Adeyeye, S. A. O., Oyewole, O. B., Obadina, A. O., & Omemu, A. M. (2015). Microbiological assessment of smoked silver catfish (Chrysichthys nigrodigitatus). African Journal of Microbiology Research, 5, 1–9.
Anihouvi, D. G., Kpoclou, E. Y., Abdel Massih, M., Iko Afé, O. H., Assogba, M. F., Covo, M., Scippo, M.-L., Hounhouigan, D. J., Anihouvi, V. B., & Mahillon, J. (2019). Microbiological characteristics of smoked and smoked-dried fish processed in Benin. Food Sciences & Nutrition, 7, 1821–1827.
Anihouvi, D. G. H., Kpoclou, Y. E., Assogba, M. F., Iko Afé, O. H., Lègba, G., Scippo, M.-L., Hounhouigan, D. J., Anihouvi, V. B., & Mahillon, J. (2020). Microbial contamination associated with the processing of grilled pork, a ready- to-eat street food in Benin. Journal of Food Safety, 40, e12731. https://doi.org/10.1111/jfs.12731
Arias, C. R., Koenders, K., & Larsen, A. M. (2013). Predominant bacteria associated with red snapper from the Northern Gulf of Mexico. Journal of Aquatic Animal Health, 25, 281–289. https://doi.org/10.1080/08997659.2013.847872
Arias, C. R., Willmon, E., Cai, W., & Ray, C. L. (2019). Fish are not alone: Characterization of the gut and skin microbiomes of Largemouth Bass (Micropterus salmoides), Bluegill (Lepomis macrochirus), and Spotted Gar (Lepisosteus oculatus). SDRP Journal of Aquaculture, Fisheries & Fish Sciences, 2, 136–154. https://doi.org/10.25177/JAFFS.2.2.RA.459
Assogba, M. F., Anihouvi, D. G. H., Iko Afé, O. H., Kpoclou, Y. E., Mahillon, J., Scippo, M.-L., Hounhouigan, D. J., & Anihouvi, V. B. (2019). Processing methods, preservation practices and quality attributes of smoked and smoked-dried fishes consumed in Benin. Cogent Food & Agriculture, 5, 1641255. https://doi.org/10.1080/23311932.2019.1641255
Ayeloja, A. A., George, F. O. A., Jimoh, W. A., Shittu, M. O., & Abdulsalami, S. A. (2018). Microbial load on smoked fish commonly traded in Ibadan, Oyo State, Nigeria. Journal of Applied Sciences and Environmental Management, 22, 493–497. https://doi.org/10.4314/jasem.v22i4.9
Aygül, K., Ali, E. K., & Mehmet, C. (2010). Fatty acid composition and sensory properties of Wels catfish (Silurus glanis) hot smoked with different sawdust materials. International Journal of Food Science & Technology, 45, 2645–2649.
Azi, F., Tu, C., Rasheed, H. A., & Dong, M. (2019). Comparative study of the phenolics, antioxidant and metagenomic composition of novel soy whey-based beverages produced using three different water kefir microbiota. International Journal of Food Science & Technology, 55, 1689–1697.
Barcik, W., Wawrzyniak, M., Akdis, C. A., & O’Mahony, L. (2017). Immune regulation by histamine and histamine-secreting bacteria. Current Opinion Immunology, 48, 108–113. https://doi.org/10.1016/j.coi.2017.08.011
Boutin, S., Sauvage, C., Bernatchez, L., Audet, C., & Derome, N. (2014). Inter-individual variations of the fish skin microbiota: Host genetics basis of mutualism? PLoS One, 9(7), e102649. https://doi.org/10.1371/journal.pone.0102649
Chen, Y.-G., Cui, X.-L., Pukall, R., Li, H.-M., Yang, Y.-L., Xu, L.-H., Wen, M.-L., Peng, Q., & Jiang, C.-L. (2007). Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China. International Journal of Systematic and Evolutionary Microbiology, 57, 2327–2332.
Chiarello, M., Villéger, S., Bouvier, C., Bettarel, Y., & Bouvier, T. (2015). High diversity of skin-associated bacterial communities of marine fishes is promoted by their high variability among body parts, individuals and species. FEMS Microbiology Ecology, 91(7), 1–12. https://doi.org/10.1093/femsec/fiv061
Chourashi, R., Mondal, M., Sinha, R., Debnath, A., Das, S., Koley, H., & Chatterjee, N. S. (2016). Role of a sensor histidine kinase ChiS of Vibrio cholerae in pathogenesis. International Journal of Medical Microbiology, 306, 657–665. https://doi.org/10.1016/j.ijmm.2016.09.003
Ciupescu, L.-M., Auvray, F., Nicorescu, M. I., Meheut, T., Ciupescu, V., Lardeux, A.-L., Tanasuica, R., & Hennekinne, J.-A. (2018). Characterization of Staphylococcus aureus strains and evidence for the involvement of non-classical enterotoxin genes in food poisoning outbreaks. FEMS Microbiology Letters, 365, 1–7. https://doi.org/10.1093/femsle/fny139
Daramola, J. A., Alao, F. O., Osofero, S. A., & Wemimo, O. O. (2014). Assessment of the microbial and sensory qualities of smoked African Catfish (Clarias gariepinus). Journal of Asian Earth Sciences, 3, 11–22.
De Filippis, F., Parente, E., & Ercolini, D. (2018). Recent past, present, and future of the food microbiome. Annual Review of Food Science and Technology, 9, 589–608. https://doi.org/10.1146/annurev-food-030117-012312
Dehghani, S., Hosseini, S. V., & Regenstein, J. L. (2018). Edible films and coatings in seafood preservation: A review. Food Chemistry, 240, 505–513. https://doi.org/10.1016/j.foodchem.2017.07.034
Durán-Viseras, A., Castro, D. J., Reina, J. C., Béjar, V., & Martínez-Checa, F. (2021). Taxogenomic and metabolic insights into Marinobacterium ramblicola sp. nov., a new slightly halophilic bacterium isolated from Rambla Salada, Murcia. Microorganisms, 9, 1654.
Edgar, R. C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460–2461. https://doi.org/10.1093/bioinformatics/btq461
Edgar, R. C. (2013). UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996–998. https://doi.org/10.1038/nmeth.2604
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011). UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, 27, 2194–2200. https://doi.org/10.1093/bioinformatics/btr381
Fall, M., Diop, M. B., Montet, D., Maiga, A. S., & Guiro, A. T. (2019). Fermentation du poisson en Afrique de l’Ouest et défis sociétaux pour une amélioration qualitative des produits (adjuevan, guedj et lanhouin): Revue de la littérature. Cahiers Agriculture, 28, 1–12.
Feng, C., Teuber, S., & Gershwin, M. E. (2016). Histamine (Scombroid) fish poisoning a comprehensive review. Clinical Reviews in Allergy and Immunology, 50, 64–69. https://doi.org/10.1007/s12016-015-8467-x
Fiore, N. A., Dunigan, D. D., Shaffer, J. J., Roberts, R., Antony-Babu, S., Plantz, B. A., Nickerson, K. W., Benson, A. K., & Weber, K. A. (2019). Microbial community of saline, alkaline lakes in the Nebraska Sandhills based on 16S rRNA gene amplicon sequence data. Microbiology Resource Announcements, 8, e00063–e119. https://doi.org/10.1128/MRA.00063-19
Ghaly, A. E., Dave, D., Budge, S., & Brooks, M. S. (2010). Fish spoilage mechanisms and preservation techniques: Review. American Journal of Applied Science, 7, 846–864. https://doi.org/10.3844/ajassp.2010.859.877
Green, T. J., Smullen, R., & Barnes, A. C. (2013). Dietary soybean protein concentrate-induced intestinal disorder in marine farmed Atlantic salmon, Salmo salar is associated with alterations in gut microbiota. Veterinary Microbiology, 166, 286–292. https://doi.org/10.1016/j.vetmic.2013.05.009
Grice, E. A., & Segre, J. A. (2011). The skin microbiome. Nature Reviews Microbiology, 9, 244–253. https://doi.org/10.1038/nrmicro2537
Griffiths, M. W., & Schraft, H. (2017). Bacillus cereus food poisoning. In C. Dodd, T. Aldsworth, & R. Stein (Eds.), Foodborne Diseases (pp. 395–405). Elsevier.
Grimaud, R. (2010). Marinobacter. In K. N. Timmis (Ed.), Handbook of hydrocarbon and lipid microbiology. (pp. 1290–1296). Springer-Verlag.
Guergué-Díaz de Cerio, O., Barrutia-Borque, A., & Gardeazabal-García, J. (2016). Scombroid poisoning: A practical approach. Actas Dermo-Sifiliográficas (English Edition), 107, 567–571. https://doi.org/10.1016/j.adengl.2016.06.003
Hennekinne, J.-A., Herbin, S., Firmesse, O., & Auvray, F. (2015). European food poisoning outbreaks involving meat and meat-based products. Procedia Food Science, 5, 93–96. https://doi.org/10.1016/j.profoo.2015.09.024
Hu, N., Lei, M., Zhao, X., Wang, Y., Zhang, Y., & Wang, S. (2020). Analysis of microbiota in Hainan Yucha during fermentation by 16S rRNA gene high-throughput sequencing. Journal of Food Processing & Preservation, 44(7), e14523. https://doi.org/10.1111/jfpp.14523
Iko Afé, O. H., Assogba, M. F., Anihouvi, D. G. H., Boukary, B.-S., Douny, C., Kpoclou, Y. E., Amoussou Fagla, B., Igout, A., Mahillon, J., Anihouvi, V. B., Hounhouigan, D. J., & Scippo, M.-L. (2020). Consumption and physico-chemical characteristics of smoked and smoked-dried fish commonly produced in South Benin and contribution to recommended nutrient intakes. Food Science & Nutrition, 8, 4822–4830. https://doi.org/10.1002/fsn3.1763
Iko Afé, O. H., Saegerman, C., Kpoclou, Y. E., Douny, C., Igout, A., Mahillon, J., Anihouvi, V. B., Hounhouigan, D. J., & Scippo, M.-L. (2021). Contamination of smoked fish and smoked-dried fish with polycyclic aromatic hydrocarbons and biogenic amines and risk assessment for the Beninese consumers. Food Control, 126, 108089.
Ikutegbe, V., & Sikoki, F. (2014). Microbiological and biochemical spoilage of smoke-dried fishes sold in West African open markets. Food Chemistry, 161, 332–336. https://doi.org/10.1016/j.foodchem.2014.04.032
Ineyougha, E. R., Orutugu, L. A., & Izah, S. C. (2015). Assessment of microbial quality of smoked Trachurus trachurus sold in some markets of three South-south States, Nigeria. International Journal of Food Research, 2, 16–23.
Izuchukwu, N. (2017). Bacterial isolates from seafood in Scotland. IOSR-Journal of Pharmacy and Biological Sciences, 12, 28–35.
Jang, G. I., Kim, G. H., Hwang, C. Y., & Cho, B. C. (2017). Prokaryotic community composition in alkaline-fermented skate (Raja pulchra). Food Microbiology, 61, 72–82.
Jia, S., Huang, Z., Lei, Y., Zhang, L., Li, Y., & Luo, Y. (2018). Application of Illumina-MiSeq high throughput sequencing and culture-dependent techniques for the identification of microbiota of silver carp (Hypophthalmichthys molitrix) treated by tea polyphenols. Food Microbiology, 76, 52–61. https://doi.org/10.1016/j.fm.2018.04.010
Jiyipong, T., Morand, S., Jittapalapong, S., & Rolain, J.-M. (2015). Bartonella spp. infections in Rodents of Bambodia, Lao PRD, and Thailand: Identifying risky habitats. Vector-Borne and Zoonotic Diseases, 15, 48–55.
Kergourlay, G., Taminiau, B., Daube, G., & Champomier Vergès, M.-C. (2015). Metagenomic insights into the dynamics of microbial communities in food. International Journal of Food Microbiology, 213, 31–39. https://doi.org/10.1016/j.ijfoodmicro.2015.09.010
Kuuliala, L., Al Hage, Y., Ioannidis, A.-G., Sader, M., Kerckhof, F.-M., Vanderroost, M., Boon, N., De Baets, B., De Meulenaer, B., Ragaert, P., & Devlieghere, F. (2018). Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (Gadus morhua) stored under modified atmospheres. Food Microbiology, 70, 232–244. https://doi.org/10.1016/j.fm.2017.10.011
Llewellyn, M. S., Boutin, S., Hoseinifar, S. H., & Derome, N. (2014). Teleost microbiomes: The state of the art in their characterization, manipulation and importance in aquaculture and fisheries. Frontier in Microbiology, 5, 1–18. https://doi.org/10.3389/fmicb.2014.00207
Lowrey, L., Woodhams, D. C., Tacchi, L., & Salinas, I. (2015). Topographical mapping of the rainbow trout (Oncorhynchus mykiss) microbiome reveals a diverse bacterial community with antifungal properties in the skin. Applied and Environmental Microbiology, 81, 6915–6925. https://doi.org/10.1128/AEM.01826-15
Navarrete, P., Espejo, R. T., & Romero, J. (2009). Molecular analysis of microbiota along the digestive tract of juvenile Atlantic salmon (Salmo salar L.). Microbial Ecology, 57, 550–561. https://doi.org/10.1007/s00248-008-9448-x
Nychas, G. J. E., Skandamis, P. N., Tassou, C. C., & Koutsoumanis, K. P. (2008). Meat spoilage during distribution. Meat Science, 78, 77–89. https://doi.org/10.1016/j.meatsci.2007.06.020
Parlapani, F. F. (2021). Microbial diversity of seafood. Current Opinion in Food Science, 37, 45–51. https://doi.org/10.1016/j.cofs.2020.09.005
Parlapani, F. F., Ferrocino, I., Michailidou, S., Argiriou, A., Haroutounian, S. A., Kokokiris, L., Rantsiou, K., & Boziaris, I. S. (2020). Microbiota and volatilome profile of fresh and chill-stored deep-water rose shrimp (Parapenaeus longirostris). Food Research International, 132, 109057. https://doi.org/10.1016/j.foodres.2020.109057
Parlapani, F. F., Michailidou, S., Pasentsis, K., Argiriou, A., Krey, G., & Boziaris, I. S. (2018). A meta-barcoding approach to assess and compare the storage temperature dependent bacterial diversity of gilt-head sea bream (Sparus aurata) originating from fish farms from two geographically distinct areas of Greece. International Journal of Food Microbiology, 278, 36–43. https://doi.org/10.1016/j.ijfoodmicro.2018.04.027
Pimentel, T., Marcelino, J., Ricardo, F., Soares, A. M. V. M., & Calado, R. (2017). Bacterial communities 16S rDNA fingerprinting as a potential tracing tool for cultured seabass Dicentrarchus labrax. Scientific Report, 7, 11862. https://doi.org/10.1038/s41598-017-11552-y
Regulation, C. (2005). No 2073/2005 of 15 November 2005 on microbiological criteria for foodstuffs. Official Journal of the European Union, L338, p1.
Rosado, D., Pérez-Losada, M., Severino, R., Cable, J., & Xavier, R. (2018). Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata). Aquaculture, 500, 57–64. https://doi.org/10.1016/j.aquaculture.2018.09.063
Smriga, S., Sandin, S. A., & Azam, F. (2010). Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and faeces. FEMS Microbiology Ecology, 73, 31–42.
Tapia-Paniaga, T. S., Ceballos-Francisco, D., Balebona, C. M., Esteban, A. M., & Morinigo, A. M. (2018). Mucus glycosylation, immunity and bacterial microbiota associated to the skin of experimentally ulcered gilthead seabream (Sparus aurata). Fish and Shellfish Immunology, 75, 381–390. https://doi.org/10.1016/j.fsi.2018.02.006
Urbanczyk, H., Ast, J. C., & Dunlap, P. V. (2011). Phylogeny, genomics, and symbiosis of Photobacterium. FEMS Microbiology Reviews, 35, 324–342.
Wang, Y., Guo, J., & Huang, A. (2017). Study on bacterial diversity in traditional sour whey of Yunnan province. Journal of Food Processing & Preservation, 42, e13553.
Zhang, J., Kobert, K., Flouri, T., & Stamatakis, A. (2014). PEAR: A fast and accurate Illumina Paired-End reAd mergeR. Bioinformatics, 30, 614–620. https://doi.org/10.1093/bioinformatics/btt593
Zhao, C. C., & Eun, J. B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Research International, 131, 109030. https://doi.org/10.1016/j.foodres.2020.109030
Zotta, T., Parente, E., Ianniello, R. G., De Filippis, F., & Ricciardi, A. (2019). Dynamics of bacterial communities and interaction networks in thawed fish fillets during chilled storage in air. International Journal of Food Microbiology, 293, 102–113. https://doi.org/10.1016/j.ijfoodmicro.2019.01.008
