Audrain, B., Farag, M.A., Ryu, C.M. and Ghigo, J.M. (2015) Role of bacterial volatile compounds in bacterial biology. FEMS Microbiol Rev 39, 222–233.
Baranska, A., Smolinska, A., Boots, A.W., Dallinga, J.W. and van Schooten, F.J. (2015) Dynamic collection and analysis of volatile organic compounds from the headspace of cell cultures. J Breath Res 9, 047102.
Bean, H.D., Dimandja, J.M. and Hill, J.E. (2012) Bacterial volatile discovery using solid phase microextraction and comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci 901, 41–46.
Bielecki, P., Muthukumarasamy, U., Eckweiler, D., Bielecka, A., Pohl, S., Schanz, A., Niemeyer, U., Oumeraci, T. et al. (2014) In vivo mRNA profiling of uropathogenic Escherichia coli from diverse phylogroups reveals common and group-specific gene expression profiles. MBio 5, doi: 10.1128/mBio.01075-14.
Blomberg, J., Schoenmakers, P.J., Beens, J. and Tijssen, R. (1997) Comprehensive two-dimensional gas chromatography (GCxGC) and its applicability to the characterization of complex (petrochemical) mixtures. J High Resolut Chromatogr 20, 539–544.
Boots, A.W., Smolinska, A., van Berkel, J.J., Fijten, R.R., Stobberingh, E.E., Boumans, M.L., Moonen, E.J., Wouters, E.F. et al. (2014) Identification of microorganisms based on headspace analysis of volatile organic compounds by gas chromatography-mass spectrometry. J Breath Res 8, 027106.
Borer, A., Saidel-Odes, L., Riesenberg, K., Eskira, S., Peled, N., Nativ, R., Schlaeffer, F. and Sherf, M. (2009) Attributable mortality rate for carbapenem-resistant Klebsiella pneumoniae bacteremia. Infect Control Hosp Epidemiol 30, 972–976.
Bos, L.D., Sterk, P.J. and Schultz, M.J. (2013) Volatile metabolites of pathogens: a systematic review. PLoS Pathog 9, e1003311.
Chaffin, D.O., Taylor, D., Skerrett, S.J. and Rubens, C.E. (2012) Changes in the Staphylococcus aureus transcriptome during early adaptation to the lung. PLoS ONE 7, e41329.
Chen, L.F., Anderson, D.J. and Paterson, D.L. (2012) Overview of the epidemiology and the threat of Klebsiella pneumoniae carbapenemases (KPC) resistance. Infect Drug Resist 5, 133–141.
Davies, S.J., Spanel, P. and Smith, D. (2014) Breath analysis of ammonia, volatile organic compounds and deuterated water vapor in chronic kidney disease and during dialysis. Bioanalysis 6, 843–857.
Deleo, F.R., Chen, L., Porcella, S.F., Martens, C.A., Kobayashi, S.D., Porter, A.R., Chavda, K.D., Jacobs, M.R. et al. (2014) Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae. Proc Natl Acad Sci USA 111, 4988–4993.
Doi, Y. and Paterson, D.L. (2015) Carbapenemase-producing Enterobacteriaceae. Semin Respir Crit Care Med 36, 74–84.
Elgaali, H., Hamilton-Kemp, T.R., Newman, M.C., Collins, R.W., Yu, K. and Archbold, D.D. (2002) Comparison of long-chain alcohols and other volatile compounds emitted from food-borne and related Gram positive and Gram negative bacteria. J Basic Microbiol 42, 373–380.
Gupta, N., Limbago, B.M., Patel, J.B. and Kallen, A.J. (2011) Carbapenem-resistant Enterobacteriaceae: epidemiology and prevention. Clin Infect Dis 53, 60–67.
Hagan, E.C., Lloyd, A.L., Rasko, D.A., Faerber, G.J. and Mobley, H.L. (2010) Escherichia coli global gene expression in urine from women with urinary tract infection. PLoS Pathog 6, e1001187.
Holt, K.E., Wertheim, H., Zadoks, R.N., Baker, S., Whitehouse, C.A., Dance, D., Jenney, A., Connor, T.R. et al. (2015) Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proc Natl Acad Sci U S A 112, E3574–E3581.
Julak, J., Stranska, E., Prochazkova-Francisci, E. and Rosova, V. (2000) Blood cultures evaluation by gas chromatography of volatile fatty acids. Med Sci Monit 6, 605–610.
Julak, J., Prochazkova-Francisci, E., Stranska, E. and Rosova, V. (2003) Evaluation of exudates by solid phase microextraction-gas chromatography. J Microbiol Methods 52, 115–122.
Junger, M., Vautz, W., Kuhns, M., Hofmann, L., Ulbricht, S., Baumbach, J.I., Quintel, M. and Perl, T. (2012) Ion mobility spectrometry for microbial volatile organic compounds: a new identification tool for human pathogenic bacteria. Appl Microbiol Biotechnol 93, 2603–2614.
Kitchel, B., Rasheed, J.K., Patel, J.B., Srinivasan, A., Navon-Venezia, S., Carmeli, Y., Brolund, A. and Giske, C.G. (2009) Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: clonal expansion of multilocus sequence type 258. Antimicrob Agents Chemother 53, 3365–3370.
Kiviranta, H., Tuomainen, A., Reiman, M., Laitinen, S., Liesivuori, J. and Nevalainen, A. (1998) Qualitative identification of volatile metabolites from two fungi and three bacteria species cultivated on two media. Cent Eur J Public Health 6, 296–299.
Kumar, V., Sun, P., Vamathevan, J., Li, Y., Ingraham, K., Palmer, L., Huang, J. and Brown, J.R. (2011) Comparative genomics of Klebsiella pneumoniae strains with different antibiotic resistance profiles. Antimicrob Agents Chemother 55, 4267–4276.
Lee, C.J., Demilo, A.B., Moreno, D.S. and Martinez, A.J. (1995) Analysis of the volatile components of a bacterial fermentation that is attractive to the Mexican fruit-fly, Anastrepha Ludens. J Agric Food Chem 43, 1348–1351.
Leopold, J.H., van Hooijdonk, R.T., Sterk, P.J., Abu-Hanna, A., Schultz, M.J. and Bos, L.D. (2014) Glucose prediction by analysis of exhaled metabolites – a systematic review. BMC Anesthesiol 14, 46.
Lopez, L.L., Rusconi, B., Gildersleeve, H., Qi, C., Mclaughlin, M., Scheetz, M.H., Seshu, J. and Eppinger, M. (2016) Genome sequences of five clinical isolates of Klebsiella pneumoniae. Genome Announc 4, doi: 10.1128/genomeA.00040-16.
Minh Tdo, C., Blake, D.R. and Galassetti, P.R. (2012) The clinical potential of exhaled breath analysis for diabetes mellitus. Diabetes Res Clin Pract 97, 195–205.
Mochalski, P., King, J., Haas, M., Unterkofler, K., Amann, A. and Mayer, G. (2014) Blood and breath profiles of volatile organic compounds in patients with end-stage renal disease. BMC Nephrol 15, 43.
Munoz-Price, L.S., Poirel, L., Bonomo, R.A., Schwaber, M.J., Daikos, G.L., Cormican, M., Cornaglia, G., Garau, J. et al. (2013) Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases. Lancet Infect Dis 13, 785–796.
Nizio, K.D., Perrault, K.A., Troobnikoff, A.N., Ueland, M., Shoma, S., Iredell, J.R., Middleton, P.G. and Forbes, S.L. (2016) In vitro volatile organic compound profiling using GCxGC-TOFMS to differentiate bacteria associated with lung infections: a proof-of-concept study. J Breath Res 10, 026008.
Nordmann, P., Cuzon, G. and Naas, T. (2009) The real threat of Klebsiella pneumoniae carbapenemase-producing bacteria. Lancet Infect Dis 9, 228–236.
Phillips, M., Cataneo, R.N., Chaturvedi, A., Kaplan, P.D., Libardoni, M., Mundada, M., Patel, U. and Zhang, X. (2013) Detection of an extended human volatome with comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry. PLoS ONE 8, e75274.
Pijls, K.E., Smolinska, A., Jonkers, D.M., Dallinga, J.W., Masclee, A.A., Koek, G.H. and van Schooten, F.J. (2016) A profile of volatile organic compounds in exhaled air as a potential non-invasive biomarker for liver cirrhosis. Sci Rep 6, 19903.
Podschun, R. and Ullmann, U. (1998) Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors. Clin Microbiol Rev 11, 589–603.
Rees, C.A., Smolinska, A. and Hill, J.E. (2016) The volatile metabolome of Klebsiella pneumoniae in human blood. J Breath Res 10, 027101.
Robacker, D.C. and Bartelt, R.J. (1997) Chemicals attractive to Mexican fruit fly from Klebsiella pneumoniae and Citrobacter freundii cultures sampled by solid-phase microextraction. J Chem Ecol 23, 2897–2915.
Saalberg, Y. and Wolff, M. (2016) VOC breath biomarkers in lung cancer. Clin Chim Acta 459, 5–9.
Sethi, S., Nanda, R. and Chakraborty, T. (2013) Clinical application of volatile organic compound analysis for detecting infectious diseases. Clin Microbiol Rev 26, 462–475.
Storer, M.K., Hibbard-Melles, K., Davis, B. and Scotter, J. (2011) Detection of volatile compounds produced by microbial growth in urine by selected ion flow tube mass spectrometry (SIFT-MS). J Microbiol Methods 87, 111–113.
Szramka, B., Kurlenda, J. and Bielawski, K. (1998) Hemolytic activity of Klebsiella pneumoniae and Klebsiella oxytoca. Med Dosw Mikrobiol 50, 207–213.
Tait, E., Perry, J.D., Stanforth, S.P. and Dean, J.R. (2014) Identification of volatile organic compounds produced by bacteria using HS-SPME-GC-MS. J Chromatogr Sci 52, 363–373.
Xu, Y., Gu, B., Huang, M., Liu, H., Xu, T., Xia, W. and Wang, T. (2015) Epidemiology of carbapenem resistant Enterobacteriaceae (CRE) during 2000-2012 in Asia. J Thorac Dis 7, 376–385.
Yamamoto, K., Watanabe, H. and Ishihama, A. (2014) Expression levels of transcription factors in Escherichia coli: growth phase- and growth condition-dependent variation of 90 regulators from six families. Microbiology 160, 1903–1913.
Zechman, J.M., Aldinger, S. and Labows, J.N. Jr (1986) Characterization of pathogenic bacteria by automated headspace concentration-gas chromatography. J Chromatogr 377, 49–57.
Zhou, K., Lokate, M., Deurenberg, R.H., Tepper, M., Arends, J.P., Raangs, E.G., Lo-Ten-Foe, J., Grundmann, H. et al. (2016) Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum beta-lactamase producing ST15 Klebsiella pneumoniae. Sci Rep 6, 20840.
Zhu, J., Bean, H.D., Jimenez-Diaz, J. and Hill, J.E. (2013) Secondary electrospray ionization-mass spectrometry (SESI-MS) breathprinting of multiple bacterial lung pathogens, a mouse model study. J Appl Physiol (1985) 114, 1544–1549.
