Abou Kubaa R., Digiaro M., Bottalico G., Elbeaino T., (2014). Plum hosts apricot vein clearing associated virus. J. Plant Pathol. 96 603–611.
Al Rwahnih M., Alabi O. J., Westrick N. M., Golino D., (2018). Prunus geminivirus A: a novel grablovirus infecting prunus spp. Plant Dis. 102 1246–1253. 10.1094/PDIS-09-17-1486-RE 30673580
Alishiri A., Rakhshandehroo F., Shams-Bakhsh M., Salehi Jouzani G. R., (2016). Incidence and distribution of fig badnavirus 1 and mulberry badnavirus 1 on mulberry trees in Iran. J. Plant Pathol. 98 341–345. 10.4454/JPP.V98I2.007 32896216
Basso M. F., da Silva J. C. F., Fajardo T. V. M., Fontes E. P. B., Zerbini F. M., (2015). A novel, highly divergent ssDNA virus identified in Brazil infecting apple, pear and grapevine. Virus Res. 210 27–33. 10.1016/j.virusres.2015.07.005 26186890
Beaver-Kanuya E., Szostek S. A., Harper S. J., (2019). Development of real-time RT-PCR assays for two viruses infecting pome fruit. J. Virol. Methods 266 25–29. 10.1016/j.jviromet.2018.12.008 30650343
Bin Y., Li Z., Wu J., Wang X., Zhou Y., Li T., et al. (2018). Development of an immunochromatographic strip test for rapid detection of citrus yellow vein clearing virus. Arch. Virol. 163 349–357. 10.1007/s00705-017-3558-z 29075887
Blouin A. G., Biccheri R., Khalifa M. E., Pearson M. N., Poggi Pollini C., Hamiaux C., et al. (2018). Characterization of Actinidia virus 1, a new member of the family Closteroviridae encoding a thaumatin-like protein. Arch. Virol. 163 229–234. 10.1007/s00705-017-3610-z 29043497
Bragard C., Dehnen-Schmutz K., Gonthier P., Jacques M.-A., Jaques Miret J. A., Justesen A. F., et al. (2019a). List of non-EU viruses and viroids of Cydonia Mill., Fragaria L., Malus Mill., Prunus L., Pyrus L., Ribes L., Rubus L. and Vitis L. EFSA J. 17:e05501. 10.2903/j.efsa.2019.5501 32626418
Bragard C., Dehnen-Schmutz K., Gonthier P., Jacques M.-A., Jaques Miret J. A., Justesen A. F., et al. (2019b). Pest categorisation of non-EU viruses and viroids of Cydonia Mill., Malus Mill. and Pyrus L. EFSA J. 17:e05590. 10.2903/j.efsa.2019.5590 32626419
Bragard C., Dehnen-Schmutz K., Gonthier P., Jacques M.-A., Jaques Miret J. A., Justesen A. F., et al. (2019c). Pest categorisation of non-EU viruses and viroids of Prunus L. EFSA J. 17:e05735. 10.2903/j.efsa.2019.5735 32626421
Bragard C., Dehnen-Schmutz K., Gonthier P., Jacques M. A., Jaques Miret J. A., Justesen A. F., et al. (2019d). Pest categorisation of non-EU viruses of Ribes L. EFSA J. 17:e05859. 10.2903/j.efsa.2019.5859 32626160
Bragard C., Dehnen-Schmutz K., Gonthier P., Jacques M. A., Jaques Miret J. A., Justesen A. F., et al. (2020). Pest categorisation of non-EU viruses of Rubus L. EFSA J. 18 1–69. 10.2903/j.efsa.2020.5928 32626483
Candresse T., Faure C., Theil S., Marais A., (2017). First report of nectarine stem pitting-associated virus infecting Prunus mume in Japan. Plant Dis. 101:393. 10.1094/PDIS-09-16-1323-PDN
Cao M. J., Wu Q., Atta S., Su H. N., Yu Y. Q., Chen H. M., et al. (2016). First molecular evidence of Citrus yellow vein clearing virus from Citrus in Punjab, Pakistan. Plant Dis. 100:540. 10.1094/PDIS-05-15-0609-PDN
Chabi-Jesus C., Ramos-González P. L., Tassi A. D., Guerra-Peraza O., Kitajima E. W., Harakava R., et al. (2018). Identification and characterization of citrus chlorotic spot virus, a new dichorhavirus associated with citrus leprosis-like symptoms. Plant Dis. 102 1588–1598. 10.1094/PDIS-09-17-1425-RE 30673423
Chabi-Jesus C., Ramos-González P. L., Tassi1 A. D., Barguil B. M., Beserra Junior J. E. A., Harakava R., et al. (2019). First report of citrus chlorotic spot virus infecting the succulent plant agave desmettiana. Plant Dis. 103:1438. 10.1094/PDIS-09-18-1617-PDN
Chen H., Ma D., Jin X., Li T., Deng Y., Liu C., et al. (2017). The stability and quantity of coat protein gene of Citrus yellow vein clearing virus in different Citrus cultivars. Acta Hortic. Sin. 44 106–112. 10.16420/j.issn.0513-353x.2016-0484
Chen H. M., Li Z. A., Wang X. F., Zhou Y., Tang K. Z., Zhou C. Y., et al. (2014). First report of Citrus yellow vein clearing virus on Lemon in Yunnan, China. Plant Dis. 98:1747. 10.1094/PDIS-04-14-0343-PDN 30703922
Chen H.-M., Zhou Y., Wang X.-F., Zhou C.-Y., Yang X.-Y., Li Z.-A., (2016). Detection of Citrus yellow vein clearing virus based on a real-time RT-PCR approach. Acta Hortic. Sin. 43 168–174. 10.16420/j.issn.0513-353x.2015-0774
Chiumenti M., Morelli M., De Stradis A., Elbeaino T., Stavolone L., Minafra A., (2016). Unusual genomic features of a badnavirus infecting mulberry. J. Gen. Virol. 97 3073–3087. 10.1099/jgv.0.000600 27604547
Chiumenti M., Navarro B., Venerito P., Civita F., Minafra A., Di Serio F., (2019). Molecular variability of apple hammerhead viroid from Italian apple varieties supports the relevance in vivo of its branched conformation stabilized by a kissing loop interaction. Virus Res. 270:197644. 10.1016/j.virusres.2019.197644 31255643
Cho I.-S., Igori D., Lim S., Choi G.-S., Hammond J., Lim H.-S., et al. (2016). Deep sequencing analysis of apple infecting viruses in Korea. Plant Pathol. J. 32 441–451. 10.5423/PPJ.OA.04.2016.0104 27721694
Cho I. S., Kwon S. J., Yoon J. Y., Chung B. N., Hammond J., Lim H. S., (2017). First report of apple necrotic mosaic virus infecting apple trees in Korea. J. Plant Pathol. 99:815. 10.4454/jpp.v99i3.3980 32896216
Choudhary N., Roy A., Govindarajulu A., Nakhla M. K., Levy L., Brlansky R. H., (2014). Production of monoclonal antibodies for detection of Citrus leprosis virus C in enzyme-linked immuno-assays and immunocapture reverse transcription-polymerase chain reaction. J. Virol. Methods 206 144–149. 10.1016/j.jviromet.2014.06.010 24956418
Choudhary N., Roy A., Guillermo L. M., Picton D. D., Wei G., Nakhla M. K., et al. (2013). Immunodiagnosis of Citrus leprosis virus C using a polyclonal antibody to an expressed putative coat protein. J. Virol. Methods 193 548–553. 10.1016/j.jviromet.2013.07.035 23911294
Choudhary N., Roy A., Leon M. G., Wei G., Nakhla M. K., Levy L., et al. (2017). Production of mono- and polyclonal antibodies to Citrus leprosis virus C2 and their application in triple antibody sandwich ELISA and immunocapture RT-PCR diagnostic assays. J. Virol. Methods 243 177–181. 10.1016/j.jviromet.2017.02.012 28237659
Choudhary N., Wei G., Govindarajulu A., Roy A., Li W., Picton D. D., et al. (2015). Detection of Citrus leprosis virus C using specific primers and TaqMan probe in one-step real-time reverse-transcription polymerase chain reaction assays. J. Virol. Methods 224 105–109. 10.1016/j.jviromet.2015.08.022 26341059
Czotter N., Molnár J., Pesti R., Demián E., Baráth D., Varga T., et al. (2018). Use of siRNAs for diagnosis of viruses associated to woody plants in nurseries and stock collections. Methods Mol. Biol. 1746 115–130. 10.1007/978-1-4939-7683-6_9
Dong L., Lemmetty A., Latvala S., Samuilova O., Valkonen J. P. T., (2016). Occurrence and genetic diversity of Raspberry leaf blotch virus (RLBV) infecting cultivated and wild Rubus species in Finland. Ann. Appl. Biol. 168 122–132. 10.1111/aab.12247
Elbeaino T., Giampetruzzi A., De Stradis A., Digiaro M., (2014). Deep-sequencing analysis of an apricot tree with vein clearing symptoms reveals the presence of a novel betaflexivirus. Virus Res. 181 1–5. 10.1016/j.virusres.2013.12.030 24389094
Fox A., (2020). Reconsidering causal association in plant virology. Plant Pathol. 69 956–961. 10.1111/ppa.13199
García J. A., Glasa M., Cambra M., Candresse T., (2014). Plum pox virus and sharka: a model potyvirus and a major disease. Mol. Plant Pathol. 15 226–241. 10.1111/mpp.12083 24102673
Gazel M., Roumi V., Ördek K., Maclot F., Massart S., Çaðlayan K., (2020). Identification and molecular characterization of a novel foveavirus from Rubus spp. in Turkey. Virus Res. 286:198078. 10.1016/j.virusres.2020.198078 32603671
Guo J., Lai X. P., Li J. X., Yue J. Q., Zhang S. Y., Li Y. Y., et al. (2015). First report on citrus chlorotic dwarf associated virus on lemon in dehong prefecture, Yunnan, China. Plant Dis. 99:1287. 10.1094/PDIS-01-15-0011-PDN
Hassan M., Di Bello P. L., Keller K. E., Martin R. R., Sabanadzovic S., Tzanetakis I. E., (2017). A new, widespread emaravirus discovered in blackberry. Virus Res. 235 1–5. 10.1016/j.virusres.2017.04.006 28396285
He Y., Cai L., Zhou L., Yang Z., Hong N., Wang G., et al. (2017). Deep sequencing reveals the first fabavirus infecting peach. Sci. Rep. 7:11329. 10.1038/s41598-017-11743-7 28900201
Hu G. J., Dong Y. F., Zhang Z. P., Fan X. D., Ren F., (2019). Molecular characterization of Apple necrotic mosaic virus identified in crabapple (Malus spp.) tree of China. J. Integr. Agric. 18 698–701. 10.1016/S2095-3119(18)62116-1
Huang A. J., Song Z., Cao M. J., Chen H. M., Li Z. A., Zhou C. Y., (2015). The complete genome sequence of Citrus vein enation virus from China. J. Integr. Agric. 14 598–601. 10.1016/S2095-3119(14)60903-5
Igori D., Baek D., Kim S. Y., Seo E., Lee S. H., Jeong R. D., et al. (2017a). Complete genome sequence of nectarine stem pitting-associated virus, isolated from Prunus persica in Cheongdo County, South Korea. Annouc. Genome 5 17–18.
Igori D., Lim S., Baek D., Cho I. S., Moon J. S., (2017b). Complete nucleotide sequence of a highly divergent cherry-associated luteovirus (ChALV) isolate from peach in South Korea. Arch. Virol. 162 2893–2896. 10.1007/s00705-017-3418-x 28547383
Isogai M., Matsuhashi Y., Suzuki K., Yashima S., Watanabe M., Yoshikawa N., (2016). Occurrence of blueberry mosaic associated virus in highbush blueberry trees with blueberry mosaic disease in Japan. J. Gen. Plant Pathol. 82 177–179. 10.1007/s10327-016-0653-z
Isogai M., Muramatu S., Watanabe M., Yoshikawa N., (2013). Complete nucleotide sequence and latency of a novel blueberry-infecting closterovirus. J. Gen. Plant Pathol. 79 123–127. 10.1007/s10327-013-0431-0
Isogai M., Tatuto N., Ujiie C., Watanabe M., Yoshikawa N., (2012). Identification and characterization of blueberry latent spherical virus, a new member of subgroup C in the genus Nepovirus. Arch. Virol. 157 297–303. 10.1007/s00705-011-1177-7 22109710
Ito T., Suzaki K., Nakano M., (2013). Genetic characterization of novel putative rhabdovirus and dsRNA virus from Japanese persimmon. J. Gen. Virol. 94 1917–1921. 10.1099/vir.0.054445-0 23704275
James D., Phelan J., (2017). Complete genome sequence and analysis of blackcurrant leaf chlorosis associated virus, a new member of the genus Idaeovirus. Arch. Virol. 162 1705–1709. 10.1007/s00705-017-3257-9 28190194
James D., Phelan J., Jesperson G., (2018a). First report of prunus virus F infecting sweet cherry (Prunus avium cv. Staccato) in Canada. Plant Dis. 102:1468. 10.1094/PDIS-12-17-1883-PDN
James D., Phelan J., Sanderson D., (2018b). Blackcurrant leaf chlorosis associated virus: evidence of the presence of circular RNA during infections. Viruses 10:260. 10.3390/v10050260 29762514
James D., Phelan J., Sanderson D., (2019). Detection by high-throughput sequencing and molecular characterization of complexes of fabaviruses infecting ‘Staccato(R)’ sweet cherry (Prunus avium) in Canada. Can. J. Plant Pathol. 41 519–534. 10.1080/07060661.2019.1566179
Jevremović D., Leposavić A., Paunović S., (2015). First report of blueberry mosaic associated virus in highbush blueberry in Serbia. J. Plant Pathol. 97:541.
Jevremović D., Leposavić A., Paunović S. A., (2019). Genetic diversity of Raspberry leaf blotch emaravirus in red raspberries from Serbia. Spanish J. Agric. Res. 17:e1004. 10.5424/sjar/2019171-13861
Jevremović D., Paunović S. A., (2019). First report of persimmon cryptic virus in persimmon in North Macedonia. J. Plant Pathol. 101:1285. 10.1007/s42161-019-00351-1
Jo Y., Lian S., Chu H., Cho J. K., Yoo S. H., Choi H., et al. (2018). Peach RNA viromes in six different peach cultivars. Sci. Rep. 8:1844. 10.1038/s41598-018-20256-w 29382911
Karanfil A., Korkmaz S., (2019). Geographic distribution and molecular characterization of Turkish isolates of the citrus chlorotic dwarf-associated virus. J. Plant Pathol. 3 621–628. 10.1007/s42161-019-00250-5
Kinoti W. M., Constable F. E., Nancarrow N., Dann A., Plummer K. M., Rodoni B., (2017). First report of Apricot vein clearing-associated virus (AVCaV) in Australia and in a New Host, Prunus cerasifera. Plant Dis. 101:1337. 10.1094/PDIS-12-16-1822-PDN
Koloniuk I., Sarkisova T., Petrzik K., Lenz O., Pøibylová J., Fránová J., et al. (2018a). Variability studies of two Prunus-infecting fabaviruses with the aid of high-throughput sequencing. Viruses 10 1–13. 10.3390/v10040204 29670059
Koloniuk I., Thekke-Veetil T., Reynard J. S., Pleško I. M., Pøibylová J., Brodard J., et al. (2018b). Molecular characterization of divergent closterovirus isolates infecting Ribes species. Viruses 10 369–380. 10.3390/v10070369 30002359
Kreuze J. F., Perez A., Untiveros M., Quispe D., Fuentes S., Barker I., et al. (2009). Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses. Virology 388 1–7. 10.1016/j.virol.2009.03.024 19394993
Lee R. F., (2015). Control of virus diseases of citrus. Adv. Virus Res. 91 143–173. 10.1016/bs.aivir.2014.10.002 25591879
León G., Roy A., Choudhary N., Brlansky R., (2017). Transmisión de leprosis de los cítricos por ácaros Brevipalpus yothersi a través de hospederos no cítricos. Corp.ica Cienc. Tecnol. Agropecu. 18 307–319. 10.21930/rcta.vol18_num2_art:633
Lim S., Baek D., Moon J. S., Cho I. S., Choi G. S., Do Y. S., et al. (2019). First report of apple luteovirus 1 and apple rubbery wood virus 1 on apple tree rootstocks in Korea. Plant Dis. 103:591. 10.1094/PDIS-08-18-1351-PDN
Liu K., Chen H., Zhou Y., Song Z., Li Z., (2017). Establishment of LAMP assay for detection of citrus chlorotic dwarfassociated virus (CCDaV). Acta Hortic. Sin. 44 999–1004. 10.16420/j.issn.0513-353x.2016-0535
Liu Z., Sunzhu Y. J., Zhou X. P., Hong J., Wu J. X., (2017). Monoclonal antibody-based serological detection of Citrus yellow vein clearing virus in citrus groves. J. Integr. Agric. 16 884–891. 10.1016/S2095-3119(16)61475-2
Liu Y., Wang Y., Wang Q., Zhang Y., Shen W., Li R., et al. (2019). Development of a sensitive and reliable reverse transcription droplet digital PCR assay for the detection of citrus yellow vein clearing virus. Arch. Virol. 164 691–697. 10.1007/s00705-018-04123-7 30535807
Loconsole G., Önelge N., Potere O., Giampetruzzi A., Bozan O., Satar S., et al. (2012a). Identification and characterization of Citrus yellow vein clearing virus, a putative new member of the genus Mandarivirus. Phytopathology 102 1168–1175. 10.1094/PHYTO-06-12-0140-R 22913410
Loconsole G., Saldarelli P., Doddapaneni H., Savino V., Martelli G. P., Saponari M., (2012b). Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae. Virology 432 162–172. 10.1016/j.virol.2012.06.005 22749878
Lu M. G., Zhang C., Zhang Z. X., Wang C. A., Li S. F., (2017). Nectarine stem-pitting-associated virus detected in peach trees in China. Plant Dis. 101:513. 10.1094/PDIS-09-16-1256-PDN
Macfarlane S., McGavin W., Tzanetakis I., (2015). Virus testing by PCR and RT-PCR amplification in berry fruit. Methods Mol. Biol. 1302 227–248. 10.1007/978-1-4939-2620-6_17
Maliogka V. I., Minafra A., Saldarelli P., Ruiz-García A. B., Glasa M., Katis N., et al. (2018). Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies. Viruses 10 436–459. 10.3390/v10080436 30126105
Marais A., Faure C., Mustafayev E., Barone M., Alioto D., Candresse T., (2015). Characterization by deep sequencing of Prunus virus T, a novel Tepovirus infecting Prunus species. Phytopathology 105 135–140. 10.1094/PHYTO-04-14-0125-R 25054616
Marais A., Faure C., Theil S., Candresse T., (2018). Molecular characterization of a novel species of capillovirus from Japanese apricot (Prunus mume). Viruses 10 1–8. 10.3390/v10040144 29570605
Martelli G. P., Flores R., Schneider B., (2011). CHAPTER 3: classification of pome and stone fruit viruses, viroids, and phytoplasmas. Virus Virus-Like Dis. Pome Stone Fruits 28 13–16. 10.1094/9780890545010.003
Martin R. R., Tzanetakis I. E., (2018). High risk blueberry viruses by region in north america; implications for certification, nurseries, and fruit production. Viruses 10 342–351. 10.3390/v10070342 29949859
Martin R. R., Zhou J., Tzanetakis I. E., (2011). Blueberry latent virus: an amalgam of the Partitiviridae and Totiviridae. Virus Res. 155 175–180. 10.1016/j.virusres.2010.09.020 20888379
Massart S., Antonio O., Jijakli H., Candresse T., (2014). Diagnosis of viral diseases and high throughput sequencing: towards a paradigm shift? | Diagnostic des viroses et séquençage haut débit: vers un changement de paradigme? Virologie 18:29.
Massart S., Candresse T., Gil J., Lacomme C., Predajna L., Ravnikar M., et al. (2017). A framework for the evaluation of biosecurity, commercial, regulatory, and scientific impacts of plant viruses and viroids identified by NGS technologies. Front. Microbiol. 8:45. 10.3389/fmicb.2017.00045 28174561
Matsumura E. E., Coletta-Filho H. D., Nourin S., Falk B. W., Nerva L., Oliveira T. S., et al. (2017). Deep sequencing analysis of RNAs from citrus plants grown in a citrus sudden death–affected area reveals diverse known and putative novel viruses. Viruses 9 1–19. 10.3390/v9040092 28441782
Mavriè Pleško I., Viršèek Marn M., Lazarova S., Peneva V., Širca S., Urek G., (2014). First detection of raspberry leaf blotch virus in red raspberry in Bulgaria. J. Plant Pathol. 96:437. 10.4454/JPP.V96I2.013 32896216
Meena R. P., Prabha K., Baranwal V. K., (2019). Genome characterization of citrus yellow vein-clearing virus: limited heterogeneity of viral genomes in Mandarivirus-infecting different citrus species. 3 Biotech 9:348. 10.1007/s13205-019-1876-4 31497466
Meena R. P., Prabha K., Baranwal V. K., (2020). Development of RT-PCR degenerate primers for the detection of two mandariviruses infecting citrus cultivars in India. J. Virol. Methods 275:113753. 10.1016/j.jviromet.2019.113753 31639373
Morelli M., Arli-Sokmen M., (2016). First report of persimmon cryptic virus in Turkey. J. Plant Pathol. 98:183. 10.4454/JPP.V98I1.047 32896216
Morelli M., Chiumenti M., De Stradis A., La Notte P., Minafra A., (2015). Discovery and molecular characterization of a new cryptovirus dsRNA genome from Japanese persimmon through conventional cloning and high-throughput sequencing. Virus Genes 50 160–164. 10.1007/s11262-014-1127-z 25315633
Morelli M., Giampetruzzi A., Laghezza L., Catalano L., Savino V. N., Saldarelli P., (2017). Identification and characterization of an isolate of apple green crinkle associated virus involved in a severe disease of quince (Cydonia oblonga, Mill.). Arch. Virol. 162 299–306. 10.1007/s00705-016-3074-6 27709400
Moreno P., Ambrós S., Albiach-Martí M. R., Guerri J., Peña L., (2008). Citrus tristeza virus: a pathogen that changed the course of the citrus industry. Mol. Plant Pathol. 9 251–268. 10.1111/j.1364-3703.2007.00455.x 18705856
Nakazono-Nagaoka E., Fujikawa T., Iwanami T., (2017). Nucleotide sequences of Japanese isolates of citrus vein enation virus. Arch. Virol. 162 879–883. 10.1007/s00705-016-3139-6 27848014
Navarro B., Zicca S., Minutolo M., Saponari M., Alioto D., Di Serio F., (2018). A negative-stranded RNA virus infecting citrus trees: the second member of a new genus within the order bunyavirales. Front. Microbiol. 9:2340. 10.3389/fmicb.2018.02340 30333811
Noda H., Yamagishi N., Yaegashi H., Xing F., Xie J., Li S., et al. (2017). Apple necrotic mosaic virus, a novel ilarvirus from mosaic-diseased apple trees in Japan and China. J. Gen. Plant Pathol. 83 83–90. 10.1007/s10327-017-0695-x
Önelge N., Bozan O., Gök-Güler P., (2016). First report of citrus yellow vein clearing virus infecting new natural host plants in Turkey. J. Plant Pathol. 98:373. 10.4454/JPP.V98I2.016 32896216
Peng Q., Lü R., Yang T., Lin H., Xi D., (2020). RT-PCR detection and sequence analysis of coat protein gene of actinidia virus 1 from Sichuan Province. Acta Hortic. Sin. 47 120–126. 10.16420/j.issn.0513-353x.2019-0166
Poudel B., Rollins P., Bishop D. T., Scott S. W., (2018). Incidence of viruses in two large-scale plantings of blackberry in South Carolina as detected through the use of sentinel plants and RT-PCR. Plant Heal. Prog. 19 19–22. 10.1094/PHP-12-17-0074-RS
Poudel B., Scott S. W., (2017). A report of cherry rusty mottle-associated virus in South Carolina. Australas. Plant Dis. Notes 12 10–13. 10.1007/s13314-017-0239-4
Rimbaud L., Dallot S., Gottwald T., Decroocq V., Jacquot E., Soubeyrand S., et al. (2015). Sharka epidemiology and worldwide management strategies: learning lessons to optimize disease control in perennial plants. Annu. Rev. Phytopathol. 53 357–378. 10.1146/annurev-phyto-080614-120140 26047559
Robinson T. S., Scherm H., Brannen P. M., Allen R., Michael C., (2016). Blueberry necrotic ring blotch virus in southern Highbush Blueberry: insights into in planta and in-field movement. Plant Dis. 100 1575–1579. 10.1094/PDIS-09-15-1035-RE 30686231
Roy A., Hartung J. S., Schneider W. L., Shao J., Leon G., Melzer M. J., et al. (2015). Role bending: complex relationships between viruses, hosts, and vectors related to citrus leprosis, an emerging disease. Phytopathology 105 1013–1025. 10.1094/PHYTO-12-14-0375-FI 25775106
Roy A., Stone A. L., Melzer M. J., Hartung J. S., Mavrodieva V. A., Nakhla M. K., et al. (2018). First report of a cilevirus associated with green ringspot on senescent hibiscus leaves in Tampa, Florida. Plant Dis. 102:1181. 10.1094/PDIS-11-17-1699-PDN
Rubio M., Martínez-Gómez P., Marais A., Sánchez-Navarro J. A., Pallás V., Candresse T., (2017). Recent advances and prospects in Prunus virology. Ann. Appl. Biol. 171 125–138. 10.1111/aab.12371
Ruiz-García A. B., Chamberland N., Martínez C., Massart S., Olmos A., (2017). First report of persimmon cryptic virus in Spain. J. Plant Pathol. 99:287. 10.4454/jpp.v99i1.3802 32896216
Sadeghi M. S., Afsharifar A., Izadpanah K., Loconsole G., de Stradis A., Martelli G. P., et al. (2016). Isolation and partial characterization of a novel cytorhabdovirus from citrus trees showing foliar symptoms in Iran. Plant Dis. 100 66–71. 10.1094/PDIS-02-15-0136-RE 30688578
Šafáøová D., Faure C., Marais A., Suchá J., Paprštein F., Navrátil M., et al. (2017). First report of prunus virus F infecting sour cherry in the Czech Republic. Plant Dis. 101:1828. 10.1094/PDIS-04-17-0469-PDN
Sanderson D., James D., (2019). Analysis of the genetic diversity of genome sequences of variants of apple hammerhead viroid. Can. J. Plant Pathol. 41 551–559. 10.1080/07060661.2019.1614672
Serra P., Messmer A., Sanderson D., James D., Flores R., (2018). Apple hammerhead viroid-like RNA is a bona fide viroid: autonomous replication and structural features support its inclusion as a new member in the genus Pelamoviroid. Virus Res. 249 8–15. 10.1016/j.virusres.2018.03.001 29510173
Sõmera M., Kvarnheden A., Desbiez C., Blystad D.-R., Sooväli P., Kundu J. K., et al. (2020). Sixty years after the first description: genome sequence and biological characterization of European wheat striate mosaic virus infecting cereal crops. Phytopathology 110 68–79. 10.1094/PHYTO-07-19-0258-FI 31631806
Sorrentino R., Marais A., Faure C., Theil S., Alioto D., Candresse T., (2018). First report of peach-associated luteovirus in nectarine (Prunus persica) in Italy. Plant Dis. 102:1465. 10.1094/PDIS-01-18-0012-PDN
Svanella-Dumas L., Marais A., Depasse F., Faure C., Lefebre M., Brans Y., et al. (2019). First report of Citrus Virus A (CiVA) infecting pear (Pyrus communis) in France. Plant Dis. 103:2703. 10.1111/ppa.12624
Szostek S. A., Wright A. A., Harper S. J., (2018). First report of apple hammerhead viroid in the United States, Japan, Italy, Spain, and New Zealand. Plant Dis. 102:2670. 10.1094/PDIS-04-18-0557-PDN
Tahzima R., Foucart Y., Massart S., De Jonghe K., (2019). First report of Prunus virus F infecting sweet cherry cultivars using high-throughput sequencing in Belgium. New Dis. Reports 40:7. 10.5197/j.2044-0588.2019.040.007
Thekke-Veetil T., Aboughanem-Sabanadzovic N., Keller K. E., Martin R. R., Sabanadzovic S., Tzanetakis I. E., (2013). Molecular characterization and population structure of blackberry vein banding associated virus, new ampelovirus associated with yellow vein disease. Virus Res. 178 234–240. 10.1016/j.virusres.2013.09.039 24126200
Thekke-Veetil T., Ho T., Keller K. E., Martin R. R., Tzanetakis I. E., (2014). A new ophiovirus is associated with blueberry mosaic disease. Virus Res. 189 92–96. 10.1016/j.virusres.2014.05.019 24874194
Thekke-Veetil T., Polashock J. J., Marn M. V., Plesko I. M., Schilder A. C., Keller K. E., et al. (2015). Population structure of blueberry mosaic associated virus: evidence of reassortment in geographically distinct isolates. Virus Res. 201 79–84. 10.1016/j.virusres.2015.02.022 25733053
Thekke-Veetil T., Tzanetakis I. E., (2017). Development of reliable detection assays for blueberry mosaic- and blackberry vein banding- associated viruses based on their population structures. J. Virol. Methods 248 191–194. 10.1016/j.jviromet.2017.07.014 28754569
Umer M., Liu J., You H., Xu C., Dong K., Luo N., et al. (2019). Genomic, morphological and biological traits of the viruses infecting major fruit trees. J. Viruses 11 1–12. 10.3390/v11060515 31167478
Wang Y., Zhai L., Wen S., Yang Z., Wang G., Hong N., (2020). Molecular characterization of a novel emaravrius infecting Actinidia spp. in China. Virus Res. 275:197736. 10.1016/j.virusres.2019.197736 31626876
Wang Y. J., Cui T. T., Huang A. J., Chen H. M., Li Z. A., Zhou C. Y., et al. (2016). Development and application of a quantitative RT-PCR approach for quantification of Citrus vein enation virus. Acta Hortic. Sin. 43 1613–1620. 10.16420/j.issn.0513-353x.2016-0150
Wen S. H., Zhu C. X., Hong N., Wang G. P., Yang Z. K., Wang Y. X., et al. (2019). First report of actinidia virus 1 infecting kiwifruit in China. Plant Dis. 103:780. 10.1094/PDIS-07-18-1123-PDN
Wright A. A., Cross A. R., Harper S. J., (2020). A bushel of viruses: identification of seventeen novel putative viruses by RNA-seq in six apple trees. PLoS One 15:e0227669. 10.1371/journal.pone.0227669 31929569
Wright A. A., Szostek S. A., Beaver-Kanuya E., Harper S. J., (2018). Diversity of three bunya-like viruses infecting apple. Arch. Virol. 163 3339–3343. 10.1007/s00705-018-3999-z 30132135
Wu J., Zhang S., Atta S., Yang C., Zhou Y., Di Serio F., et al. (2020). Discovery and survey of a new mandarivirus associated with leaf yellow mottle disease of citrus in Pakistan. Plant Dis. 104 1593–1600. 10.1094/pdis-08-19-1744-re 32357118
Wu L. P., Liu H. W., Bateman M., Liu Z., Li R., (2017). Molecular characterization of a novel luteovirus from peach identified by high-throughput sequencing. Arch. Virol. 162 2903–2905. 10.1007/s00705-017-3388-z 28550432
Xing F., Robe B. L., Zhang Z., Wang H. Q., Li S. F., (2018). Genomic analysis, sequence diversity, and occurrence of apple necrotic mosaic virus, a novel ilarvirus associated with mosaic disease of apple trees in china. Plant Dis. 102 1841–1847. 10.1094/PDIS-10-17-1580-RE 30125152
Xu Y., Yang L., Zhou J., Yang Y., Lu M., Li S., (2019). Multiplex RT-PCR to simultaneously detect three viruses that infect peach. Lett. Appl. Microbiol. 69 318–324. 10.1111/lam.13220 31529706
Yaegashi H., Oyamada S., Goto S., Yamagishi N., Isogai M., Ito T., et al. (2020). Simultaneous infection of sweet cherry with eight virus species including a new foveavirus. J. Gen. Plant Pathol. 86 134–142. 10.1007/s10327-019-00896-0
Yu Y. Q., Wu Q., Su H. N., Wang X. F., Cao M. J., Zhou C. Y., (2017). Small RNA deep sequencing reveals full-length genome of Citrus yellow vein clearing virus in Chongqing, China. J. Integr. Agric. 16 503–508. 10.1016/S2095-3119(16)61533-2
Zhang Y., Wang Y., Wang Q., Cao M., Zhou C., Zhou Y., (2018). Identification of Aphis spiraecola as a vector of Citrus yellow vein clearing virus. Eur. J. Plant Pathol. 152 841–844. 10.1007/s10658-018-1523-7
Zhang Y. H., Liu C. H., Wang Q., Wang Y. L., Zhou C. Y., Zhou Y., (2019). Identification of dialeurodes citri as a vector of citrus yellow vein clearing virus in China. Plant Dis. 103 65–68. 10.1094/PDIS-05-18-0911-RE 30444466
Zhang Y., Liu Y., Wang Y., Wang Q., He S., Li X., et al. (2019). Transmissibility of citrus yellow vein clearing virus by contaminated tools. J. Plant Pathol. 101 169–171. 10.1007/s42161-018-0141-8
Zhao H., Guan G., Zhou C., Yu Y., Wang H., Li Z., et al. (2017). Establishment and application of duplex RT-PCR for the detection of citrus yellow vein clearing virus and citrus tristeza virus. Acta Hortic. Sin. 44 1405–1414. 10.16420/j.issn.0513-353x.2017-0101
Zhao L., Yang W., Zhang Y., Wu Z., Wang Q.-C., Wu Y., (2019). Occurrence and molecular variability of kiwifruit viruses in actinidia deliciosa ‘xuxiang’ in the shaanxi province of China. Plant Dis. 103 1309–1318. 10.1094/PDIS-09-18-1570-RE 30907694
Zhen S., Kurth E. G., Peremyslov V. V., Changyong Z., Dolja V. V., (2015). Molecular characterization of a citrus yellow vein clearing virus strain from China. Arch. Virol. 160 1811–1813. 10.1007/s00705-015-2423-1 25913691
Zheng Y., Gao S., Padmanabhan C., Li R., Galvez M., Gutierrez D., et al. (2017). VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs. Virology 500 130–138. 10.1016/j.virol.2016.10.017 27825033
Zhou J., Zhang Z., Lu M., Xiao H., Li S., (2018). First report of peach-associated luteovirus from flat peach and nectarine in China. Plant Dis. 102:2669. 10.1094/PDIS-05-18-0797-PDN
Zhou Y., Chen H. M., Cao M. J., Wang X. F., Jin X., Liu K. H., et al. (2017). Occurrence, distribution, and molecular characterization of citrus yellow vein clearing virus in China. Plant Dis. 101 137–143. 10.1094/PDIS-05-16-0679-RE 30682317
Zhou Y., Chen H. M., Wang X. F., Li Z. A., Tang M., Zhou C. Y., (2015). Lack of evidence for seed transmission of Citrus yellow vein clearing virus despite its frequent detection in seed tissues. J. Plant Pathol. 97 519–521. 10.4454/JPP.V97I3.023 32896216
Zindović J., Viršèek Marn M., Mavriè Pleško I., (2015). First report of Raspberry leaf blotch virus in red raspberry in Montenegro. J. Plant Pathol. 97:398. 10.4454/JPP.V97I2.024 32896216
