[en] By incompletely understood mechanisms, type 2 (T2) inflammation present in the airways of severe asthmatics drives the formation of pathologic mucus which leads to airway mucus plugging. Here we investigate the molecular role and clinical significance of intelectin-1 (ITLN-1) in the development of pathologic airway mucus in asthma. Through analyses of human airway epithelial cells we find that ITLN1 gene expression is highly induced by interleukin-13 (IL-13) in a subset of metaplastic MUC5AC+ mucus secretory cells, and that ITLN-1 protein is a secreted component of IL-13-induced mucus. Additionally, we find ITLN-1 protein binds the C-terminus of the MUC5AC mucin and that its deletion in airway epithelial cells partially reverses IL-13-induced mucostasis. Through analysis of nasal airway epithelial brushings, we find that ITLN1 is highly expressed in T2-high asthmatics, when compared to T2-low children. Furthermore, we demonstrate that both ITLN-1 gene expression and protein levels are significantly reduced by a common genetic variant that is associated with protection from the formation of mucus plugs in T2-high asthma. This work identifies an important biomarker and targetable pathways for the treatment of mucus obstruction in asthma.
Disciplines :
Biochemistry, biophysics & molecular biology
Author, co-author :
Everman, Jamie L ; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Sajuthi, Satria P ; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Liégeois, Maude ; Université de Liège - ULiège > Département des sciences fonctionnelles (DSF) > Biochimie et biologie moléculaire ; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Jackson, Nathan D; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Collet, Erik H ; Department of Cell and Developmental Biology, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA
Peters, Michael C; Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Chioccioli, Maurizio; Department of Genetics and Comparative Medicine, Yale University School of Medicine, New Haven, CT, USA
Moore, Camille M; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Patel, Bhavika B; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Dyjack, Nathan; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Powell, Roger; Department of Pharmaceutical Sciences, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA
Rios, Cydney; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Montgomery, Michael T ; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Eng, Celeste; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Elhawary, Jennifer R ; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Mak, Angel C Y ; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Hu, Donglei ; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Huntsman, Scott; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Salazar, Sandra; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Feriani, Luigi ; Biological and Soft Systems Sector, Cavendish Laboratory, University of Cambridge, Cambridge, UK
Fairbanks-Mahnke, Ana; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Zinnen, Gianna L; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA
Michel, Cole R; Department of Pharmaceutical Sciences, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA
Gomez, Joe; Department of Pharmaceutical Sciences, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA
Zhang, Xing; Department of Pharmaceutical Sciences, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA
Medina, Vivian; Centro de Neumología Pediatrica, San Juan, PR, USA
Chu, Hong Wei; Department of Medicine, National Jewish Health, Denver, CO, USA
Cicuta, Pietro ; Biological and Soft Systems Sector, Cavendish Laboratory, University of Cambridge, Cambridge, UK
Gordon, Erin D; Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Zeitlin, Pamela; Department of Pediatrics, National Jewish Health, Denver, CO, USA
Ortega, Victor E; Mayo Clinic, Phoenix, AZ, USA
Reisdorph, Nichole; Department of Pharmaceutical Sciences, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA
Dunican, Eleanor M ; School of Medicine, St. Vincent's University Hospital, University College Dublin, Dublin, Ireland
Tang, Monica ; Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Elicker, Brett M; University of California-San Francisco, San Francisco, CA, USA
Henry, Travis S; Duke University, Durham, NC, USA
Bleecker, Eugene R; Department of Internal Medicine, Mayo Clinic, Phoenix, AZ, USA
Castro, Mario ; University of Kansas Medical Center, Kansas City, KS, USA
Erzurum, Serpil C; Cleveland Clinic, Cleveland, OH, USA
Israel, Elliot; Harvard University, Cambridge, MA, USA
Levy, Bruce D; Brigham and Women's Hospital and Harvard University, Cambridge, MA, USA
Mauger, David T; Pennsylvania State University, Hershey, PA, USA
Meyers, Deborah A; Department of Internal Medicine, Mayo Clinic, Phoenix, AZ, USA
Sumino, Kaharu; Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA
Gierada, David S; Washington University, St. Louis, MO, USA
Hastie, Annette T ; Wake Forest University School of Medicine, Department of Internal Medicine, Section on Pulmonary, Critical Care, Allergy and Immunologic Diseases, Winston Salem, NC, USA
Moore, Wendy C; Wake Forest University School of Medicine, Department of Internal Medicine, Section on Pulmonary, Critical Care, Allergy and Immunologic Diseases, Winston Salem, NC, USA
Denlinger, Loren C; University of Wisconsin-Madison, Madison, WI, USA
Jarjour, Nizar N; University of Wisconsin-Madison, Madison, WI, USA
Schiebler, Mark L ; University of Wisconsin-Madison, Madison, WI, USA
Wenzel, Sally E ; University of Pittsburgh, Pittsburgh, PA, USA
Woodruff, Prescott G; Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Rodriguez-Santana, Jose; Centro de Neumología Pediatrica, San Juan, PR, USA
Pearson, Chad G ; Department of Cell and Developmental Biology, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA
Burchard, Esteban G; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Fahy, John V; Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
Seibold, Max A ; Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA. seiboldm@njhealth.org ; Department of Pediatrics, National Jewish Health, Denver, CO, USA. seiboldm@njhealth.org ; Division of Pulmonary Sciences and Critical Care Medicine, Department of Medicine, University of Colorado-Anschutz Medical Campus, Aurora, CO, USA. seiboldm@njhealth.org
NHLBI - National Heart Lung and Blood Institute NIGMS - National Institute of General Medical Sciences
Funding text :
This work was supported by NIH grants to MAS: R01 HL135156, R01 MD010443, R01 HL128439, P01 HL132821, P01 HL107202, R01 HL117004, DOD Grant W81WH-16-2-0018; by NIH grants to JVF and SARP: HL080414, HL107202, HL109146, and HL146002; by NIH/NCCR grant to NR: S10 OD028538-01A1; and by NIH/NIHGMS grant to C.G.P.: R35 GM140815.
J.V. Fahy Type 2 inflammation in asthma–present in most, absent in many Nat. Rev. Immunol. 2015 15 57 65 1:CAS:528:DC%2BC2cXitFKltb7J
A. Wesolowska-Andersen M.A. Seibold Airway molecular endotypes of asthma: dissecting the heterogeneity Curr. Opin. Allergy Clin. Immunol. 2015 15 163 168 1:CAS:528:DC%2BC2MXos1Ojurw%3D
P.G. Woodruff et al. T-helper type 2-driven inflammation defines major subphenotypes of asthma Am. J. Respir. Crit. Care Med. 2009 180 388 395 1:CAS:528:DC%2BD1MXhtFOju7vI
S.P. Sajuthi et al. Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium Nat. Commun. 2020 11 2020NatCo.11.5139S 1:CAS:528:DC%2BB3cXitVOrtLjF
N.D. Jackson et al. Single-cell and population transcriptomics reveal pan-epithelial remodeling in type 2-high asthma Cell Rep. 2020 32 1:CAS:528:DC%2BB3cXhtlKnsbjP
M.C. Peters et al. A transcriptomic method to determine airway immune dysfunction in T2-high and T2-low asthma Am. J. Respir. Crit. Care Med 2019 199 465 477 1:CAS:528:DC%2BC1MXht1OhtrvL
A. Poole et al. Dissecting childhood asthma with nasal transcriptomics distinguishes subphenotypes of disease J. Allergy Clin. Immunol. 2014 133 670 678 e612 1:CAS:528:DC%2BC2cXhs1Knurw%3D
E.M. Dunican et al. Mucus plugs in patients with asthma linked to eosinophilia and airflow obstruction J. Clin. Invest. 2018 128 997 1009
L.R. Bonser L. Zlock W. Finkbeiner D.J. Erle Epithelial tethering of MUC5AC-rich mucus impairs mucociliary transport in asthma J. Clin. Invest. 2016 126 2367 2371
M.E. Lachowicz-Scroggins et al. Abnormalities in MUC5AC and MUC5B protein in airway mucus in asthma Am. J. Respir. Crit. Care Med. 2016 194 1296 1299 1:CAS:528:DC%2BC1cXhsVWju78%3D
D.A. Wesener et al. Recognition of microbial glycans by human intelectin-1 Nat. Struct. Mol. Biol. 2015 22 603 610 1:CAS:528:DC%2BC2MXhtFKrsrbM
S. Tsuji et al. Human intelectin is a novel soluble lectin that recognizes galactofuranose in carbohydrate chains of bacterial cell wall J. Biol. Chem. 2001 276 23456 23463 1:CAS:528:DC%2BD3MXltVWjsbg%3D
S.C. Kerr et al. Intelectin-1 is a prominent protein constituent of pathologic mucus associated with eosinophilic airway inflammation in asthma Am. J. Respir. Crit. Care Med. 2014 189 1005 1007
A.D. Pemberton M.J. Rose-Zerilli J.W. Holloway R.D. Gray S.T. Holgate A single-nucleotide polymorphism in intelectin 1 is associated with increased asthma risk J. Allergy Clin. Immunol. 2008 122 1033 1034 1:CAS:528:DC%2BD1cXhtlGgsrzJ
J.C. Barrett et al. Genome-wide association defines more than 30 distinct susceptibility loci for Crohn’s disease Nat. Genet. 2008 40 955 962 1:CAS:528:DC%2BD1cXptFSqs7k%3D
A. Franke et al. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn’s disease susceptibility loci Nat. Genet. 2010 42 1118 1125 1:CAS:528:DC%2BC3cXhsVGhsrzO
K.J. Travaglini et al. A molecular cell atlas of the human lung from single-cell RNA sequencing Nature 2020 587 619 625 2020Natur.587.619T 1:CAS:528:DC%2BB3cXitlOgs7rE
G. Xu G.G. Forstner J.F. Forstner Interaction of heparin with synthetic peptides corresponding to the C-terminal domain of intestinal mucins Glycoconj. J. 1996 13 81 90 1:CAS:528:DyaK28Xht1Sgsr4%3D
G. Xu S.L. Bell D. McCool J.F. Forstner The cationic C-terminus of rat Muc2 facilitates dimer formation post translationally and is subsequently removed by furin Eur. J. Biochem. 2000 267 2998 3004 1:CAS:528:DC%2BD3cXjs1GjsLw%3D
Sajuthi, S. P. et al. Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium. bioRxiv https://www.biorxiv.org/content/10.1101/2020.04.09.034454v1 (2020).
S.P. Sajuthi et al. Nasal airway transcriptome-wide association study of asthma reveals genetically driven mucus pathobiology Nat. Commun. 2022 13 2022NatCo.13.1632S 1:CAS:528:DC%2BB38Xos1Okuro%3D
M. Kesimer et al. Airway mucin concentration as a marker of chronic bronchitis N. Engl. J. Med. 2017 377 911 922 1:CAS:528:DC%2BC2sXhsFSju7nI
G. Radicioni et al. Airway mucin MUC5AC and MUC5B concentrations and the initiation and progression of chronic obstructive pulmonary disease: an analysis of the SPIROMICS cohort Lancet Respir. Med. 2021 9 1241 1254 1:CAS:528:DC%2BB3MXhvVOqur7E
E.B. Nonnecke et al. Human intelectin-1 (ITLN1) genetic variation and intestinal expression Sci. Rep. 2021 11 2021NatSR.1112889N 1:CAS:528:DC%2BB3MXhsF2iu7vN
N. Gu et al. Intelectin is required for IL-13-induced monocyte chemotactic protein-1 and -3 expression in lung epithelial cells and promotes allergic airway inflammation Am. J. Physiol. Lung Cell Mol. Physiol. 2010 298 L290 L296 1:CAS:528:DC%2BC3cXjsFGgtLg%3D
D.A. Kuperman et al. Dissecting asthma using focused transgenic modeling and functional genomics J. Allergy Clin. Immunol. 2005 116 305 311 1:CAS:528:DC%2BD2MXntVCru7g%3D
T. Watanabe et al. Expression of intelectin-1 in bronchial epithelial cells of asthma is correlated with T-helper 2 (Type-2) related parameters and its function Allergy Asthma Clin. Immunol. 2017 13 35
S. Yuan et al. Oxidation increases mucin polymer cross-links to stiffen airway mucus gels Sci. Transl. Med. 2015 7 276ra227
M. Tang et al. Mucus plugs persist in asthma, and changes in mucus plugs associate with changes in airflow over time Am. J. Respir. Crit. Care Med. 2022 205 1036 1045 1:CAS:528:DC%2BB38XhsVyqsbjN
A.M. Neophytou et al. Air pollution and lung function in minority youth with asthma in the GALA II (genes-environments and admixture in Latino Americans) and SAGE II (Study of African Americans, Asthma, Genes, and Environments) studies Am. J. Respir. Crit. Care Med. 2016 193 1271 1280 1:CAS:528:DC%2BC2sXmvVWisrs%3D
K.K. Nishimura et al. Early-life air pollution and asthma risk in minority children. The GALA II and SAGE II studies Am. J. Respir. Crit. Care Med. 2013 188 309 318
M. Yamaya W.E. Finkbeiner S.Y. Chun J.H. Widdicombe Differentiated structure and function of cultures from human tracheal epithelium Am. J. Physiol. 1992 262 L713 L724 1:CAS:528:DyaK38Xmt12ms74%3D
S.D. Reynolds et al. Airway progenitor clone formation is enhanced by Y-27632-dependent changes in the transcriptome Am. J. Respir. Cell Mol. Biol. 2016 55 323 336 1:CAS:528:DC%2BC28Xhsl2nsbvP
J.L. Everman C. Rios M.A. Seibold Utilization of air-liquid interface cultures as an in vitro model to assess primary airway epithelial cell responses to the type 2 cytokine interleukin-13 Methods Mol. Biol. 2018 1799 419 432 1:CAS:528:DC%2BC1MXpvF2ntLk%3D
M.E. Kotas et al. IL-13-programmed airway tuft cells produce PGE2, which promotes CFTR-dependent mucociliary function JCI Insight 2022 7 e159832
Q. Yu et al. Benchmarking the orbitrap tribrid eclipse for next generation multiplexed proteomics Anal. Chem. 2020 92 6478 6485 1:CAS:528:DC%2BB3cXmtl2nurs%3D
A.M. Newman et al. Determining cell type abundance and expression from bulk tissues with digital cytometry Nat. Biotechnol. 2019 37 773 782 1:CAS:528:DC%2BC1MXptFGqsLk%3D
H.W. Chu et al. CRISPR-Cas9-mediated gene knockout in primary human airway epithelial cells reveals a proinflammatory role for MUC18 Gene Ther. 2015 22 822 829 1:CAS:528:DC%2BC2MXhs1eksr%2FN
J.L. Everman C. Rios M.A. Seibold Primary airway epithelial cell gene editing using CRISPR-Cas9 Methods Mol. Biol. 2018 1706 267 292 1:CAS:528:DC%2BC1cXhvFCnsL%2FN
D. Conant et al. Inference of CRISPR edits from sanger trace data CRISPR J. 2022 5 123 130 1:CAS:528:DC%2BB38XktlOnsb8%3D
Allan D. B. et al. soft-matter/trackpy: Trackpy v0.5.0 (v0.5.0) https://zenodo.org/records/4682814 (2021).
A. Kuznetsova P.B. Brockhoff R.H.B. Christensen lmerTest package: tests in linear mixed effects models J. Stat. Softw. 2017 82 1 26
M. Chioccioli et al. Quantitative high-speed video profiling discriminates between DNAH11 and HYDIN variants of primary ciliary dyskinesia Am. J. Respir. Crit. Care Med. 2019 199 1436 1438
L. Feriani et al. Assessing the collective dynamics of motile cilia in cultures of human airway cells by multiscale DDM Biophys. J. 2017 113 109 119 2017BpJ..113.109F 1:CAS:528:DC%2BC2sXpslWnsb0%3D
L. Royle et al. Glycan structures of ocular surface mucins in man, rabbit and dog display species differences Glycoconj. J. 2008 25 763 773 1:CAS:528:DC%2BD1cXht1equrbF
V.A. Traag L. Waltman N.J. van Eck From Louvain to Leiden: guaranteeing well-connected communities Sci. Rep. 2019 9 2019NatSR..9.5233T 1:STN:280:DC%2BB3cbosVGisQ%3D%3D
H. Jiang R. Lei S.W. Ding S. Zhu Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads BMC Bioinformatics 2014 15
T.D. Wu S. Nacu Fast and SNP-tolerant detection of complex variants and splicing in short reads Bioinformatics 2010 26 873 881 1:CAS:528:DC%2BC3cXjvFyktLs%3D
S. Anders P.T. Pyl W. Huber HTSeq–a Python framework to work with high-throughput sequencing data Bioinformatics 2015 31 166 169 1:CAS:528:DC%2BC28Xht1Sjt7vL
N.L. Bray H. Pimentel P. Melsted L. Pachter Near-optimal probabilistic RNA-seq quantification Nat. Biotechnol. 2016 34 525 527 1:CAS:528:DC%2BC28XlsVansL8%3D
M.I. Love W. Huber S. Anders Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Genome Biol. 2014 15
L.D. Consortium GT Coordinating center-analysis working G, statistical methods groups-analysis working G, enhancing Gg, Fund NIHC, et al. Genetic effects on gene expression across human tissues Nature 2017 550 204 213
M.D. Robinson D.J. McCarthy G.K. Smyth edgeR: a Bioconductor package for differential expression analysis of digital gene expression data Bioinformatics 2010 26 139 140 1:CAS:528:DC%2BD1MXhs1WlurvO
D.J. McCarthy Y. Chen G.K. Smyth Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation Nucleic Acids Res. 2012 40 4288 4297 1:CAS:528:DC%2BC38XnsF2ks74%3D
O. Stegle L. Parts M. Piipari J. Winn R. Durbin Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses Nat. Protoc. 2012 7 500 507 1:CAS:528:DC%2BC38XivVChu7s%3D
D.H. Alexander J. Novembre K. Lange Fast model-based estimation of ancestry in unrelated individuals Genome Res. 2009 19 1655 1664 1:CAS:528:DC%2BD1MXhtFCjsLvL
H. Ongen A. Buil A.A. Brown E.T. Dermitzakis O. Delaneau Fast and efficient QTL mapper for thousands of molecular phenotypes Bioinformatics 2016 32 1479 1485 1:CAS:528:DC%2BC28XhsVGnt73E
O. Delaneau et al. A complete tool set for molecular QTL discovery and analysis Nat. Commun. 2017 8 2017NatCo..815452D 1:CAS:528:DC%2BC2sXotFyisrk%3D
N.H. Gershman H.H. Wong J.T. Liu M.J. Mahlmeister J.V. Fahy Comparison of two methods of collecting induced sputum in asthmatic subjects Eur. Respir. J. 1996 9 2448 2453 1:STN:280:DyaK2s7jsFCitw%3D%3D
M.C. Peters et al. Refractory airway type 2 inflammation in a large subgroup of asthmatic patients treated with inhaled corticosteroids J. Allergy Clin. Immunol. 2019 143 104 113.e114 1:CAS:528:DC%2BC1cXosFygurw%3D
M.C. Peters et al. Measures of gene expression in sputum cells can identify TH2-high and TH2-low subtypes of asthma J. Allergy Clin. Immunol. 2014 133 388 394 1:CAS:528:DC%2BC3sXhsFemtr7J
J.C. Cardet et al. Clinical and molecular implications of RGS2 promoter genetic variation in severe asthma J. Allergy Clin. Immunol. 2022 150 721 726.e1 1:CAS:528:DC%2BB38XhvVGntrzL
D. Kim B. Langmead S.L. Salzberg HISAT: a fast spliced aligner with low memory requirements Nat. Methods 2015 12 357 360 1:CAS:528:DC%2BC2MXjvFOnsL0%3D