[en] The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.
Disciplines :
Engineering, computing & technology: Multidisciplinary, general & others Neurology
Author, co-author :
Poldrack, Russell A.; Department of Psychology, Stanford University, Stanford, CA, United States
Markiewicz, Christopher J.; Department of Psychology, Stanford University, Stanford, CA, United States
Appelhoff, Stefan; Max Planck Institute for Human Development, Berlin, Germany
Ashar, Yoni K.; University of Colorado Anschutz Medical Campus, Aurora, CO, United States
Auer, Tibor; School of Psychology, University of Surrey, Guildford, United Kingdom ; Artificial Intelligence and Informatics Group, Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom
Baillet, Sylvain; McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada
Bansal, Shashank; Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States
Beltrachini, Leandro; Cardiff University Brain Research Imaging Centre (CUBRIC), School of Physics and Astronomy, Cardiff University, Wales, United Kingdom
Benar, Christian G.; Aix Marseille Université, INSERM, INS, Inst Neurosci Syst, Marseille, France
Bertazzoli, Giacomo; Neurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy ; Center for Mind/Brain Sciences - CIMeC, University of Trento, Rovereto, TN, Italy ; Brigham and Women’s Hospital, Boston, MA, United States ; Massachusetts General Hospital, Boston, MA, United States ; Harvard Medical School, Boston, MA, United States
Bhogawar, Suyash; Rackspace Technology, San Antonio, TX, United States
Blair, Ross W.; Department of Psychology, Stanford University, Stanford, CA, United States
Bortoletto, Marta; Neurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy
Brooks, Teon L.; Department of Psychology, Stanford University, Stanford, CA, United States
Calhoun, Vince D.; Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory, Atlanta, GA, United States
Castelli, Filippo Maria; European Laboratory for Non-Linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino, Italy ; Bioretics srl, Cesena, Italy
Clement, Patricia; Department of Medical Imaging, Ghent University Hospital, Ghent, Belgium ; Department of Diagnostic Sciences, Ghent University, Ghent, Belgium
Cohen, Alexander L.; Department of Neurology, Boston Children’s Hospital, Boston, MA, United States
D’Ambrosio, Sasha; Department of Health Sciences, Università degli Studi di Milano, Milan, Italy ; Department of Clinical and Experimental Epilepsy, University College London, London, United Kingdom
de Hollander, Gilles; Zurich Center for Neuroeconomics, Department of Economics, University of Zurich, Zurich, Switzerland
de la Iglesia-Vayá, María; Center for Biomedical Research in Mental Health Network (CIBERSAM), UMIB-FISABIO, Valencia, Spain
de la Vega, Alejandro; The University of Texas at Austin, Austin, TX, United States
Delorme, Arnaud; SCCN, University of California, San Diego, La Jolla, CA, United States
Devinsky, Orrin; Department of Neurology, NYU Langone Medical Center, New York, NY, United States
Draschkow, Dejan; Department of Experimental Psychology, University of Oxford, Oxford, United Kingdom
Duff, Eugene Paul; UK Dementia Research Institute, Department of Brain Sciences, Imperial College London, London, United Kingdom
DuPre, Elizabeth; Department of Psychology, Stanford University, Stanford, CA, United States
Earl, Eric; Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States
Esteban, Oscar; Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
Feingold, Franklin W.; Department of Psychology, Stanford University, Stanford, CA, United States
Flandin, Guillaume; Wellcome Centre for Human Neuroimaging, University College London, London, England, United Kingdom
Galassi, Anthony; Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States
Gallitto, Giuseppe; Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany ; Department of Neurology, University Medicine Essen, Essen, Germany
Ganz, Melanie; Department of Computer Science, University of Copenhagen, Copenhagen, Denmark ; Neurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark
Gau, Rémi; Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada
Gholam, James; Cardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Wales, United Kingdom
Ghosh, Satrajit S.; Massachusetts Institute of Technology, Cambridge, MA, United States
Giacomel, Alessio; Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, England, United Kingdom
Gillman, Ashley G.; The Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Townsville, Queensland, Australia
Gleeson, Padraig; Department of Neuroscience, Physiology and Pharmacology, University College London, London, England, United Kingdom
Gramfort, Alexandre; Inria, CEA, Université Paris-Saclay, Palaiseau, France
Guay, Samuel; Université de Montréal, Montréal, QC, Canada
Guidali, Giacomo; Department of Psychology & NeuroMI - Milan Centre for Neuroscience, University of Milano-Bicocca, Milan, Italy
Halchenko, Yaroslav O.; Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, United States
Handwerker, Daniel A.; Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States
Hardcastle, Nell; Department of Psychology, Stanford University, Stanford, CA, United States
Herholz, Peer; Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada
Hermes, Dora; Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, United States
Honey, Christopher J.; Department of Psychological & Brain Sciences, Johns Hopkins University, Baltimore, MD, United States
Innis, Robert B.; Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States
Ioanas, Horea-Ioan; Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, United States
Jahn, Andrew; Functional MRI Laboratory, University of Michigan, Ann Arbor, MI, United States
Keator, David B.; Change Your Brain Change Your Life Foundation, Costa Mesa, CA, United States ; Amen Clinics, Costa Mesa, CA, United States ; Department of Psychiatry and Human Behavior, School of Medicine, University of California, Irvine, CA, United States
Kiar, Gregory; Center for Data Analytics, Innovation, and Rigor, Child Mind Institute, New York, NY, United States
Kincses, Balint; Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany ; Department of Neurology, University Medicine Essen, Essen, Germany
Laird, Angela R.; Department of Physics, Florida International University, Miami, FL, United States
Lau, Jonathan C.; Department of Clinical Neurological Sciences, Western University, London, Ontario, Canada
Lazari, Alberto; Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom
Legarreta, Jon Haitz; Department of Radiology, Brigham and Women’s Hospital, Mass General Brigham/Harvard Medical School, Boston, MA, United States
Li, Adam; Columbia University, New York, NY, United States
Li, Xiangrui; Center for Cognitive and Behavioral Brain Imaging, The Ohio State University, Columbus, OH, United States
Love, Bradley C.; University College London, London, United Kingdom
Lu, Hanzhang; Johns Hopkins University School of Medicine, Baltimore, MD, United States
Marcantoni, Eleonora; School for Psychology and Neuroscience and Centre for Cognitive Neuroimaging, University of Glasgow, Glasgow, Scotland
Maumet, Camille; Inria, Univ Rennes, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U 1228, Rennes, France
Mazzamuto, Giacomo; National Research Council - National Institute of Optics (CNR-INO), Florence, Italy
Meisler, Steven L.; Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA, United States
Mikkelsen, Mark; Department of Radiology, Weill Cornell Medicine, New York, NY, United States
Mutsaerts, Henk; Radiology and Nuclear Medicine, Vrije Universiteit Amsterdam, Amsterdam UMC location VUmc, Amsterdam, The Netherlands ; Amsterdam Neuroscience, Brain Imaging, Amsterdam, The Netherlands
Nichols, Thomas E.; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, United Kingdom
Nikolaidis, Aki; Center for the Developing Brain, Child Mind Institute, New York, NY, United States
Nilsonne, Gustav; Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden ; Swedish National Data Service, Gothenburg University, Gothenburg, Sweden
Niso, Guiomar; Instituto Cajal, CSIC, Madrid, Spain
Norgaard, Martin; Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States ; Department of Computer Science, University of Copenhagen, Copenhagen, Denmark
Okell, Thomas W.; Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom
Oostenveld, Robert; Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands ; NatMEG, Karolinska Institutet, Stockholm, Sweden
Ort, Eduard; Department of Biological Psychology of Decision Making, Heinrich Heine University, Düsseldorf, Germany
Park, Patrick J.; Western University, London, Ontario, Canada
Pawlik, Mateusz; Paris-Lodron-University of Salzburg, Department of Psychology, Centre for Cognitive Neuroscience, Salzburg, Austria
Pernet, Cyril R.; Neurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark
Pestilli, Franco; The University of Texas at Austin, Austin, TX, United States
Petr, Jan; Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Dresden, Germany
Phillips, Christophe ; Université de Liège - ULiège > GIGA > GIGA CRC In vivo Imaging - Neuroimaging, data acquisition and processing
Poline, Jean-Baptiste; Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada
Pollonini, Luca; Department of Engineering Technology, University of Houston, Houston, TX, United States ; Basque Center on Cognition, Brain and Language, Donostia-San Sebastián, Spain
Raamana, Pradeep Reddy; University of Pittsburgh, Pittsburgh, PA, United States
Ritter, Petra; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany ; Department of Neurology with Experimental Neurology, Charité, Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany ; Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience, Berlin, Germany ; Einstein Center for Neuroscience Berlin, Berlin, Germany ; Einstein Center Digital Future, Berlin, Germany
Rizzo, Gaia; Invicro, London, United Kingdom ; Division of Brain Sciences, Imperial College London, London, United Kingdom
Robbins, Kay A.; Department of Computer Science, University of Texas at San Antonio, San Antonio, TX, United States
Rockhill, Alexander P.; Department of Neurosurgery, Oregon Health & Science University, Portland, OR, United States
Rogers, Christine; McGill Centre for Integrative Neuroscience (MCIN), Montréal Neurological Institute, McGill University, Montréal, QC, Canada
Rokem, Ariel; Department of Psychology and eScience Institute, University of Washington, Seattle, WA, United States
Rorden, Chris; Department of Psychology, University of South Carolina, Columbia, SC, United States
Routier, Alexandre; Inria, Institut du Cerveau - Paris Brain Institute, Paris, France
Saborit-Torres, Jose Manuel; Center for Biomedical Research in Mental Health Network (CIBERSAM), UMIB-FISABIO, Valencia, Spain
Salo, Taylor; Lifespan Informatics and Neuroimaging Center (PennLINC), Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Lifespan Brain Institute (LiBI) of Penn Medicine and Children’s Hospital of Philadelphia (CHOP), Philadelphia, PA, United States
Schirner, Michael; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany ; Department of Neurology with Experimental Neurology, Charité, Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany ; Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience, Berlin, Germany ; Einstein Center for Neuroscience Berlin, Berlin, Germany ; Einstein Center Digital Future, Berlin, Germany
Smith, Robert E.; The Florey Institute of Neuroscience and Mental Health, Heidelberg, Victoria, Australia ; The Florey Department of Neuroscience and Mental Heath, The University of Melbourne, Parkville, Victoria, Australia
Spisak, Tamas; Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany ; Institute for Diagnostic and Interventional Radiology and Neuroradiology, University Medicine Essen, Essen, Germany
Sprenger, Julia; Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France
Swann, Nicole C.; Department of Human Physiology, University of Oregon, Eugene, OR, United States
Szinte, Martin; Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France
Takerkart, Sylvain; Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France
Thirion, Bertrand; Inria, CEA, Université Paris-Saclay, Palaiseau, France
Thomas, Adam G.; Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States
Torabian, Sajjad; University of California, Irvine, CA, United States
Varoquaux, Gael; Inria, Université Paris Saclay, Saclay, France
Voytek, Bradley; Department of Cognitive Science, Halıcıoğlu Data Science Institute, and Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States
Welzel, Julius; Kiel University, Kiel, Germany
Wilson, Martin; Centre for Human Brain Health and School of Psychology, University of Birmingham, Birmingham, United Kingdom
Yarkoni, Tal; Google X. Mountain View, CA, United States
Gorgolewski, Krzysztof J.; Department of Psychology, Stanford University, Stanford, CA, United States
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