X.H. Ye et al. A chromosome-level genome assembly of the parasitoid wasp Pteromalus puparum Mol Ecol Resour. 2020 20 1384 1402 32562592
Y.W. Zhong et al. A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati Sci Data. 2023 10 37673910 10482854
O. Charles A review of management of major arthropod pests affecting cassava production in Sub-Saharan Africa Crop Prot. 2024 175 1 15
K. Katono et al. Effect of Bemisia tabaci SSA1 host density and cassava genotype on host feeding capacity and parasitism by two Hymenoptera parasitoid species Biocontrol Sci Technol. 2022 33 19 34
R. Caspary et al. Cutting Dipping Application of Flupyradifurone against Cassava Whiteflies Bemisia tabaci and Impact on Its Parasitism in Cassava Insects. 2023 14 796 37887808 10607024
G.H. Walter Divergent male ontogenies in Aphelinidae (Hymenoptera, Chalcidoidea): A simplified classification and a suggested evolutionary sequence Biol. J. Linn. Soc. Lond. 1983 19 63 82
N.J. Mills et al. Prospective modelling in biological control: An analysis of the dynamics of heteronomous hyperparasitism in a cotton-whitefly-parasitoid system J Appl Ecol. 1996 33 1379 1394
T. Williams Invasion and displacement of experimental populations of a conventional parasitoid by a heteronomous hyperparasitoid Biocontrol Sci Technol. 1996 6 603 618
M.S. Hunter et al. Evolution and behavioral ecology of heteronomous aphelinid parasitoids Annu. Rev. Entomol. 2001 46 251 290 11112170
N.W. Yang et al. Shifting preference between oviposition vs. host-feeding under changing host densities in two aphelinid parasitoids PLoS One. 2012 7 2012PLoSO..741189Y 22815964 3398901
H.Y. Xu et al. Competitive interactions between parasitoids provide new insight into host suppression PLoS One. 2013 8 2013PLoSO..882003X 24312394 3842984
C. Kingsford A fast, lock-free approach for efficient parallel counting of occurrences of k-mers Bioinformatics. 2011 27 764 21217122 3051319
H. Cheng et al. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm Nat. Methods. 2021 18 1 6
H. Belaghzal et al. Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation Methods 2017 123 56 65 28435001 5522765
X. Zhang et al. Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data Nat. Plants. 2019 5 833 845 31383970
M. Manni et al. BUSCO Update: Novel and streamlined workfows along with broader and deeper phylogenetic coverage for scoring of Eukaryotic, Prokaryotic, and Viral genomes Mol. Biol. Evol. 2021 38 4647 4654 34320186 8476166
P. Genis et al. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes Bioinformatics 2007 23 1061 1067
B. Langmead et al. Fast gapped-read alignment with Bowtie 2 Nat. Methods. 2012 9 357 359 22388286 3322381
H.A. Li statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data Bioinformatics. 2011 27 2987 2993 21903627 3198575
S. Koren et al. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation Genome Res. 2017 27 722 736 28298431 5411767
A. Rhie et al. Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies Genome Biol. 2020 21 32928274 7488777
G. Benson Tandem repeats finder: a program to analyze DNA sequences Nucleic Acids Res. 1999 27 573 580 9862982 148217
W. Bao et al. Repbase Update, a database of repetitive elements in eukaryotic genomes Mob. DNA. 2015 6 26045719 4455052
M. Tarailo-Graovac et al. Using RepeatMasker to identify repetitive elements in genomic sequences Curr Protoc Bioinformatics 2009 4 10
Z. Xu et al. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons Nucleic Acids Res. 2007 35 265 268
J.M. Flynn et al. RepeatModeler2 for automated genomic discovery of transposable element families Proc Natl Acad Sci USA 2020 117 9451 9457 2020PNAS.117.9451F 32300014 7196820
Y. Mei et al. InsectBase 2.0: a comprehensive gene resource for insects Nucleic Acids Res. 2022 50 D1040 D1045 2022gffa.book...M 34792158
M. Stanke et al. AUGUSTUS: ab initio prediction of alternative transcripts Nucleic Acids Res. 2006 34 W435 439 16845043 1538822
W.H. Majoros et al. TigrScan and GlimmerHMM: two open-source ab initio eukaryotic gene-finders Bioinformatics 2004 20 2878 2879 15145805
I. Korf Gene fnding in novel genomes BMC Bioinformatics 2004 5 15144565 421630
C. Camacho et al. BLAST+: architecture and applications BMC Bioinformatics 2009 10 20003500 2803857
E. Birney et al. GeneWise and Genomewise Genome Res. 2004 14 988 995 15123596 479130
P.J.A. Cock et al. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants Nucleic Acids Res. 2010 38 1767 1771 2010mota.book...C 20015970
A.M. Bolger et al. Trimmomatic: a fexible trimmer for Illumina sequence data Bioinformatics 2014 30 2114 2120 24695404 4103590
D. Kim et al. HISAT: a fast spliced aligner with low memory requirements Nat. Methods. 2015 12 357 360 25751142 4655817
M. Pertea et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads Nat. Biotechnol. 2015 33 290 295 25690850 4643835
B.J. Haas et al. Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments Genome Biol. 2008 9 18190707 2395244
P. Jones et al. InterProScan 5: genome-scale protein function classifcation Bioinformatics 2014 30 1236 1240 24451626 3998142
A. Bairoch et al. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 Nucleic Acids Res. 2000 28 45 48 10592178 102476
M. Kanehisa et al. KEGG: kyoto encyclopedia of genes and genomes Nucleic Acids Res. 2000 28 27 30 10592173 102409
X. Man Genome assembly and annotation files of Encarsia sophia 2024 10.6084/m9.figshare.26426752 figshare
P.P. Chan et al. tRNAscan-SE 2.0: improved detection and functional classifcation of transfer RNA genes Nucleic Acids. Res. 2021 49 9077 9096 34417604 8450103
I. Kalvari et al. Rfam 14: expanded coverage of metagenomic, viral and microRNA families Nucleic Acids. Res. 2021 49 D192 D200 33211869
