Article (Scientific journals)
Intrinsic Disorder and Salt-dependent Conformational Changes of the N-terminal TFIP11 Splicing Factor
Juniku, Blinera; Mignon, Julien; Genco, Alexia et al.
2024In ACS Omega
Editorial reviewed
 

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Abstract :
[en] AbstractTuftelin Interacting Protein 11 (TFIP11) was recently identified as a critical human spliceosome assembly regulator. Indeed, it is involved in many biological functions including the interaction with multiple spliceosome key proteins and its localisation in several membrane-less organelles. However, there is a lack of structural information on TFIP11, which limits the rationalisation of its biological role. TFIP11 has been predicted as a highly disordered protein, and specifically concerning its N-terminal (N-TER) region. Intrinsically disordered proteins (IDPs) lack a defined tertiary structure, existing as a dynamic conformational ensemble, which favours their role as hubs in protein-protein and protein-RNA interaction networks. Furthermore, IDPs are involved in liquid-liquid phase separation (LLPS) which drives the formation of subnuclear compartments. In this study, we have refined the disorder prediction of TFIP11 N-TER region and subsequently performed all-atom molecular dynamics (MD) simulations to assess its conformational flexibility and the interplay between their different N-TER domains. We further confirm that TFIP11 may be described as a polyampholyte IDP with a flexible conformation. Furthermore, since LLPS formation and IDP conformational changes are salt-dependent phenomena we have investigated by MD simulations the influence of salt concentration in shaping the conformational ensemble of the N-TER region of TFIP11. Increasing the salt concentration enhances the flexibility of the TFIP11 N-TER conformation, which presents a fuzzier conformational landscape, a more globular shape, and an unstructured arrangement that could favor LLPS segregation and protein-RNA interaction.
Disciplines :
Anatomy (cytology, histology, embryology...) & physiology
Author, co-author :
Juniku, Blinera
Mignon, Julien
Genco, Alexia ;  Université de Liège - ULiège > Département des sciences biomédicales et précliniques
Obeid, Anna Maria  ;  Université de Liège - ULiège > Département des sciences biomédicales et précliniques
Mottet, Denis ;  Université de Liège - ULiège > Département des sciences biomédicales et précliniques
Monari, Antonio 
Michaux, Catherine
Language :
English
Title :
Intrinsic Disorder and Salt-dependent Conformational Changes of the N-terminal TFIP11 Splicing Factor
Publication date :
21 February 2024
Journal title :
ACS Omega
eISSN :
2470-1343
Publisher :
American Chemical Society, Washington DC, United States - Washington
Peer reviewed :
Editorial reviewed
Available on ORBi :
since 24 April 2024

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