HPV integration; NGS - next generation sequencing; SCCA; Somatic mutation analysis; TERT promoter mutation; Oncology; Cancer Research
Abstract :
[en] Squamous Cell Carcinoma of the Anal canal (SCCA) is a rare disease associated with a Human Papillomavirus (HPV) infection in most cases, predominantly the HPV16 genotype. About 15% of SCCA are diagnosed in metastatic stage and some will relapse after initial chemoradiotherapy (CRT). Treatment of patients by Docetaxel, Cisplatin and 5-fluorouracil (DCF) has been recently shown to improve their complete remission and progression-free survival. The aim of this retrospective study was to explore the impact of HPV infection, HPV DNA integration, TERT promoter mutational status and somatic mutations of oncogenes on both progression-free (PFS) and overall survivals (OS) of patients treated by DCF. Samples obtained from 49 patients included in the Epitopes-HPV02 clinical trial, diagnosed with metastatic or non-resectable local recurrent SCCA treated by DCF, were used for analyses. Median PFS and OS were not associated with HPV status. Patients with episomal HPV had an improved PFS compared with SCCA patients with integrated HPV genome (p=0.07). TERT promoter mutations were rarely observed and did not specifically distribute in a subset of SCCA and did not impact DCF efficacy. Among the 42 genes investigated, few gene alterations were observed, and were in majority amplifications (68.4%), but none were significantly correlated to PFS. As no biomarker is significantly associated with patients' survival, it prompts us to include every patient failing CRT or with metastatic disease in DCF strategy.
Disciplines :
Oncology
Author, co-author :
Debernardi, Alice; EA3181, University of Bourgogne Franche-Comté, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France
Meurisse, Aurélia; Methodology and Quality of Life in Oncology Unit, University Hospital of Besançon, Besançon, France ; INSERM, EFS BFC, UMR1098 RIGHT, University of Bourgogne Franche-Comté, Besançon, France
Prétet, Jean-Luc; EA3181, University of Bourgogne Franche-Comté, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France ; Papillomavirus National Reference Center, University Hospital, Besançon, France
Guenat, David; EA3181, University of Bourgogne Franche-Comté, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France ; Molecular Biology and Microbiology Department, Anamed SA Laboratory, Lausanne, Switzerland
Monnien, Franck; Department of Pathology, University Hospital of Besançon, Besançon, France
Spehner, Laurie; INSERM, EFS BFC, UMR1098 RIGHT, University of Bourgogne Franche-Comté, Besançon, France ; Department of Medical Oncology, University Hospital of Besançon, Besançon, France
Vienot, Angélique; INSERM, EFS BFC, UMR1098 RIGHT, University of Bourgogne Franche-Comté, Besançon, France ; Department of Medical Oncology, University Hospital of Besançon, Besançon, France
RONCARATI, Patrick ; Centre Hospitalier Universitaire de Liège - CHU > > Service d'anatomie et cytologie pathologiques
André, Thierry; Department of Medical Oncology, University Hospital Saint Antoine, Paris, France
Abramowitz, Laurent; Division of Gastroenterology and Hepatology and Proctology, University Hospital Bichat, Paris, France ; Ramsay GDS, Blomet Clinic, Paris, France
Molimard, Chloé; Department of Anatomopathology, University Hospital of Besançon, Besançon, France
Mougin, Christiane; INSERM, EFS BFC, UMR1098 RIGHT, University of Bourgogne Franche-Comté, Besançon, France ; Papillomavirus National Reference Center, University Hospital, Besançon, France
Herfs, Michael ; Université de Liège - ULiège > Département des sciences biomédicales et précliniques
Kim, Stefano; INSERM, EFS BFC, UMR1098 RIGHT, University of Bourgogne Franche-Comté, Besançon, France ; Clinical investigation center, CIC-1403 University Hospital of Besançon, Besançon, France ; Department of Medical Oncology, Sanatorio Allende, Cordoba, Argentina
Borg, Christophe; INSERM, EFS BFC, UMR1098 RIGHT, University of Bourgogne Franche-Comté, Besançon, France ; Molecular Biology and Microbiology Department, Anamed SA Laboratory, Lausanne, Switzerland ; Clinical investigation center, CIC-1403 University Hospital of Besançon, Besançon, France
Part of this work was funded by the Région Franche-Comté and the Belgian Fund for Scientific Research (FNRS; MIS F.4520.20).CB has received a research grant from companies Bayer and Roche, and was an advisory board member of Bayer, MSD and Pierre Fabre companies. None of them had a role in the study design, analysis, or interpretation of the results.
Siegel RL Miller KD Jemal A. Cancer statistics, 2018. CA Cancer J Clin (2018) 68(1):7−30. doi: 10.3322/caac.21442
Sung H Ferlay J Siegel RL Laversanne M Soerjomataram I Jemal A et al. Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin (2021) 71(3):209−49. doi: 10.3322/caac.21660
Islami F Ferlay J Lortet-Tieulent J Bray F Jemal A. International trends in anal cancer incidence rates. Int J Epidemiol (2017) 46(3):924−38. doi: 1093/ije/dyw276
Ghosn M Kourie HR Abdayem P Antoun J Nasr D. Anal cancer treatment: current status and future perspectives. World J Gastroenterol (2015) 21(8):2294−302. doi: 10.3748/wjg.v21.i8.2294
Gunderson LL Winter KA Ajani JA Pedersen JE Moughan J Benson AB et al. Long-term update of US GI intergroup RTOG 98-11 phase III trial for anal carcinoma: Survival, relapse, and colostomy failure with concurrent chemoradiation involving Fluorouracil/Mitomycin versus Fluorouracil/Cisplatin. J Clin Oncol (2012) 30(35):4344−51. doi: 10.1200/JCO.2012.43.8085
James RD Glynne-Jones R Meadows HM Cunningham D Myint AS Saunders MP et al. Mitomycin or cisplatin chemoradiation with or without maintenance chemotherapy for treatment of squamous-cell carcinoma of the anus (ACT II): a randomised, phase 3, open-label, 2 × 2 factorial trial. Lancet Oncol (2013) 14(6):516−24. doi: 10.1016/S1470-2045(13)70086-X
Peiffert D Tournier-Rangeard L Gérard JP Lemanski C François E Giovannini M et al. Induction chemotherapy and dose intensification of the radiation boost in locally advanced anal canal carcinoma: final analysis of the randomized UNICANCER ACCORD 03 trial. J Clin Oncol (2012) 30(16):1941−8. doi: 10.1200/JCO.2011.35.4837
Faivre C Rougier P Ducreux M Mitry E Lusinchi A Lasser P et al. [5-fluorouracile and cisplatinum combination chemotherapy for metastatic squamous-cell anal cancer]. Bull Cancer (1999) 86(10):861−5.
Eng C Chang GJ You YN Das P Rodriguez-Bigas M Xing Y et al. The role of systemic chemotherapy and multidisciplinary management in improving the overall survival of patients with metastatic squamous cell carcinoma of the anal canal. Oncotarget (2014) 5(22):11133−42. doi: 10.18632/oncotarget.2563
Sclafani F Morano F Cunningham D Baratelli C Kalaitzaki E Watkins D et al. Platinum-fluoropyrimidine and paclitaxel-based chemotherapy in the treatment of advanced anal cancer patients. Oncologist (2017) 22(4):402−8. doi: 10.1634/theoncologist.2016-0241
Wahl AF Donaldson KL Fairchild C Lee FY Foster SA Demers GW et al. Loss of normal p53 function confers sensitization to taxol by increasing G2/M arrest and apoptosis. Nat Med (1996) 2(1):72−9. doi: 10.1038/nm0196-72
Kim S Jary M Mansi L Benzidane B Cazorla A Demarchi M et al. DCF (docetaxel, cisplatin and 5-fluorouracil) chemotherapy is a promising treatment for recurrent advanced squamous cell anal carcinoma. Ann Oncol (2013) 24(12):3045−50. doi: 10.1093/annonc/mdt396
Senovilla L Vitale I Martins I Tailler M Pailleret C Michaud M et al. An immunosurveillance mechanism controls cancer cell ploidy. Science (2012) 337(6102):1678−84. doi: 10.1126/science.1224922
Kim S François E André T Samalin E Jary M El Hajbi F et al. Docetaxel, cisplatin, and fluorouracil chemotherapy for metastatic or unresectable locally recurrent anal squamous cell carcinoma (Epitopes-HPV02): a multicentre, single-arm, phase 2 study. Lancet Oncol (2018) 19(8):1094−106. doi: 10.1016/S1470-2045(18)30321-8
Kim S Jary M André T Vendrely V Buecher B François E et al. Docetaxel, cisplatin, and 5-fluorouracil (DCF) chemotherapy in the treatment of metastatic or unresectable locally recurrent anal squamous cell carcinoma: a phase II study of French interdisciplinary GERCOR and FFCD groups (Epitopes-HPV02 study). BMC Cancer (2017) 17(1):574. doi: 10.1186/s12885-017-3566-0
Kim S Meurisse A Spehner L Stouvenot M François E Buecher B et al. Pooled analysis of 115 patients from updated data of epitopes-HPV01 and epitopes-HPV02 studies in first-line advanced anal squamous cell carcinoma. Ther Adv Med Oncol (2020) 12:175883592097535. doi: 10.1177/1758835920975356
Abramowitz L Jacquard AC Jaroud F Haesebaert J Siproudhis L Pradat P et al. Human papillomavirus genotype distribution in anal cancer in France: the EDiTH V study. Int J Cancer (2011) 129(2):433−9. doi: 10.1002/ijc.25671
Bretagne CH Jooste V Guenat D Riethmuller D Bouvier AM Bedgedjian I et al. Prevalence and distribution of HPV genotypes and cervical-associated lesions in sexually active young French women following HPV vaccine. J Gynecol Obstetrics Hum Reproduction (2018) 47(10):525−31. doi: 10.1016/j.jogoh.2018.05.011
Nagao S Yoshinouchi M Miyagi Y Hongo A Kodama J Itoh S et al. Rapid and sensitive detection of physical status of human papillomavirus type 16 DNA by quantitative real-time PCR. J Clin Microbiol (2002) 40(3):863−7. doi: 10.1128/JCM.40.3.863-867.2002
Cricca M Morselli-Labate AM Venturoli S Ambretti S Gentilomi GA Gallinella G et al. Viral DNA load, physical status and E2/E6 ratio as markers to grade HPV16 positive women for high-grade cervical lesions. Gynecol Oncol (2007) 106(3):549−57. doi: 10.1016/j.ygyno.2007.05.004
Ye J Coulouris G Zaretskaya I Cutcutache I Rozen S Madden TL. Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinf (2012) 13:134. doi: 10.1186/1471-2105-13-134
Liu X Yuan H Fu B Disbrow GL Apolinario T Tomaić V et al. The E6AP ubiquitin ligase is required for transactivation of the hTERT promoter by the human papillomavirus E6 oncoprotein*. J Biol Chem (2005) 280(11):10807−16. doi: 10.1074/jbc.M410343200
Serup-Hansen E Linnemann D Skovrider-Ruminski W Høgdall E Geertsen PF Havsteen H. Human papillomavirus genotyping and p16 expression as prognostic factors for patients with American joint committee on cancer stages I to III carcinoma of the anal canal. J Clin Oncol (2014) 32(17):1812−7. doi: 10.1200/JCO.2013.52.3464
Meulendijks D Tomasoa NB Dewit L Smits PHM Bakker R van Velthuysen MLF et al. HPV-negative squamous cell carcinoma of the anal canal is unresponsive to standard treatment and frequently carries disruptive mutations in TP53. Br J Cancer (2015) 112(8):1358−66. doi: 10.1038/bjc.2015.20
Bruyere D Monnien F Colpart P Roncarati P Vuitton L Hendrick E et al. Treatment algorithm and prognostic factors for patients with stage I-III carcinoma of the anal canal: a 20-year multicenter study. Mod Pathol (2021) 34(1):116−30. doi: 10.1038/s41379-020-0637-6
Shulzhenko N Lyng H Sanson GF Morgun A. Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman. Trends Microbiol (2014) 22(6):345−53. doi: 10.1016/j.tim.2014.02.009
Jacquin E Baraquin A Ramanah R Carcopino X Morel A Valmary-Degano S et al. Methylation of human papillomavirus type 16 CpG sites at E2-binding site 1 (E2BS1), E2BS2, and the Sp1-binding site in cervical cancer samples as determined by high-resolution melting analysis–PCR. J Clin Microbiol (2013) 51(10):3207−15. doi: 10.1128/JCM.01106-13
Kamal M Lameiras S Deloger M Morel A Vacher S Lecerf C et al. Human papilloma virus (HPV) integration signature in cervical cancer: identification of MACROD2 gene as HPV hot spot integration site. Br J Cancer (2021) 124(4):777−85. doi: 10.1038/s41416-020-01153-4
Holmes A Lameiras S Jeannot E Marie Y Castera L Sastre-Garau X et al. Mechanistic signatures of HPV insertions in cervical carcinomas. NPJ Genom Med 16 mars (2016) 1:16004. doi: 10.1038/npjgenmed.2016.4
Wong KK Chang S Weiler SR Ganesan S Chaudhuri J Zhu C et al. Telomere dysfunction impairs DNA repair and enhances sensitivity to ionizing radiation. Nat Genet (2000) 26(1):85−8. doi: 10.1038/79232
Wang X Li X Xu F Zhang Y Liu H Tao Y. Association of telomerase reverse transcriptase promoter mutations with the prognosis of glioma patients: a meta-analysis. Mol Neurobiol (2016) 53(4):2726−32. doi: 10.1007/s12035-015-9400-2
Huang DS Wang Z He XJ Diplas BH Yang R Killela PJ et al. Recurrent TERT promoter mutations identified in a large-scale study of multiple tumor types are associated with increased TERT expression and telomerase activation. Eur J Cancer (2015) 51(8):969−76. doi: 10.1016/j.ejca.2015.03.010
Killela PJ Reitman ZJ Jiao Y Bettegowda C Agrawal N Diaz LA et al. TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal. Proc Natl Acad Sci U S A (2013) 110(15):6021−6. doi: 10.1073/pnas.1303607110
Heidenreich B Kumar R. TERT promoter mutations in telomere biology. Mutat Res Rev Mutat Res (2017) 771:15−31. doi: 10.1016/j.mrrev.2016.11.002
Cacheux W Dangles-Marie V Rouleau E Lazartigues J Girard E Briaux A et al. Exome sequencing reveals aberrant signalling pathways as hallmark of treatment-naive anal squamous cell carcinoma. Oncotarget (2017) 9(1):464−76. doi: 10.18632/oncotarget.23066
Koncar RF Feldman R Bahassi EM Hashemi Sadraei N. Comparative molecular profiling of HPV-induced squamous cell carcinomas. Cancer Med (2017) 6(7):1673−85. doi: 10.1002/cam4.1108
Mondaca S Chatila WK Bates D Hechtman JF Cercek A Segal NH et al. FOLFCIS treatment and genomic correlates of response in advanced anal squamous cell cancer. Clin Colorectal Cancer (2019) 18(1):e39−52. doi: 10.1016/j.clcc.2018.09.005
Morris V Rao X Pickering C Foo WC Rashid A Eterovic K et al. Comprehensive genomic profiling of metastatic squamous cell carcinoma of the anal canal. Mol Cancer Res (2017) 15(11):1542−50. doi: 10.1158/1541-7786.MCR-17-0060
Mouw KW Cleary JM Reardon B Pike J Braunstein LZ Kim J et al. Genomic evolution after chemoradiotherapy in anal squamous cell carcinoma. Clin Cancer Res (2017) 23(12):3214−22. doi: 10.1158/1078-0432.CCR-16-2017
Smaglo BG Tesfaye A Halfdanarson TR Meyer JE Wang J Gatalica Z et al. Comprehensive multiplatform biomarker analysis of 199 anal squamous cell carcinomas. Oncotarget (2015) 6(41):43594−604. doi: 10.18632/oncotarget.6202
Henderson S Chakravarthy A Su X Boshoff C Fenton TR. APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development. Cell Rep (2014) 7(6):1833−41. doi: 10.1016/j.celrep.2014.05.012
Faden DL Kuhs KAL Lin M Langenbucher A Pinheiro M Yeager M et al. APOBEC mutagenesis is concordant between tumor and viral genomes in HPV-positive head and neck squamous cell carcinoma. Viruses (2021) 13(8):1666. doi: 10.3390/v13081666
Armstrong SA Malley R Wang H Lenz HJ Arguello D El-Deiry WS et al. Molecular characterization of squamous cell carcinoma of the anal canal. J Gastrointest Oncol (2021) 12(5):2423−37. doi: 10.21037/jgo-20-610
Aldersley J Lorenz DR Mouw KW D’Andrea AD Gabuzda D. Genomic landscape of primary and recurrent anal squamous cell carcinomas in relation to HPV integration, copy-number variation, and DNA damage response genes. Mol Cancer Res (2021) 19(8):1308−21. doi: 10.1158/1541-7786.MCR-20-0884
McBride AA Warburton A. The role of integration in oncogenic progression of HPV-associated cancers. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5383336/ (Accessed 23 févr 2021).
Pinatti LM Walline HM Carey TE. Human papillomavirus genome integration and head and neck cancer. J Dent Res (2018) 97(6):691−700. doi: 10.1177/0022034517744213
Akagi K Li J Broutian TR Padilla-Nash H Xiao W Jiang B et al. Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability. Genome Res (2014) 24(2):185−99. doi: 10.1101/gr.164806.113
Spehner L Boustani J Cabel L Doyen J Vienot A Borg C et al. Present and future research on anal squamous cell carcinoma. Cancers (2021) 13(15):3895. doi: 10.3390/cancers13153895
Cohen AC Roane BM Leath CA. Novel therapeutics for recurrent cervical cancer: Moving towards personalized therapy. Drugs (2020) 80(3):217−27. doi: 10.1007/s40265-019-01249-z
Farias JPF Rangel da Silva MHC Jácome AA. Emerging and experimental agents for anal cancer: What is new? J Exp Pharmacol (2021) 13:433−40. doi: 10.2147/JEP.S262342
Rao S Anandappa G Capdevila J Dahan L Evesque L Kim S et al. A phase II study of retifanlimab (INCMGA00012) in patients with squamous carcinoma of the anal canal who have progressed following platinum-based chemotherapy (POD1UM-202)☆. ESMO Open [Internet] 7(4). https://www.esmoopen.com/article/S2059-7029(22)00150-8/fulltext. doi: 10.1016/j.esmoop.2022.100529
Marabelle A Cassier PA Fakih M Kao S Nielsen D Italiano A et al. Pembrolizumab for previously treated advanced anal squamous cell carcinoma: results from the non-randomised, multicohort, multicentre, phase 2 KEYNOTE-158 study. Lancet Gastroenterol Hepatol (2022) 7(5):446−54. doi: 10.1016/S2468-1253(21)00382-4
Morris VK Salem ME Nimeiri H Iqbal S Singh P Ciombor K et al. Nivolumab for previously treated unresectable metastatic anal cancer (NCI9673): a multicentre, single-arm, phase 2 study. Lancet Oncol (2017) 18(4):446−53. doi: 10.1016/S1470-2045(17)30104-3