FAOSTAT. 2017. Available online: Http://www.fao.org/faostat (accessed on 6 December 2018).
Köse, D.; Demirsoy, H.; Demirsoy, L.; Macit, İ. Characterization of cherry genotypes from North Anatolia. Acta Hortic. 2017, 1161, 309-314.
Rubio, M.; Martínez-Gómez, P.; Marais, A.; Sánchez-Navarro, J.A.; Pallás, V.; Candresse, T. Recent advances and prospects in Prunus virology. Ann. Appl. Biol. 2017, 171, 125-138.
Lenz, O.; Přibylová, J.; Fránová, J.; Koloniuk, I.; Špak, J. Identification and characterization of a new member of the genus Luteovirus from cherry. Arch. Virol. 2017, 162, 587-590.
Massart, S.; Olmos, A.; Jijakli, H.; Candresse, T. Current impact and future directions of high throughput sequencing in plant virus diagnostics. Virus Res. 2014, 188, 90-96.
Reeves, E.L.; Richards, B.L. A rusty mottle-like virus disease of the sweet cherry in Utah. Phytopathology 1946, 36, 409.
Wadley, B.N.; Nyland, G.; Rusty Mottle Group. Virus Diseases and Non-infectious Disorders of Stone Fruits in North America; Agriculture Handbook; Gilmer, R.M., Moore, J.D., Nyland, G., Welsh, M.F., Pine, T.S., Eds.; U.S. Department Agriculture: Washington, DC, USA, 1976; pp. 242-249.
Wadley, B. Rusty mottle virus complex in Utah. Phytopathology 1959, 49, 114.
Posnette, A.F.; Cropley, R. Necrotic rusty mottle virus disease of sweet cherries in Britain. Plant Pathol. 1964, 13, 20-22.
Nemeth, M. Virus, Mycoplasma and Rickettsia Diseases of Fruit Trees; Akademiai Kiado: Budapest, Hungary, 1986; 841 p.
Villamor, D.V.; Druffel, K.L.; Eastwell, K.C. Complete nucleotide sequence of a virus associated with rusty mottle disease of sweet cherry (Prunus avium). Arch. Virol. 2013, 158, 1805-1810.
Adams, M.J.; Candresse, T.; Hammond, J.; Kreuze, J.F.; Martelli, G.P.; Namba, S.; Pearson, M.N.; Ryu, K.H.; Saldarelli, P.; Yoshikawa, N. Family Betaflexiviridae. In Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses; King, A.M.Q., Adams, M.J., Carstens, E.B., Lefkowitz, E.J., Eds.; Elsevier Academic Press: London, UK, 2012; pp. 920-941.
ICTV. 2018. Available online: Http://ictvonline.Org/taxonomyHistory.Asp?taxnode_id=20151662&taxa_name=Robigovirus (accessed on 4 February 2019).
Villamor, D.E.; Susaimuthu, J.; Eastwell, K.C. Genomic analyses of cherry rusty mottle group and cherry twisted leaf-associated viruses reveal a possible new genus within the family Betaflexiviridae. Phytopathology 2015, 105, 399-408.
Jelkmann, W.; Rott, M.; Uyemoto, J.K. Cherry green ring mottle virus. In Virus and Virus-Like Diseases of Pome and Stone Fruits; Hadidi, A., Barba, M., Candresse, T., Jelkmann, W., Eds.; American Phytopathological Society Press: St Paul, MN, USA, 2011; pp. 115-117.
Morales, F.J.; Lozano, I.; Velasco, A.C.; Arroyave, J.A. Detection of a Fovea-like Virus in African Oil Palms Affected by a Lethal ‘Ringspot’ Disease in South America. J. Phytopathol. 2002, 150, 611-615.
Çağlayan, K.; Gazel, M.H. Virus and virus-like diseases of stone fruits in the Eastern Mediterranean area of Turkey. Acta. Virol. 1997, 42, 527-529.
Çağlayan, K.; Serçe, Ç.U.; Gazel, M.; Varveri, C. Prune dwarf virus. In Virus and Virus-like Diseases of Pome and Stone Fruits; Hadidi, A., Barba, M., Candresse, T., Jelkmann, W., Eds.; APS Press: Eagan, MN, USA, 2011; pp. 199-205.
Lozano, I.; Morales, F.J.; Martinez, A.K.; Peña, E.A. Molecular Characterization and Detection of African oil palm ringspot virus. J. Phytopathol. 2010, 158, 167-172.
Villamor, D.E.; Eastwell, K.C. Viruses associated with rusty mottle and twisted leaf diseases of sweet cherry are distinct species. Phytopathology 2013, 103, 1287-1295.
Le, S.Q.; Gascuel, O. An Improved General Amino Acid Replacement Matrix. Mol. Biol. Evol. 2008, 25, 1307-1320.
Dimmic, M.W.; Rest, J.S.; Mindell, D.P.; Goldstein, R.A. An amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. J. Mol. Evol. 2002, 55, 65-73.
Hammond, J.; Kreuze, J.; Pearson, M.N.; Salderelli, P. Family Betaflexiviridae. In Virus Taxonomy; King, A.M.Q., Adams, M.J., Carstens, E.B., Lefkowitz, E.J., Eds.; Elsewier: London, UK, 2011; pp. 920-941.
Zagula, K.R.; Aref, N.M.; Ramsdell, D.C. Purification, serology, and some properties of a mechanically transmissible virus associated with green ring mottle disease in peach and cherry. Phytopathology 1989, 79, 451-456.
Andrews, S. FastQC: A Quality Control Tool for High Throughput Sequence Data. 2010. Available online: Http://www.bioinformatics.babraham.ac.uk/projects/fastqc (accessed on 30 September 2018).
Nurk, S.; Bankevich, A.; Antipov, D.; Gurevich, A.A.; Korobeynikov, A.; Lapidus, A.; Prjibelski, A.D.; Pyshkin, A.; Sirotkin, A.; Sirotkin, Y., et al. Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. J. Comput. Biol. 2013, 20, 714-737.
Kim, H.; Park, D.; Hahn, Y. Identification of novel RNA viruses in alfalfa (Medicago sativa) an Alphapartitivirus, a Deltapartitivirus, and a Marafivirus. Gene 2018, 638, 7-12.
Kumar, S.; Stecher, G.; Tamura, K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 2016, 33, 1870-1874.
Edgar, R.C. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32, 1792-1797.
Reynard, J.S.; Schneeberger, P.H.; Frey, J.E.; Schaerer, S. Biological, Serological, and Molecular Characterization of a Highly Divergent Strain of Grapevine leafroll-associated virus 4 Causing Grapevine Leafroll Disease. Phytopathology 2015, 105, 1262-1269.
Massart, S.; Candresse, T.; Gil, J.; Lacomme, C.; Predajna, L.; Ravnikar, M.; Reynard, J.S.; Rumbou, A.; Saldarelli, P.; Škorić, D., et al. A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies. Front. Microbiol. 2017, 8, 45.
