM Sutherland R Munyai TC Pathogens threatening agriculture and biodiversity in South Africa: a horizon scanning approach Trop Plant Pathol 2025 50 4
Ujat AH Vadamalai G Hattori Y Nakashima C Wong CKF Zulperi D Current classification and diversity of Fusarium species complex, the causal pathogen of Fusarium wilt disease of banana in Malaysia Agronomy 2021 11 1:CAS:528:DC%2BB3MXisleisbfM 1955
Van Dam P Rep M The distribution of miniature impala elements and SIX genes in the Fusarium genus is suggestive of horizontal gene transfer Journal of Molecular Evolution 2017 85 14 25 28744785 5579170
Van Westerhoven AC Meijer HJ Houdijk J Martínez de la Parte E Matabuana EL Seidl MF Kema GH Dissemination of Fusarium wilt of banana in Mozambique caused by Fusarium odoratissimum Tropical Race 4 Plant Disease 2023 107 628 632 35984393
Viljoen A Mahuku G Massawe C Ssali RT Kimunye J Mostert G Ndayihanzamaso P Coyne DL Banana pests and diseases: field guide for disease diagnostics and data collection 2017 Ibadan, Nigeria International Institute of Tropical Agriculture (IITA) 73
Visser M Gordon T Fourie G Viljoen A Characterization of South African isolates of Fusarium oxysporum f. sp. cubense from Cavendish banana South African Journal of Science 2010 106 154
Warman NM Aitken EAB The movement of Fusarium oxysporum f. sp. cubense (Sub-Tropical Race 4) in susceptible cultivars of banana Frontiers in Plant Science 2018 9 30538716 6277567 1748
Willocquet L Savary S Singh KP Revisiting the use of disease index and of disease scores in plant pathology Indian Phytopathol 2023 76 909 914