[en] In PBP4a, a Bacillus subtilis class-C1 penicillin-binding protein (PBP), four clustered lysine
(K) residues, K86, K114, K119, and K265, protrude from domain II. Replacement of these
amino acids with glutamine (Q) residues by site-directed mutagenesis yielded Mut4KQ
PBP4a. When produced in Escherichia coli without its predicted Sec-signal peptide, wildtype
(WT) PBP4a was found mainly associated with the host cytoplasmic membrane,
whereas Mut4KQ PBP4a remained largely unbound. After purification, the capacities of the
two proteins to bind to B. subtilis membranes were compared. The results were similar to
those obtained in E. coli: in vitro, a much higher percentage of WT PBP4a than of Mut4KQ
PBP4a was found to interact with B. subtilis membranes. Immunodetection of PBP4a in B.
subtilis membrane extracts revealed that a processed form of this PBP (as indicated by its
size) associates with the B. subtilis cytoplasmic membrane. In the absence of any amphiphilic
peptide in PBP4a, the crown of positive charges on the surface of domain II is likely
responsible for the cellular localization of this PBP and its attachment to the cytoplasmic
membrane.
Sauvage, Eric ; Université de Liège > Centre d'ingénierie des protéines
Dauvin, Marjorie ; Université de Liège > Département des sciences de la vie > Physiologie et génétique bactériennes
Joris, Bernard ; Université de Liège > Département des sciences de la vie > Physiologie et génétique bactériennes
Duez, Colette ; Université de Liège > Centre d'ingénierie des protéines
Language :
English
Title :
A lysine cluster in domain II of Bacillus subtilis PBP4a plays a role in the membrane attachment of this C1-PBP
Alternative titles :
[fr] Un groupement de lysines en surface du domaine II du PBP4a de Bacillus subtilis joue un rôle dans l'attachement de ce PBP C1 à la membrane
Publication date :
13 October 2015
Journal title :
PLoS ONE
eISSN :
1932-6203
Publisher :
Public Library of Science, San Franscisco, United States - California
Peer reviewed :
Peer Reviewed verified by ORBi
Name of the research project :
Etude des PBP de classe C
Funders :
IAP P6/19 and P7/44 F.R.S.-FNRS - Fonds de la Recherche Scientifique FRIA - Fonds pour la Formation à la Recherche dans l'Industrie et dans l'Agriculture
Funding text :
This work was supported by the Belgian Program on Interuniversity Poles of Attraction by the Prime Minister’s Office, Science Policy Programming
(IAP n°P6/19 and P7/44).
Sauvage E, Duez C, Herman R, Kerff F, Petrella S, Anderson JW, et al. Crystal structure of the Bacillus subtilis penicillin-binding protein 4a, and its complex with a peptidoglycan mimetic peptide. J Mol Biol. 2007/06/22 ed. 2007;371:528-539. S0022-2836 (07) 00731-0 [pii] doi: 10.1016/j.jmb.2007.05.071 PMID: 17582436
Dusart J, Marquet A, Ghuysen JM, Frère JM, Moreno R, Leyh-Bouille M, et al. DD-carboxypeptidasetranspeptidase and killing site of beta-lactam antibiotics in Streptomyces strains R39, R61, and K11. Antimicrob Agents Chemother. 1973;3:181-187. doi: 10.1128/AAC.3.2.181 PMID: 4790585
Duez C, Vanhove M, Gallet X, Bouillenne F, Docquier JD, Brans A, et al. Purification and characterization of PBP4a, a new low-molecular-weight penicillin-binding protein from Bacillus subtilis. J Bacteriol. 2001/02/13 ed. 2001;183:1595-1599. doi: 10.1128/JB.183.5.1595-1599.2001 PMID: 11160090
Frère JM, Leyh-Bouille M, Ghuysen JM, Nieto M, Perkins HR. Exocellular DD-carboxypeptidasestranspeptidases from Streptomyces. Methods Enzym. 1976/01/01 ed. 1976;45:610-636. Available: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list-uids= 1012018
Papadopoulos JS, Agarwala R. COBALT: Constraint-based alignment tool for multiple protein sequences. Bioinformatics. 2007;23:1073-1079. doi: 10.1093/bioinformatics/btm076 PMID: 17332019
Waterhouse AM, Procter JB, Martin DM a, Clamp M, Barton GJ. Jalview Version 2-A multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009;25:1189-1191. doi: 10.1093/bioinformatics/btp033 PMID: 19151095
Pedersen LB, Murray T, Popham DL, Setlow P. Characterization of dacC, which encodes a new lowmolecularweight penicillin-binding protein in Bacillus subtilis. J Bacteriol. 1998/09/12 ed. 1998;180:4967-4973. Available: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list-uids=9733705 PMID: 9733705
Scheffers DJ, Jones LJ, Errington J. Several distinct localization patterns for penicillin-binding proteins in Bacillus subtilis. Mol Microbiol. 2004/01/21 ed. 2004;51:749-764. 3854 [pii] PMID: 14731276
Duez C, Zervosen A, Teller N, Melkonian R, Banzubazé E, Bouillenne F, et al. Characterization of the proteins encoded by the Bacillus subtilis yoxA-dacC operon. FEMS Microbiol Lett. 2009/09/18 ed. 2009;300:42-47. FML1761 [pii] doi: 10.1111/j.1574-6968.2009.01761.x PMID: 19758330
Lorca GL, Chung YJ, Barabote RD, Weyler W, Schilling CH, Saier MH. Catabolite repression and activation in Bacillus subtilis: Dependency on CcpA, HPr, and HprK. J Bacteriol. 2005/11/04 ed. 2005;187:7826-7839. doi: 10.1128/JB.187.22.7826-7839.2005 PMID: 16267306
Otto A, Bernhardt J, Meyer H, Schaffer M, Herbst FA, Siebourg J, et al. Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis. Nat Commun. 2011/01/27 ed. 2010;1:137. doi: 10. 1038/ncomms1137 PMID: 21266987
Sauvage E, Herman R, Petrella S, Duez C, Bouillenne F, Frère JM, et al. Crystal structure of the Actinomadura R39 DD-peptidase reveals new domains in penicillin-binding proteins. J Biol Chem. 2005/07/01 ed. 2005;280:31249-31256. doi: 10.1074/jbc. M503271200 PMID: 15987687
Nguyen-Distèche M, Leyh-Bouille M, Ghuysen JM. Isolation of the membrane-bound 26 000-Mr penicillinbinding protein of Streptomyces strain K15 in the form of a penicillin-sensitive D-alanyl-D-alaninecleaving transpeptidase. Biochem J. 1982;207:109-115. Available: http://www.ncbi.nlm.nih.gov/pubmed/7181854 PMID: 7181854
Fonzé E, Vermeire M, Nguyen-Distèche M, Brasseur R, Charlier P. The crystal structure of a penicilloylserine transferase of intermediate penicillin sensitivity. The DD-transpeptidase of Streptomyces K15. J Biol Chem. 1999;274:21853-21860. Available: http://www.ncbi.nlm.nih.gov/pubmed/10419503 PMID: 10419503
Jackson ME, Pratt JM. An 18 amino acid amphiphilic helix forms the membrane-anchoring domain of the Escherichia coli penicillin-binding protein 5. Mol Microbiol. 1987;1:23-28. PMID: 3330754
Van der Linden MP, de Haan L, Hoyer MA, Keck W. Possible role of Escherichia coli penicillin-binding protein 6 in stabilization of stationary-phase peptidoglycan. J Bacteriol. 1992;174:7572-7578. Available: http://www.ncbi.nlm.nih.gov/pubmed/1447130 PMID: 1447130
Siligardi G, Harris F, Phoenix DA. Alpha-helical conformation in the C-terminal anchoring domains of E. coli penicillin-binding proteins 4, 5 and 6. Biochim Biophys Acta. 1997;1329:278-284. Available: http://www.ncbi.nlm.nih.gov/pubmed/9371419 PMID: 9371419
Judd RC, Strange JC, Pettit RK, Shafer WM. Identification and characterization of a conserved outermembrane protein of Neisseria gonorrhoeae. Mol Microbiol. 1991/05/01 ed. 1991;5:1091-1096. Available: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list-uids=1956286 PMID: 1956286
Yasukawa H, Kuroita T, Tamura K, Yamaguchi K. Identification of a penicillin-sensitive carboxypeptidase in the cellular slime mold Dictyostelium discoideum. Biol Pharm Bull. 2003/07/05 ed. 2003;26:1018-1020. Available: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db= PubMed&dopt=Citation&list-uids=12843630 PMID: 12843630