Jha G, Thakur K, Thakur P: The Venturia apple pathosystem: pathogenicity mechanisms and plant defense responses. J Biomed Biotechnol 2009, 2009:1-10.
Sauphanor B, Dirwimmer C: Ecophyto R&D vers des systèmes de culture économes en produits phytosanitaires. In Analyse comparative de différents systèmes en arboriculture fruitière. Tome IV. Edited by: MEEDDAT-MAP-INRA. France; 2009.
Bus VGM, Rikkerink EHA, Caffier V, Durel CE, Plummer KM: Revision of the nomenclature of the differential host-pathogen interactions of Venturia inaequalis and Malus . Annu Rev Phytopathol 2011, 49:391-413. 10.1146/annurev-phyto-072910-095339
Poland JA, Balint-Kurti PJ, Wisser RJ, Pratt RC, Nelson RJ: Shades of gray: the world of quantitative disease resistance. Trends Plant Sci 2009, 14:21-29. 10.1016/j.tplants.2008.10.006
Chevalier M, Lespinasse Y, Renaudin S: A microscopic study of different classes of symptoms by the Vf gene in apple for resistance to scab ( Venturia inaequalis ). Plant Pathol 1991, 40:249-256. 10.1111/j.1365-3059.1991.tb02374.x
Parisi L, Orts R, Rivenez-Damboise MO, Lefeuvre M, Lagarde MP: Protection intégrée du verger de pommiers de l'an 2000. Tavelure et oïdium: variétés résistantes et lutte raisonnée. Arboriculture Fruitière 1995, 486:25-29.
Lê Van A, Gladieux P, Lemaire C, Cornille A, Giraud T, Durel CE, Caffier V, Le Cam B: Evolution of pathogenicity traits in the apple scab fungal pathogen in response to the domestication of its host. Evol Appl 2012, 5:694-704. 10.1111/j.1752-4571.2012.00246.x
Parisi L, Lespinasse Y, Guillaumes J, Krüger J: A new race of Venturia inaequalis virulent to apples with resistance due to the Vf gene. Phytopathology 1993, 83:533-537. 10.1094/Phyto-83-533
Lateur M, Wagemans C, Populer C: Evaluation of fruit tree genetic resources as sources of polygenic scab resistance in an apple breeding programme. Acta Hortic 1998, 484:35-42.
Durel CE, Parisi L, Laurens F, Van de Weg WE, Liebhard R, Jourjon MF: Genetic dissection of partial resistance to race 6 of Venturia inaequalis in apple. Genome 2003, 46:224-234. 10.1139/g02-127
Liebhard R, Koller B, Patocchi A, Kellerhals M, Pfammatter W, Jermini M, Gessler C: Mapping quantitative field resistance against apple scab in a 'Fiesta' x 'Discovery' progeny. Phytopathology 2003, 93:493-501. 10.1094/PHYTO.2003.93.4.493
Calenge F, Faure A, Goerre M, Gebhardt C, Van de Weg WE, Parisi L, Durel CE: Quantitative Trait Loci (QTL) analysis reveals both broad-spectrum and isolate-specific QTL for scab resistance in an apple progeny challenged with eight isolates of Venturia inaequalis . Phytopathology 2004, 94:370-379. 10.1094/PHYTO.2004.94.4.370
Soufflet-Freslon V, Gianfranceschi L, Patocchi A, Durel CE: Inheritance studies of apple scab resistance and identification of Rvi14 , a new major gene that acts together with other broad-spectrum QTL. Genome 2008, 51:657-667. 10.1139/G08-046
Vinatzer BA, Patocchi A, Gianfranceschi L, Tartarini S, Zhang HB, Gessler C, Sansavini S: Apple contains receptor-like genes homologous to the Cladiosporium fulvum resistance gene family of tomato with a cluster of genes cosegregating with Vf apple scab resistance. Mol Plant Microbe In 2001, 14:508-515. 10.1094/MPMI.2001.14.4.508
Galli P, Patocchi A, Broggini GA, Gessler C: The Rvi15 (Vr2) apple scab resistance locus contains three TIR-NBS-LRR genes. Mol Plant Microbe In 2010, 23:608-617. 10.1094/MPMI-23-5-0608
Belfanti E, Silfverberg-Dilworth E, Tartarini S, Patocchi A, Barbieri M, Zhu J, Vinatzer BA, Gianfranceschi L, Gessler C, Sansavini S: The HcrVf2 gene from a wild apple confers scab resistance to a transgenic cultivated variety. Proc Natl Acad Sci USA 2004, 101:886-890. 10.1073/pnas.0304808101
Joshi SG, Schaart JG, Groenwold R, Jacobsen E, Schouten HJ, Krens FA: Functional analysis and expression profiling of HcrVf1 and HcrVf2 for development of scab resistant cisgenic and intragenic apples. Plant Mol Biol 2011, 75:579-591. 10.1007/s11103-011-9749-1
Schouten HJ, Brinkhuis J, van der Burgh A, Schaart JG, Groenwold R, Broggini GA, Gessler C: Cloning and functional characterization of the Rvi15 ( Vr2 ) gene for apple scab resistance. Tree Genet Genomes 2014, 10:251-260. 10.1007/s11295-013-0678-9
Malnoy M, Xu M, Borejsza-Wysocka E, Korban SS, Aldwinckle HS: Two receptor-like genes, Vfa1 and Vfa2 , confer resistance to the fungal pathogen Venturia inaequalis inciting apple scab disease. Mol Plant Microbe In 2008, 21:448-458. 10.1094/MPMI-21-4-0448
Komjanc M, Festi S, Rizzotti L, Cervone F, De Lorenzo G: A leucine-rich repeat receptor-like protein kinase (LRPKm1) gene is induced in Malus x domestica by Venturia inaequalis infection and salicylic acid treatment. Plant Mol Biol 1999, 40:945-957. 10.1023/A:1006275924882
Cova V, Paris R, Passerotti S, Zini E, Gessler C, Pertot I, Loi N, Musetti R, Komjanc M: Mapping and functional analysis of four apple receptor-like protein kinases related to LRPKm1 in HcrVf2 -transgenic and wild-type apple plants. Tree Genet Genomes 2010, 6:389-403. 10.1007/s11295-009-0257-2
Gau AE, Koutb M, Piotrowski M, Kloppstech K: Accumulation of pathogenesis-related proteins in the apoplast of a susceptible cultivar of apple ( Malus domestica cv. Elstar) after infection by Venturia inaequalis and constitutive expression of PR genes in the resistant cultivar Remo. Eur J Plant Pathol 2004, 110:703-711.
Degenhardt J, Al-Masri NA, Kurkcuoglu S, Szankowski I, Gau AE: Characterization by suppression subtractive hybridization of transcripts that are differentially expressed in leaves of apple scab resistant and susceptible cultivars of Malus domestica . Mol Genet Genomics 2005, 273:326-335. 10.1007/s00438-005-1136-7
Paris R, Cova V, Pagliarani G, Tartarini S, Komjanc M, Sansavini S: Expression profiling in HcrVf2 -transformed apple plants in response to Venturia inaequalis . Tree Genet Genomes 2009, 5:81-91. 10.1007/s11295-008-0177-6
Paris R, Dondini L, Zannini G, Bastia D, Marasco E, Gualdi V, Rizzi V, Piffanelli P, Mantovani V, Tartarini S: dHPLC efficiency for semi-automated cDNA-AFLP analyses and fragment collection in the apple scab-resistance gene model. Planta 2012, 235:1065-1080. 10.1007/s00425-012-1589-y
Vanderplank JE: Horizontal and vertical resistance. In Disease Resistance in Plants. Edited by: Vanderplank JE. Orlando, Florida: Academic Press; 1984:57-81.
Lateur M: Fruit tree genetic resources and Integrated Fruit Production. Acta Hortic 2000, 525:317-323.
Bachem CWB, Oomen RJFJ, Visser RGF: Transcript imaging with cDNA-AFLP: a step-by-step protocol. Plant Mol Biol Rep 1998, 16:157-173. 10.1023/A:1007468801806
Qubbaj T, Reineke A, Zebitz CPW: Molecular interactions between rosy apple aphids, Dysaphis plantaginea , and resistant and susceptible cultivars of its primary host Malus domestica . Entomol Exp Appl 2004, 115:145-152.
Massart S, Jijakli MH: Identification of differentially expressed genes by cDNA-amplified fragment length polymorphism in the biocontrol agent Pichia anomala (Strain Kh5). Biol control 2006, 96:80-86.
Yao YX, Li M, Liu Z, Hao YJ, Zhai H: A novel gene, screened by cDNA-AFLP approach, contributes to lowering the acidity of fruit in apple. Plant Physiol Bioch 2007, 45:139-145. 10.1016/j.plaphy.2007.01.010
Aldaghi M, Bertaccini A, Lepoivre P: cDNA-AFLP analysis of gene expression changes in apple trees induced by phytoplasma infection during compatible interaction. Eur J Plant Pathol 2012, 134:117-130. 10.1007/s10658-012-9970-z
Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EHA, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ, Laing WA, McArtney S, Nain B, Ross GS, Snowden KC, Souleyre EJF, Walton EF, Yauk YK: Analyses of expressed sequence tags from apple. Plant Physiol 2006, 141:147-166. 10.1104/pp.105.076208
Gasic K, Gonzalez DO, Thimmapuram J, Liu L, Malnoy M, Gong G, Han Y, Vodkin LO, Aldwinckle HS, Carroll NJ, Orvis KS, Goldsbrough P, Clifton S, Pape D, Fulton L, Martin J, Theising B, Wisniewski ME, Fazio G, Feltus FA, Korban SS: Comparative analysis and functional annotation of a large expressed sequence tag collection of apple. Plant Gen 2009, 2:23-38. 10.3835/plantgenome2008.11.0014
The EG assembler website http://egassembler.hgc.jp/
Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S: EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res 2006, 34:459-462.
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, et al.: The genome of the domesticated apple ( Malus x domestica Borkh). Nat Genet 2010, 42:833-839. 10.1038/ng.654
Mathioudakis MM, Maliogka VI, Katsiani AT, Katis NI: Incidence and molecular variability of apple stem pitting and apple chlorotic leaf spot viruses in apple and pear orchards in Greece. J Plant Pathol 2010, 92:139-147.
Rausher MD: Co-evolution and plant resistance to natural enemies. Nature 2001, 411:857-864. 10.1038/35081193
Durrant WE, Rowland O, Piedras P, Hammond-Kosack KE, Jones JDG: cDNA-AFLP Reveals a striking overlap in race-specific resistance and wound response gene expression profiles. The Plant Cell 2000, 12:963-977. 10.1105/tpc.12.6.963
Gabriëls SHEJ, Takken FL, Vossen JH, de Jong CF, Liu Q, Turk SCHJ, Wachowski LK, Peters J, Witsenboer HMA, de Wit PJGM, Joosten MHJ: cDNA-AFLP combined with functional analysis reveals novel genes involved in the hypersensitive response. Mol Plant Microbe In 2006, 19:567-576. 10.1094/MPMI-19-0567
Wang X, Liu W, Chen X, Tang C, Dong Y, Ma J, Huang X, Wei G, Han Q, Huang L, Kang Z: Differential gene expression in incompatible interaction between wheat and stripe rust fungus revealed by cDNA-AFLP and comparison to compatible interaction. BMC Plant Biol 2010, 10:9. 10.1186/1471-2229-10-9
Shi C, Chaudhary S, Yu K, Park SJ, Navabi A, McClean PE: Identification of candidate genes associated with CBB resistance in common bean HR45 ( Phaseolus vulgaris L.) using cDNA-AFLP. Mol Biol Rep 2011, 38:75-81. 10.1007/s11033-010-0079-1
Li C, Faino L, Dong L, Fan J, Kiss L, De Giovanni C, Lebeda A, Scott J, Matsuda Y, Toyoda H, Lindhout P, Visser RGF, Bonnema G, Bai Y: Characterization of polygenic resistance to powdery mildew in tomato at cytological, biochemical and gene expression level. Mol Plant Pathol 2012, 13:148-159. 10.1111/j.1364-3703.2011.00737.x
Alignan M, Hewezi T, Petitprez M, Dechamp-Guillaume G, Gentzbittel L: A cDNA microarray approach to decipher sunflower ( Helianthus annuus ) responses to the necrotrophic fungus Phoma macdonaldii . New Phytol 2006, 170:523-536. 10.1111/j.1469-8137.2006.01696.x
Valsangiacomo C, Gessler C: Role of the cuticular membrane in ontogenic and Vf resistance of apple leaves against Venturia inaequalis . Phytopathology 1988, 78:1066-1069. 10.1094/Phyto-78-1066
Silfverberg-Dilworth E, Patocchi A, Gessler C: Evaluation of in vitro grown apple shoot sensitivity to Venturia inaequalis using a detached leaf assay. IOBC-WPRS Bulletin 2006, 29:67-74.
Clark TA, Zeyen RJ, Smith AG, Bushnell WR, Szabo LJ, Vance CP: Host response gene transcript accumulation in relation to visible cytological events during Erysiphe graminis attack in isogenic barley lines differing at the Ml-a locus. Physiol Mol Plant P 1993, 43:283-298. 10.1006/pmpp.1993.1058
Ruiz-Lozano JM, Roussel H, Gianinazzi S, Gianinazzi-Pearson V: Defense genes are differentially induced by a mycorrhizal fungus and Rhizobium sp. in wild-type and symbiosis-defective pea genotypes. Mol Plant Microbe In 1999, 12:976-984. 10.1094/MPMI.1999.12.11.976
Lo SCC, Hipskind JD, Nicholson RL: cDNA cloning of a sorghum pathogenesis-related protein (PR-10) and differential expression of defense-related genes following inoculation with Cochliobolus heterostrophus or Colletotrichum sublineolum . Mol Plant Microbe In 1999, 12:479-489. 10.1094/MPMI.1999.12.6.479
Kleemann J, Rincon-Rivera LJ, Takahara H, Neumann U, Ver Loren Van Themaat E, van der Does HC, Hacquard S, Stüber K, Will I, Schmalenbach W, Schmelzer E, O'Connell RJ: Sequential delivery of host-induced virulence effectors by appressoria and intracellular hyphae of the phytopathogen Colletotrichum higginsianum . PLOS Pathogens 2012, 8:1-15.
Chisholm S, Coaker G, Day B, Staskawicz BJ: Host-microbe interactions: shaping the evolution of the plant immune response. Cell 2006, 124:803-814. 10.1016/j.cell.2006.02.008
Dal Cin V, Barbaro E, Danesin M, Murayama H, Velasco R, Ramina A: Fruitlet abscission: a cDNA-AFLP approach to study genes differentially expressed during shedding of immature fruits reveals the involvement of a putative auxin hydrogen symporter in apple ( Malus domestica L. Borkh). Gene 2009, 442:26-36. 10.1016/j.gene.2009.04.009
Baldo A, Norelli JL, Farrell RE Jr, Bassett CL, Aldwinckle HS, Malnoy M: Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars ( Malus X domestica ) with Erwinia amylovora . BMC Plant Biol 2010, 10:1-10. 10.1186/1471-2229-10-1
Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA, Dangl JL, Dietrich RA: The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nature 2000, 26:403-410.
Katagiri F: A global view of defense gene expression regulation - a highly interconnected signaling network. Curr Opin Plant Biol 2004, 7:506-511. 10.1016/j.pbi.2004.07.013
Steiner B, Kurz H, Lemmens M, Buerstmayr H: Differential gene expression of related wheat lines with contrasting levels of head blight resistance after Fusarium graminearum inoculation. Theor Appl Genet 2008, 118:753-764.
Eckey C, Korell M, Leib K, Biedenkopf D, Janses C, Langen G, Kogel K-H: Identification of powdery mildew-induced barley genes by cDNA-AFLP: functional assessment of an early expressed MAP kinase. Plant Mol Biol 2004, 55:1-15.
Wang GL, Mackill DJ, Bonman JM, McCouch SR, Champoux MC, Nelson RJ: RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 1994, 136:1421-1434.
Gilroy EM, Hein I, van der Hoorn R, Boevink PC, Venter E, McLellan H, Kaffarnik F, Hrubikova K, Shaw J, Holeva M, Lòpez EC, Borras-Hidalgo O, Pritchard L, Loake GJ, Lacomme C, Birch PRJ: Involvement of cathepsin B in the plant disease resistance hypersensitive response. Plant J 2007, 52:1-13. 10.1111/j.1365-313X.2007.03226.x
Tao Y, Xie Z, Chen W, Glazebrook J, Chang HS, Han B, Zhu T, Zou G, Katagiri F: Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae . Plant Cell 2003, 15:317-330. 10.1105/tpc.007591
Marrs KA: The functions and regulation of glutathione-S-transferase in plants. Annu Rev Plant Physiol Plant Mol Biol 1996, 47:127-158. 10.1146/annurev.arplant.47.1.127
Bindschedler LV, Dewdney J, Blee KA, Stone JM, Asai T, Plotnikov J, Denoux C, Hayes T, Gerrish C, Davies DR, Ausubel FM, Bolwell GP: Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance. Plant J 2006, 47:851-863. 10.1111/j.1365-313X.2006.02837.x
Yang CW, Gonzalez-Lamothe R, Ewan RA, Rowland O, Yoshioka H, Shenton M, Ye H, O'Donnell E, Jones JDG, Sadanandom A: The E3 ubiquitin ligase activity of Arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense. Plant Cell 2006, 18:1084-1098. 10.1105/tpc.105.039198
Solomon M, Belenghia B, Delledonne M, Menachema E, Levine A: The involvement of cysteine proteases and protease inhibitor genes in the regulation of programmed cell death in plants. Plant Cell 1999, 11:431-443. 10.1105/tpc.11.3.431
Bolton MD: Primary metabolism and plant defense: fuel for the fire. Mol Plant-Microbe In 2009, 22:487-497. 10.1094/MPMI-22-5-0487
Rushton PJ, Somssich IE: Transcriptional control of plant genes responsive to pathogens. Curr Opin Plant Biol 1998, 1:311-315. 10.1016/1369-5266(88)80052-9
Lee J, Miura K, Bressan RA, Hasegawa PM, Yun DJ: Regulation of plant innate immunity by SUMO E3 ligase. Plant Signal Behav 2007, 2:253-254. 10.4161/psb.2.4.3867
Sattler SE, Mene-Saffrane L, Farmer EE, Krischke M, Mueller MJ, DellaPenna D: Nonenzymatic lipid peroxidation reprograms gene expression and activates defense markers in Arabidopsis tocopherol-deficient mutants. Plant Cell 2006, 18:3706-3720. 10.1105/tpc.106.044065
Avrova AO, Stewart HE, De Jong W, Heilbronn J, Lyon GD, Birch PRJ: A cysteine protease gene is expressed early in resistant potato interactions with Phytophthora infestans . Mol Plant-Microbe In 1999, 12:1114-1119. 10.1094/MPMI.1999.12.12.1114
Hao L, Hsiang T, Goodwin PH: Role of two cysteine proteinases in the susceptible response of Nicotiana benthamiana to Colletotrichum destructivum and the hypersensitive response to Pseudomonas syringae pv. tomato . Plant Sci 2006, 170:1001-1009. 10.1016/j.plantsci.2006.01.011
Xiong L, Zhu JK: Molecular and genetic aspects of plant responses to osmotic stress. Plant Cell Environ 2002, 25:131-139. 10.1046/j.1365-3040.2002.00782.x
Andaya CB, Ronald PC: A catalytically impaired mutant of the rice Xa21 receptor kinase confers partial resistance to Xanthomonas oryzae pv oryzae . Physiol Mol Plant P 2003, 62:203-208. 10.1016/S0885-5765(03)00060-2
Durel CE, Parisi L, Laurens F, Venisse JS, Jourjon MF: Does the Vf gene maintain a residual resistance to apple scab despite its breakdown by Venturia inaequalis race 6 strains. Acta Hortic 2000, 538:575-580.
Li ZK, Luo LJ, Mei HW, Paterson AH, Zhao XH, Zhong DB, Wang YP, Yu XQ, Zhu L, Tabien R, Stansel JW, Ying CS: A "defeated" rice resistance gene acts as a QTL against a virulent strain of Xanthomonas oryzae pv. oryzae . Mol Genet Genomics 1999, 261:58-63. 10.1007/s004380050941
Brodny U, Nelson RR, Gregory LV: Residual and interactive expression of "defeated" wheat stem rust resistance genes. Phytopathology 1986, 76:546-549. 10.1094/Phyto-76-546
Nass HA, Pedersen WL, MacKenzie DR, Nelson RR: The residual effect of some defeated powdery mildew Erysiphe graminis f.sp. tritici resistance genes in isolines of winter wheat. Phytopathology 1981, 71:1315-1348.
Talukder ZI, Tharreau D, Price AH: Quantitative trait loci analysis suggests that partial resistance to rice blast is mostly determined by race-specific interactions. New Phytol 2004, 162:197-209. 10.1111/j.1469-8137.2004.01010.x
Perchepied L, Dogimont C, Pitrat M: Strain-specific and recessive QTLs involved in the control of partial resistance to Fusarium oxysporum f. sp. melonis race 1.2 in a recombinant inbred line population of melon. Theor and Appl Genet 2005, 111:65-74. 10.1007/s00122-005-1991-y
Gebhardt C, Valkonen JPT: Organization of genes controlling disease resistance in the potato genome. Annu Rev Phytopathol 2001, 39:79-102. 10.1146/annurev.phyto.39.1.79
Calenge F, Van der Linden CG, Van de Weg E, Schouten HJ, Van Arkel G, Denancé C, Durel CE: Resistance gene analogues identified through the NBS-profiling method map close to major genes and QTL for disease resistance in apple. Theor Appl Genet 2005, 110:660-668. 10.1007/s00122-004-1891-6
Xiao W, Zhao J, Fan S, Li L, Dai J, Xu M: Mapping of genome-wide resistance gene analogs (RGAs) in maize ( Zea mays l.). Theor App Genet 2007, 115:501-508. 10.1007/s00122-007-0583-4
Wang Z, Taramino G, Yang D, Liu G, Tingey SV, Miao GH, Wang GL: Rice ESTs with disease-resistance gene-or defense-response gene-like sequences mapped to regions containing major resistance genes or QTLs. Mol Genet Genomics 2001, 265:302-310. 10.1007/s004380000415
Chu Z, Ouyang Y, Zhang J, Yang H, Wang S: Genome-wide analysis of defense-responsive genes in bacterial blight resistance of rice mediated by the recessive R gene xa13. Mol Genet Genomics 2004, 271:111-120. 10.1007/s00438-003-0964-6
Shi C, Ingvardsen C, Thümmler F, Melchinger AE, Wenzel G, Lübberstedt T: Identification by suppression subtractive hybridization of genes that are differentially expressed between near-isogenic maize lines in association with sugarcane mosaic virus resistance. Mol Genet Genomics 2005, 273:450-461. 10.1007/s00438-004-1103-8
Jensen PJ, Fazio G, Altman N, Praul C, McNellis TW: Mapping in an apple ( Malus x domestica ) F1 segregating population based on physical clustering of differentially expressed genes. BMC Genomics 2014, 15:261. 10.1186/1471-2164-15-261
Perazzolli M, Malacarne G, Baldo A, Righetti L, Bailey A, Fontana P, Velasco R, Malnoy M: Characterization of resistance gene analogues (RGAs) in apple (Malus x domestica Borkh.) and their evolutionary history of the Rosaceae family. PLoS One 2014, 9:e83844. 10.1371/journal.pone.0083844
Gilad Y, Rifkin SA, Pritchard JK: Revealing the architecture of gene regulation: the promise of eQTL studies. Trends Genet 2008, 24:408-415. 10.1016/j.tig.2008.06.001
Laurens F, Chevalier M, Dolega E, Gennari F, Goerre M, Fischer C, Kellerhals M, Lateur M, Lefrancq B, Parisi L, Schouten HJ, Tartarini S: Local European cultivars as sources of durable scab resistance in apple. Acta Hort 2004, 663:115-122.
Preece TF: A staining method for the study of apple scab infections. Plant Pathol 1959, 8:127-129. 10.1111/j.1365-3059.1959.tb00898.x
Rombauts S, van de Peer Y, Rouzé P: AFLPinSilico, simulating AFLP fingerprints. Bioinformatics 2003, 19:776-777. 10.1093/bioinformatics/btg090
Gasic K, Hernandez A, Korban SS: RNA extraction from different apple tissues rich in polyphenols and polysaccharides for cDNA library construction. Plant Mol Biol Rep 2004, 22:437a-437g. 10.1007/BF02772687
Conesa A, Götz S, Garcia-Gomez JM, Terol J, Talon M, Robles M: Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610
Rozen S, Skaletsky HJ: Primer3 on the www for general users and for biologist programmers. In Bioinformatics Methods and Protocols: Methods in Molecular Biology. Edited by: Krawetz S, Misener S. Totowa, New Jersey: Humana Press; 2000:365-386.
Gadiou S, Kundu JK: Evaluation of reference genes for the relative quantification of apple stem grooving virus and apple mosaic virus in apple trees. Indian J Virol 2012, 23:39-41. 10.1007/s13337-012-0065-4
Genome Database for Rosaceae http://www.rosaceae.org/
HIDRAS (High-quality Disease Resistant Apples for Sustainable Agriculture) website: http://www.hidras.unimi.it/HiDRAS-SSRdb/pages/index.php