Development of nuclear SNP markers for the timber tracking of the African tree species Sapelli, Entandrophragma cylindricum

Blanc-Jolivet, Céline; Kersten, Birgit; Bourland, Nils; Guichoux, Erwan; Delcamp, Adline; Doucet, Jean-Louis; Degen, Bernd

doi:10.1007/s12686-017-0872-4

Article (Scientific journals)

Development of nuclear SNP markers for the timber tracking of the African tree species Sapelli, Entandrophragma cylindricum

Blanc-Jolivet, Céline; Kersten, Birgit; Bourland, Nils et al.

2018 • In Conservation Genetics Resources, p. 3

Peer Reviewed verified by ORBi

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https://hdl.handle.net/2268/215121

DOI
10.1007/s12686-017-0872-4

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Keywords :

Single nucleotide polymorphism; Entandrophragma; RAD sequencing; MassARRAY; Timber tracking

Abstract :

[en] We describe the development of new nuclear SNP markers for the genetic timber tracking of the geographical origin of Sapelli, Entandrophragma cylindricum (Meliaceae). Restriction associated DNA sequencing (RADseq) of two reference individuals yielded 1131 putative SNPs. Among those, 131 were selected to design four MassARRAY multiplexes and screened at 178 individuals. Seventy-two loci were selected for further use in genetic tracking.

Disciplines :

Environmental sciences & ecology
Phytobiology (plant sciences, forestry, mycology...)

Author, co-author :

Blanc-Jolivet, Céline

Kersten, Birgit

Bourland, Nils

Guichoux, Erwan

Delcamp, Adline

Doucet, Jean-Louis ; Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Laboratoire de Foresterie des régions trop. et subtropicales

Degen, Bernd

Language :

English

Title :

Development of nuclear SNP markers for the timber tracking of the African tree species Sapelli, Entandrophragma cylindricum

Publication date :

2018

Journal title :

Conservation Genetics Resources

ISSN :

1877-7252

eISSN :

1877-7260

Publisher :

Springer, Dordrecht, Netherlands

Pages :

Peer reviewed :

Peer Reviewed verified by ORBi

Available on ORBi :

since 17 October 2017

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Bibliography

Blanc-Jolivet C, Liesebach M (2015) Tracing the origin and species identity of Quercus robur and Quercus petraea in Europe: a review. Silvae Genetica 64(4):182–193
Blanc-Jolivet C, Kersten B, Daïnou K, Hardy O, Guichoux E, Delcamp A, Degen B (2017) Development of nuclear SNP markers for genetic tracking of Iroko, Milicia excelsa and Milicia regia. Conserv Genetic Resour. doi: 10.1007/s12686-017-0716-2
Degen B, Blanc-Jolivet C, Stierand K, Gillet E (2017) A nearest neighbour approach by genetic distance to the assignment of individual trees to geographic origin. Forensic Sci Int Genet 27:132–141
Dumolin S, Demesure B, Petit RJ (1995) Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theor Appl Genet 91(8):1253–1256
Garcia F, Noyer JL, Risterucci AM, Chevallier MH (2004) Genotyping of mature trees of Entandrophragma cylindricum with microsatellites. J Hered 95(5):454–457
Gregorius H-R (1987) The relationship between the concepts of genetic diversity and differentiation. Theor Appl Genet 74(3):397–401
Jardine DI, Blanc-Jolivet C, Dixon RRM, Dormontt EE, Dunker B, Gerlach J et al (2016) Development of SNP markers for Ayous (Triplochiton scleroxylon K. Schum) an economically important tree species from tropical West and Central Africa. Conserv Genetic Resour 8(2):129–139
Jolivet C, Degen B (2012) Use of DNA fingerprints to control the origin of sapelli timber (Entandrophragma cylindricum) at the forest concession level in Cameroon. Forensic Sci Int Genet 6(4):487–493
Lourmas M, Kjellberg F, Dessard H, Joly HI, Chevallier MH (2007) Reduced density due to logging and its consequences on mating system and pollen flow in the African mahogany Entandrophragma cylindricum. Heredity 99(2):151–160
Pakull B, Mader M, Kersten B, Ekue MRM, Dipelet UGB, Paulini M et al (2016) Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp. Conserv Genetic Resour 8(3):283–297
Rannala B, Mountain JL (1997) Detecting immigration by using multilocus genotypes. Proc Natl Acad Sci USA 94(17):9197–9201