Anderson, M. J. 2001. A new method for non-parametric multivariate analysis of variance. Austral Ecology 26:32-46.
Anderson M. J., K. E. Ellingsen, and B. H. McArdle. 2006. Multivariate dispersion as a measure of beta diversity. Ecology Letters 9:683-693.
Araújo, M. B., and M. Luoto. 2007. The importance of biotic interactions for modelling species distributions under climate change. Global Ecology and Biogeography 16:743-753.
Aymerich, P., and J. Gosálbez. 2002. Factors de distribucio de Galemys pyrenaicus (Insectivora, Talpidae) a Catalunya. Orsis 17:21-35.
Belmaker, J., et al. 2015. Empirical evidence for the scale dependence of biotic interactions. Global Ecology and Biogeography 24:750-761.
Bertrand, A. 1994. Repartition geographique et ecologie alimentaire du desman des Pyrenees, Galemys pyrenaicus (Geoffroy. 1811) dans les Pyrenees francaises. These de doctorat, Universite Paul Sabatier de Toulouse, Toulouse, France.
Biffi, M., A. Charbonnel, L. Buisson, F. Blanc, M. Némoz, and P. Laffaille. 2016. Spatial differences across the French Pyrenees in the use of local habitat by the endangered semi-aquatic Pyrenean desman (Galemys pyrenaicus). Aquatic Conservation: Marine and Freshwater Ecosystems 26:761-774.
Borcard, D., F. Gillet, and P. Legendre. 2011. Numerical ecology with R. Springer, New York.
Boulangeat I., D. Gravel, and W. Thuiller. 2012. Accounting for dispersal and biotic interactions to disentangle the drivers of species distributions and their abundances. Ecology Letters 15:584-593.
Brown, L. E., A. M. Milner, and D. M. Hannah. 2006. Stability and persistence of alpine stream macroinvertebrate communities and the role of physicochemical environmental variables. Hydrobiologia 560:159-173.
Cáceres, M. D., and P. Legendre. 2009. Associations between species and groups of sites: indices and statistical inference. Ecology 90:3566-3574.
Castién, E., and J. Gosálbez. 1992. Distribucion geographica y habitats ocupados por Galemys pyrenaicus (Geoffroy. 1811) (Insectivora: Talpidae) en los Pireneos occidentales. Donana Acta Vertebrata 19:37-44.
Castién, E., and J. Gosálbez. 1995. Diet of Galemys pyrenaicus (Geoffroy. 1811) in the North of the Iberian Peninsula. Netherlands Journal of Zoology 45:422-430.
Castién, E., and J. Gosálbez. 1999. Habitat and food preferences in a guild of insectivorous mammals in the Western Pyrenees. Acta Theriologica 44:1-13.
Charbonnel, A., et al. 2014. Spatial replicates as an alternative to temporal replicates for occupancy modelling when surveys are based on linear features of the landscape. Journal of Applied Ecology 51:1425-1433.
Charbonnel, A., et al. 2015. Integrating hydrological features and genetically validated occurrence data in occupancy modelling of an endemic and endangered semi-aquatic mammal, Galemys pyrenaicus, in a Pyrenean catchment. Biological Conservation 184:182-192.
Charbonnel A., et al. 2016. Can recent global changes explain the dramatic range contraction of an endangered semi-aquatic mammal species in the French Pyrenees PLoS ONE 11:e0159941.
Churchfield, S., and L. Rychlik. 2006. Diets and coexistence in Neomys and Sorex shrews in Biaowiea forest, eastern Poland. Journal of Zoology 269:381-390.
Clavero, M., J. Prenda, and M. Delibes. 2003. Trophic diversity of the otter (Lutra lutra L.) in temperate and Mediterranean freshwater habitats. Journal of Biogeography 30:761-769.
Deagle, B. E., S. N. Jarman, E. Coissac, F. Pompanon, and P. Taberlet. 2014. DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match. Biology Letters 10:20140562.
Dufrêne, M., and P. Legendre. 1997. Species assemblages and indicator species: The need for a flexible asymmetrical approach. Ecological Monographs 67:345-366.
Evangelista, C., A. Boiche, A. Lecerf, and J. Cucherousset. 2014. Ecological opportunities and intraspecific competition alter trophic niche specialization in an opportunistic stream predator. The Journal of Animal Ecology 83:1025-1034.
Fernandes, M., J. Herrero, S. Aulagnier, and G. Amori. 2008. Galemys pyrenaicus. IUCN 2014: The IUCN Red List of Threatened Species. Version 2014. 3. www. iucnredlist. org. Accessed 8 November 2014.
Finn, D. S., K. Khamis, and A. M. Milner. 2013. Loss of small glaciers will diminish beta diversity in Pyrenean streams at two levels of biological organization. Global Ecology and Biogeography 22:40-51.
Folmer, O., M. Black, W. Hoeh, R. Lutz, and R. Vrijenhoek. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3:294-299.
Füreder, L., M. Wallinger, and R. Burger. 2004. Longitudinal and seasonal pattern of insect emergence in alpine streams. Aquatic Ecology 39:67-78.
Galan, M., M. Pagès, and J. F. Cosson. 2012. Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples. PLoS ONE 7:e48374.
Gillet, F. 2015. Genetique et biologie de la conservation du desman des Pyrenees (Galemys pyrenaicus) en France. These de doctorat, Universite Paul Sabatier de Toulouse, Toulouse, France and Universite de Liege, Liege, Belgique.
Gillet, F., et al. 2015. A new method to identify the endangered Pyrenean desman (Galemys pyrenaicus) and to study its diet, using next generation sequencing from faeces. Mammalian Biology 80:505-509.
Gillet, F., et al. 2016. Genetic monitoring of the endangered Pyrenean desman (Galemys pyrenaicus) in the Aude River, France. Belgian Journal of Zoology 146:44-52.
Gisbert, J., and R. García-Perea. 2014. Historia de la regresion del desman iberico Galemys pyrenaicus (E. Geoffroy Saint-Hilaire. 1811) en el Sistema Central (Peninsula Iberica). Conservation and management of semi-aquatic mammals of southwestern Europe. Munibe Monographs: Nature Series 3:19-35.
Hajibabaei, M., S. Shokralla, X. Zhou, G. A. Singer, and D. J. Baird. 2011. Environmental barcoding: A next-generation sequencingapproach for biomonitoring applications using river benthos. PLoS ONE 6:e17497.
Hebert, P. D. N., E. H. Penton, J. M. Burns, D. H. Janzen, and W. Hallwachs. 2004. Ten species in one : DNA barcoding reveals cryptic species in the Neotropical skipper butterfly Astraptes fulgerator. PNAS 101:14812-14817.
Johnson, R. C., H.-S. Jin, M. M. Carreiro, and J. D. Jack. 2013. Macroinvertebrate community structure, secondary production and trophic-level dynamics in urban streams affected by non-pointsource pollution. Freshwater Biology 58:843-857.
Kissling, W. D., et al. 2012. Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents. Journal of Biogeography 39:2163-2178.
Kraus, J. M., J. F. Pomeranz, A. S. Todd, D. M. Walters, T. S. Schmidt, and R. B. Wanty. 2016. Aquatic pollution increases use of terrestrial prey subsidies by stream fish. Journal of Applied Ecology 53:44-53.
Lindahl, T. 1993. Instability and decay of the primary structure of DNA. Nature 362:709-715.
McInnes, J. C., R. Alderman, B. E. Deagle, M.-A. Lea, B. Raymond, and S. N. Jarman. 2017. Optimised scat collection protocols for dietary DNA metabarcoding in vertebrates. Methods in Ecology and Evolution 8:192-202.
Melero, Y., P. Aymerich, J. J. Luque-Larena, and J. Gosálbez. 2012. New insights into social and space use behaviour of the endangered Pyrenean desman (Galemys pyrenaicus). European Journal of Wildlife Research 58:185-193.
Melero, Y., P. Aymerich, G. Santulli, and J. Gosálbez. 2014. Activity and space patterns of Pyrenean desman (Galemys pyrenaicus) suggest non-aggressive and non-territorial behaviour. European Journal of Wildlife Research 60:707-715.
Milardi, M., S. M. Thomas, and K. K. Kahilainen. 2016. Reliance of brown trout on terrestrial prey varies with season but not fish density. Freshwater Biology 61:1143-1156.
Murgatroyd, M., G. Avery, L. G. Underhill, and A. Amar. 2016. Adaptability of a specialist predator: The effects of land use on diet diversification and breeding performance of Verreaux's eagles. Journal of Avian Biology 47:834-845.
Muséum national d'Histoire naturelle. 2003-2017. Inventaire National du Patrimoine Naturel. https://inpn. mnhn. fr. Accessed 15 May 2016.
Némoz, M., A. Bertrand, M. Sourie, and P. Arlot. 2011. A French conservation action plan for the Pyrenean desman Galemys pyrenaicus. Galemys 23:47-50.
OPIE-Benthos. 2017. Office Pour les Insectes et leur Environnement. http://www. opie-benthos. fr/opie/insecte. php. Accessed 15 May 2016.
Pallottini, M., et al. 2017. Macroinvertebrate functional trait responses to chemical pollution in agricultural-industrial landscapes. River Research and Applications 33:505-513.
Paul, M. J., and J. L. Meyer. 2001. Streams in the urban landscape. Annual Review of Ecology and Systematics 32:333-365.
Pearson, R. G., and T. P. Dawson. 2003. Predicting the impacts of climate change on the distribution of species: Are bioclimate envelope models useful Global Ecology and Biogeography 12:361-371.
Piñol, J., V. San Andrés, E. L. Clare, G. Mir, and W. O. C. Symondson. 2014. A pragmatic approach to the analysis of diets of generalist predators: The use of next-generation sequencing with no blocking probes. Molecular Ecology Resources 14:18-26.
Piry, S., E. Guivier, A. Realini, and J. F. Martin. 2012. |SE|S|AM|E| barcode: NGS-oriented software for amplicon characterization-application to species and environmental barcoding. Molecular Ecology Resources 12:1151-1157.
Pompanon, F., B. E. Deagle, W. O. Symondson, D. S. Brown, S. N. Jarman, and P. Taberlet. 2012. Who is eating what: diet assessmentusing next generation sequencing. Molecular Ecology 21:1931-1950.
R Developm ent Core Team. 2014. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. www. R-project. org/. Accessed 10 May 2016.
Ratnasingham, S., and P. D. Hebert. 2007. Bold: The barcode of life data system (http://www. barcodinglife. org). Molecular Ecology Notes 7:355-364.
Real, R., et al. 2009. Conservation biogeography of ecologically interacting species: The case of the Iberian lynx and the European rabbit. Diversity and Distributions 15:390-400.
Reid, H. E., G. J. Brierley, and I. K. G. Boothroyd. 2010. Influence of bed heterogeneity and habitat type on macroinvertebrate uptake in peri-urban streams. International Journal of Sediment Research 25:203-220.
Rodrigues, A. S., J. D. Pilgrim, J. F. Lamoreux, M. Hoffmann, and T. M. Brooks. 2006. The value of the IUCN red list for conservation. Trends in Ecology & Evolution 21:71-76.
Ruiz-Olmo, J., J. M. López-Martín, and S. Palazón. 2001. The influence of fish abundance on the otter (Lutra lutra) populations in Iberian Mediterranean habitats. Journal of Zoology 254:325-336.
Santamarina, J. 1993. Feeding ecology of a vertebrate assemblage inhabiting a stream of NW Spain (Riobo; Ulla Basin). Hydrobiologia 252:175-191.
Santamarina, J., and J. Guitian. 1988. Quelques donnees sur le regime alimentaire du desman (Galemys pyrenaicus) dans le nordouest de l'Espagne. Mammalia 52:302-307.
Sheppard, S. K., J. Bell, K. D. Sunderland, J. Fenlon, D. Skervin, and W. O. Symondson. 2005. Detection of secondary predation by PCR analyses of the gut contents of invertebrate generalist predators. Molecular Ecology 14:4461-4468.
Soberón, J., and A. T. Peterson. 2005. Interpretation of models of fundamental ecological niches and species' distributional areas. Biodiversity Informatics 2:1-10.
Tachet, H., P. Richoux, M. Bournaud, and P. Usseglio-Polatera. 2000. Invertebres d'eau douce. Systematique, Biologie, Ecologie. CNRS Editions, Paris, France.
Usseglio-Polatera, P., M. Bournaud, P. Richoux, and H. Tachet. 2000. Biological and ecological traits of benthic freshwater macroinvertebrates: relationships and definition of groups with similar traits. Freshwater Biology 43:175-205.
Wisz, M. S., et al. 2013. The role of biotic interactions in shaping distributions and realised assemblages of species: implications for species distribution modelling. Biological Reviews of the Cambridge Philosophical Society 88:15-30.
