Niang, P. M.; Microbial Processes and Interactions, TERRA Teaching and Research Center, University of Liège - Gembloux Agro-Bio Tech, Gembloux, 5030, Belgium
Arguelles Arias, Anthony ; Microbial Processes and Interactions, TERRA Teaching and Research Center, University of Liège - Gembloux Agro-Bio Tech, Gembloux, 5030, Belgium
Steels, Sébastien ; Université de Liège - ULiège > Département GxABT > Microbial, food and biobased technologies
Denies, Olivia ; Université de Liège - ULiège > Département GxABT > Microbial, food and biobased technologies
Nicaud, J.-M.; Micalis Institute, UMR1319, Team BIMLip: Integrative Metabolism of Microbial Lipids, INRA - AgroParisTech, Domaine de Vilvert, Jouy-en Josas, 78352, France
Fickers, Patrick ; Université de Liège - ULiège > Département GxABT > Microbial, food and biobased technologies
Language :
English
Title :
In Yarrowia lipolytica erythritol catabolism ends with erythrose phosphate
Barbier T, Collard F, Zúñiga-Ripa A, Moriyón I, Godard T, Becker J, Letesson J-J (2014) Erythritol feeds the pentose phosphate pathway via three new isomerases leading to D-erythrose-4-phosphate in Brucella. Proc Natl Acad Sci 111(50): 17815–20, https://doi.org/10.1073/pnas.1414622111
Barth G, Gaillardin C (1996) Yarrowia lipolytica. In: Wolf K, ed. Nonconventional yeasts in biotechnology: a handbook, Berlin, Heidelberg: Springer, pp. 313–88.
Barth G, Gaillardin C (1997) Physiology and genetics of the dimorphic fungus Yarrowia lipolytica. FEMS Microbiol Rev 19: 219–37.
Bernt WO, Borzelleca JF, Flamm G, Munro IC (1996) Erythritol: a review of biological and toxicological studies. RTP 24(2): S191–97, https://doi.org/10.1006/rtph.1996.0098
Carly F, Fickers P (2018) Erythritol production by yeasts: a snapshot of current knowledge. Yeast 35(7): 455–63, https://doi.org/10.1002/yea.3306
Carly F, Gamboa-Melendez H, Vandermies M, Damblon C, Nicaud JM, Fickers P (2017a) Identification and characterization of EYK1, a key gene for erythritol catabolism in Yarrowia lipolytica. Appl Microbiol Biotechnol 101(17): 6587–96, https://doi.org/10.1007/s00253-017-8361-y
Carly F, Steels S, Telek S, Vandermies M, Nicaud JM, Fickers P (2018) Identification and characterization of EYD1, encoding an erythritol dehydrogenase in Yarrowia lipolytica and its application to bioconvert erythritol into erythrulose. Bioresour Technol 247: 963–9, https://doi.org/10.1016/j.biortech.2017.09.168
Carly F, Vandermies M, Telek S, Steels S, Thomas S, Nicaud J-M, Fickers P (2017b) Enhancing erythritol productivity in Yarrowia lipolytica using metabolic engineering. Metab Eng 42: 19–24, https://doi.org/10.1016/j.ymben.2017.05.002
Cheng H, Wang S, Bilal M, Ge X, Zhang C, Fickers P, Cheng H (2018) Identification, characterization of two NADPH-dependent erythrose reductases in the yeast Yarrowia lipolytica and improvement of erythritol productivity using metabolic engineering. Microb Cell Fact 17(1): 133, https://doi.org/10.1186/s12934-018-0982-z
Djoumbou-Feunang Y, Pon A, Karu N, Zheng J, Li C, Arndt D, Wishart SD (2019) CFM-ID 3.0: significantly improved ESI-MS/MS prediction and compound identification. Metabolites 9(4): 72, https://doi.org/10.3390/metabo9040072
Fickers P, Le Dall MT, Gaillardin C, Thonart P, Nicaud JM (2003) New disruption cassettes for rapid gene disruption and marker rescue in the yeast Yarrowia lipolytica. J Microbiol Meth 55(3): 727–37, https://doi.org/10.1016/j.mimet.2003.07.003
Higgins DG, Sharp PM (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73(1): 237–44, https://doi.org/10.1016/0378-1119(88)90330-7
Huang Z, Luo Q, Guo Y, Chen J, Xiong G, Peng Y, Li J (2015) Mycobacterium tuberculosis-induced polarization of human macrophage orchestrates the formation and development of tuberculous granulomas in vitro. PLoS One 10(6): e0129744, https://doi.org/10.1371/journal.pone.0129744
Janek T, Dobrowolski A, Biegalska A, Mirończuk AM (2017) Characterization of erythrose reductase from Yarrowia lipolytica and its influence on erythritol synthesis. Microb Cell Fact 16(1): 118, https://doi.org/10.1186/s12934-017-0733-6
Lazar Z, Rossignol T, Verbeke J, Crutz-Le Coq AM, Nicaud JM, Robak M (2013) Optimized Invertase Expression and Secretion Cassette for Improving Yarrowia Lipolytica Growth on Sucrose for Industrial Applications. J Ind Microbiol Biotechnol 40(11): 1273–1283.
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25(4): 402–408, https://doi.org/10.1006/meth.2001.1262
Mirończuk AM, Biegalska A, Zugaj K, Rzechonek DA, Dobrowolski A (2018) A role of a newly identified isomerase from Yarrowia lipolytica in erythritol catabolism. Front Microbiol 9(1122, https://doi.org/10.3389/fmicb.2018.01122
Moon H-J, Jeya M, Kim I-W, Lee J-K (2010) Biotechnological production of erythritol and its applications. Appl Microbiol Biotechnol 86(4): 1017–25, https://doi.org/10.1007/s00253-010-2496-4
Nishimura K, Harada T, Arita Y, Watanabe H, Iwabuki H, Terada A, Uzuka Y (2006) Identification of enzyme responsible for erythritol utilization and reaction product in yeast Lipomyces starkeyi. J Biosci Bioeng 101(4): 303–308, https://doi.org/10.1263/jbb.101.303
Querol A, Barrio E, Huerta T, Ramón D (1992) Molecular monitoring of wine fermentations conducted by active dry yeast strains. Appl Environ Microbiol 58(9): 2948–53.
Regnat K, Mach RL, Mach-Aigner AR (2018) Erythritol as sweetener-wherefrom and whereto? Appl Microbiol Biotechnol 102(2): 587–95, https://doi.org/10.1007/s00253-017-8654-1
Rymowicz W, Rywińska A, Gładkowski W (2008) Simultaneous production of citric acid and erythritol from crude glycerol by Yarrowia lipolytica Wratislavia K1. Chem Pap 62(3): 239, https://doi.org/10.2478/s11696-008-0018-y
Rzechonek DA, Dobrowolski A, Rymowicz W, Mirończuk AM (2018) Recent advances in biological production of erythritol. Crit Rev Biotechnol 38(4): 620–33, https://doi.org/10.1080/07388551.2017.1380598
Sambrook J, Fritsch E, Maniatis T (1989) Molecular cloning: a laboratory manual. 2nd ed. Plainview, NY: Cold Spring Harbor Laboratory Press.
Sangari FJ, Agüero J, Garcı́a-Lobo JM (2000) The genes for erythritol catabolism are organized as an inducible operon in Brucella abortus. Microbiology 146(2): 487–95, https://doi.org/10.1099/00221287-146-2-487
Sassi H, Delvigne F, Kar T, Nicaud J-M, Coq A-MC-L, Steels S, Fickers P (2016) Deciphering how LIP2 and POX2 promoters can optimally regulate recombinant protein production in the yeast Yarrowia lipolytica. Microb Cell Fact 15(1): 159, https://doi.org/10.1186/s12934-016-0558-8
Vandermies M, Denies O, Nicaud J-M, Fickers P (2017) EYK1 encoding erythrulose kinase as a catabolic selectable marker for genome editing in the non-conventional yeast Yarrowia lipolytica. J Microbiol Meth 139: 161–164, https://doi.org/10.1016/j.mimet.2017.05.012