Article (Scientific journals)
CT Reconstruction Kernels and the Effect of Pre- and Post-Processing on the Reproducibility of Handcrafted Radiomic Features.
Refaee, Turkey; Salahuddin, Zohaib; Widaatalla, Yousif et al.
2022In Journal of Personalized Medicine, 12 (4), p. 553
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Keywords :
ComBat harmonization; image harmonization; radiomics reproducibility; reconstruction kernel; Medicine (miscellaneous)
Abstract :
[en] Handcrafted radiomics features (HRFs) are quantitative features extracted from medical images to decode biological information to improve clinical decision making. Despite the potential of the field, limitations have been identified. The most important identified limitation, currently, is the sensitivity of HRF to variations in image acquisition and reconstruction parameters. In this study, we investigated the use of Reconstruction Kernel Normalization (RKN) and ComBat harmonization to improve the reproducibility of HRFs across scans acquired with different reconstruction kernels. A set of phantom scans (n = 28) acquired on five different scanner models was analyzed. HRFs were extracted from the original scans, and scans were harmonized using the RKN method. ComBat harmonization was applied on both sets of HRFs. The reproducibility of HRFs was assessed using the concordance correlation coefficient. The difference in the number of reproducible HRFs in each scenario was assessed using McNemar's test. The majority of HRFs were found to be sensitive to variations in the reconstruction kernels, and only six HRFs were found to be robust with respect to variations in reconstruction kernels. The use of RKN resulted in a significant increment in the number of reproducible HRFs in 19 out of the 67 investigated scenarios (28.4%), while the ComBat technique resulted in a significant increment in 36 (53.7%) scenarios. The combination of methods resulted in a significant increment in 53 (79.1%) scenarios compared to the HRFs extracted from original images. Since the benefit of applying the harmonization methods depended on the data being harmonized, reproducibility analysis is recommended before performing radiomics analysis. For future radiomics studies incorporating images acquired with similar image acquisition and reconstruction parameters, except for the reconstruction kernels, we recommend the systematic use of the pre- and post-processing approaches (respectively, RKN and ComBat).
Disciplines :
Radiology, nuclear medicine & imaging
Author, co-author :
Refaee, Turkey ;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands ; Department of Diagnostic Radiology, Faculty of Applied Medical Sciences, Jazan University, Jazan 45142, Saudi Arabia
Salahuddin, Zohaib;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands
Widaatalla, Yousif;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands
Primakov, Sergey;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands ; Department of Radiology and Nuclear Medicine, Maastricht University Medical Center, 6200 Maastricht, The Netherlands
Woodruff, Henry C ;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands ; Department of Radiology and Nuclear Medicine, Maastricht University Medical Center, 6200 Maastricht, The Netherlands
Hustinx, Roland  ;  Centre Hospitalier Universitaire de Liège - CHU > > Service médical de médecine nucléaire et imagerie onco
Mottaghy, Felix M;  Department of Radiology and Nuclear Medicine, Maastricht University Medical Center, 6200 Maastricht, The Netherlands ; Department of Nuclear Medicine and Comprehensive Diagnostic Center Aachen (CDCA), University Hospital RWTH Aachen University, 52074 Aachen, Germany
Ibrahim, Abdalla ;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands ; Department of Radiology, Columbia University Irving Medical Center, New York, NY 10032, USA
Lambin, Philippe ;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands ; Department of Radiology and Nuclear Medicine, Maastricht University Medical Center, 6200 Maastricht, The Netherlands
Language :
English
Title :
CT Reconstruction Kernels and the Effect of Pre- and Post-Processing on the Reproducibility of Handcrafted Radiomic Features.
Publication date :
31 March 2022
Journal title :
Journal of Personalized Medicine
eISSN :
2075-4426
Publisher :
MDPI, Switzerland
Volume :
12
Issue :
4
Pages :
553
Peer reviewed :
Peer Reviewed verified by ORBi
Funders :
ERC - European Research Council [BE]
DCS - Dutch Cancer Society [NL]
Funding text :
The authors acknowledge financial support from ERC advanced grant (ERC-ADG-2015 n° 694812—Hypoximmuno), ERC-2020-PoC: 957565-AUTO.DISTINCT. The authors also acknowledge financial support from the European Union’s Horizon 2020 research and innovation program under grant agreement: ImmunoSABR n° 733008, MSCA-ITN-PREDICT n° 766276, CHAIMELE-ON n° 952172, EuCanImage n° 952103, JTI-IMI2-2020-23-two-stage IMI-OPTIMA n° 101034347 and TRANSCAN Joint Transnational Call 2016 (JTC2016 CLEARLY n° UM 2017-8295).Funding: The authors acknowledge financial support from ERC advanced grant (ERC-ADG-2015 n◦ 694812—Hypoximmuno), ERC-2020-PoC: 957565-AUTO.DISTINCT. The authors also acknowledge financial support from the European Union’s Horizon 2020 research and innovation program under grant agreement: ImmunoSABR n◦ 733008, MSCA-ITN-PREDICT n◦ 766276, CHAIMELE-ON n◦ 952172, EuCanImage n◦ 952103, JTI-IMI2-2020-23-two-stage IMI-OPTIMA n◦ 101034347 and TRANSCAN Joint Transnational Call 2016 (JTC2016 CLEARLY n◦ UM 2017-8295).
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