Kögel-Knabner I (2002) The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biol Biochem 34: 139-162.
Baldrian P, Lindahl B (2011) Decomposition in forest ecosystems: after decades of research still novel findings. Fungal Ecol 4: 359-361.
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, et al. (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336: 1715-1719.
Lundell TK, Mäkelä MR, Hildén K (2010) Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review. J Basic Microbiol 50: 5-20.
Morgenstern I, Klopman S, Hibbett DS (2008) Molecular evolution and diversity of lignin degrading heme peroxidases in the agaricomycetes. J Mol Evol 66: 243-257.
Hofrichter M, Ullrich R, Pecyna MJ, Liers C, Lundell T (2010) New and classic families of secreted fungal heme peroxidases. Appl Microbiol Biotechnol 87:871-897.
Liers C, Bobeth C, Pecyna M, Ullrich R, Hofrichter M (2010) DyP-like peroxidases of the jelly fungus Auricularia auricula-judae oxidize nonphenolic lignin model compounds and high-redox potential dyes. Appl Microbiol Biotechnol 85: 1869-1879.
Hofrichter M, Ullrich R (2010) New trends in fungal biooxidation. In: Hofrichter M, Esser K (eds.) MYCOTA X - Industrial Applications, 2nd edition, Springer, Heidelberg, pp. 425-449.
Baldrian P (2006) Fungal laccases: occurrence and properties. FEMS Microbiol Rev 30: 215-242.
Harvey PJ, Floris R, Lundell T, Palmer JM, Schoemaker HE, et al. (1992) Catalytic mechanisms and regulation of lignin peroxidase. Biochem Soc Trans 20: 345-349.
Wunderwald U, Kreisel G, Braun M, Schulz M, Jäger C, et al. (2000) Formation and degradation of a synthetic humic acid derived from 3-fluorocatechol. Appl Microbiol Biotechnol 53: 441-446. (Pubitemid 30236118)
Jee SH, Kim YJ, Ko SO (2010) Transformation of dissolved organic matter by oxidative polymerization with horseradish peroxidase. Water Sci Technol 62: 340-346.
Criquet S, Farnet AM, Tagger S, Le Petit J (2000) Annual variations of phenoloxidase activities in an evergreen oak litter: Influence of certain biotic and abiotic factors. Soil Biol Biochem 32:1505-1513.
Kellner H, Zak DR, Vandenbol M (2010) Fungi Unearthed: Detection of Expressed Lignocellulolytic and Chitinolytic Enzymes in Forest Soil. PLoS ONE 5(6): e10971.
Edwards IP, Zak DR, Kellner H, Eisenlord SD, Pregitzer KS (2011) Simulated Atmospheric N Deposition Alters Fungal Community Composition and Suppresses Ligninolytic Gene Expression in a Northern Hardwood Forest. PLoS ONE 6(6): e20421.
Bödeker ITM, Nygren CMR, Taylor AFS, Olson A, Lindahl BD (2009) ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi. ISME J 3:1387-1395.
Baldrian P (2009) Ectomycorrhizal fungi and their enzymes in soils: is there enough evidence for their role as facultative soil saprotrophs? Oecologia 161: 657-660.
Cullings K, Courty P-E (2009) Saprotrophic capabilities as functional traits to study functional diversity and resilience of ectomycorrhizal community. Oecologia 161: 661-664.
Luis P, Kellner H, Martin F, Buscot F (2005) A molecular method to evaluate basidiomycete laccase gene expression in forest soils. Geoderma 128: 18-27. (Pubitemid 40968264)
Maijala P, Harrington TC, Raudaskoski M (2003) A peroxidase gene family and gene trees in Heterobasidion and related genera. Mycologia 95: 209-221. (Pubitemid 36557820)
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
Koua D, Cerutti L, Falquet L, Sigrist CJ, Theiler G, et al. (2009) PeroxiBase: a database with new tools for peroxidase family classification. Nucleic Acids Res D261-6.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
Steffen KT, Hofrichter M, Hatakka A (2000) Mineralisation of 14C-labelled synthetic lignin and ligninolytic enzyme activities of litter-decomposing basidiomycetous fungi. Appl Microbiol Biotechnol 54: 819-825. (Pubitemid 32009744)
Ullrich R, Nüske J, Scheibner K, Hofrichter M (2004) A novel haloperoxidase from the agaric basidiomycete Agrocybe aegerita oxidizes aryl alcohols and aldehydes. Appl Environ Microbiol 70: 4575-4581. (Pubitemid 39095478)
Liers C, Arnstadt T, Ullrich R, Hofrichter M (2011) Patterns of lignin degradation and oxidative enzyme secretion by different wood- and litter-colonizing basidiomycetes and ascomycetes grown on beech wood. FEMS Microbiol Ecol 78: 91-102.
Wariishi H, Dunford HB, MacDonald ID, Gold MH (1989) Manganese peroxidase from the lignin-degrading basidiomycete Phanerochaete chrysosporium. Transient state kinetics and reaction mechanism. J Biol Chem 264: 3335-3340.
Pecyna MJ, Ullrich R, Bittner B, Clemens A, Scheibner K, et al. (2009) Molecular characterization of aromatic peroxygenase from Agrocybe aegerita. Appl Microbiol Biotechnol 84: 885-897.
Yoshida T, Tsuge H, Konno H, Hisabori T, Sugano Y (2011) The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue. FEBS J 278: 2387-2394.
Kästner M, Hofrichter M (2001) Biodegradation of humic substances. In: Hofrichter M, Steinbüchel A (eds.) Biopolymers. Vol. 1 - Lignin, Humic Substances and Coal. Wiley-VCH, Weinheim, pp. 349-378.
Sinsabaugh RL (2010) Phenol oxidase, peroxidase and organic matter dynamics of soil. Soil Biol Biochem 42: 391-404.
Eichlerová I, Šnajdr J, Baldrian P (2012) Laccase activity in soils: considerations for the measurement of enzyme activity. Chemosphere 88:1154-1160.
Hofrichter M, Fritsche W (1997) Depolymerization of low-rank coal by extracellular fungal enzyme systems. III. In vitro depolymerization of coal humic acids by a crude preparation of manganese peroxidase from the white-rot fungus Nematoloma frowardii b19. Appl Microbiol Biotechnol 47: 566-571. (Pubitemid 27272564)
Valášková V, Šnajdr J, Bittner B, Cajthaml T, Merhautová V, et al. (2007) Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest. Soil Biol Biochem 39: 2651-2660. (Pubitemid 47082450)
Steffen KT, Cajthaml T, Snajdr J, Baldrian P (2007) Differential degradation of oak (Quercus petraea) leaf litter by litter-decomposing basidiomycetes. Res Microbiol 158: 447-455. (Pubitemid 46881225)
Snajdr J, Cajthaml T, Valášková V, Merhautová V, Petránková M, et al. (2011) Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition. FEMS Microbiol Ecol 75: 291-303.
Steffen KT, Hatakka A, Hofrichter M (2002) Degradation of humic acids by the litter-decomposing basidiomycete Collybia dryophila. Appl Environ Microbiol 68:3442-3448. (Pubitemid 34734043)
Kellner H, Luis P, Schlitt B, Buscot F (2009) Temporal changes in diversity and expression patterns of fungal laccase genes within the organic horizon of a brown forest soil. Soil Biol Biochem 41: 1380-1389.
Ghosh A, Frankland JC, Thurston CF, Robinson CH (2003) Enzyme production by Mycena galopus mycelium in artificial media and in Picea sitchensis F1 horizon needle litter. Mycol Res 8: 996-1008. (Pubitemid 37212010)
Torres E, Ayala M (2010) Biocatalysis based on heme peroxidases - Peroxidases as potential industrial biocatalysts. Springer, Heidelberg, Germany, p 358.
Zámocký M, Obinger C (2010) Molecular phylogeny of heme peroxidases. In: Torres E, Ayala M (2010) Biocatalysis based on heme peroxidases - Peroxidases as potential industrial biocatalysts. pp 7-35.
Robert C, Wilson CS, Guengerich FP, Arreto CD (2010) Evolution of the scientific literature of cytochrome P450 from 1977 to 2008. Curr Drug Metab 11: 162-170.
Gröbe G, Ullrich R, Pecyna MJ, Kapturska D, Friedrich F, et al. (2011) High-yield production of aromatic peroxygenase by the agaric fungus Marasmius rotula. AMB Express 1: 31(1-11).
Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, et al. (2012) Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proc Natl Acad Sci USA 109: 17501-17506.
Weber CF, Zak DR, Hungate BA, Jackson RB, Vilgalys R, et al. (2011) Responses of soil cellulolytic fungal communities to elevated atmospheric CO2 are complex and variable across five ecosystems. Environ Microbiol 13: 2778-2793.
DeForest JL, Zak DR, Pregitzer KS, Burton AJ (2004) Atmospheric nitrate deposition, microbial community composition, and enzyme activity in northern hardwood forests. Soil Sci Soc Am J 68: 132-138. (Pubitemid 38086460)
DeForest JL, Zak DR, Pregitzer KS, Burton AJ (2005) Atmospheric nitrate deposition and enhanced dissolved organic carbon leaching: Test of a potential mechanism. Soil Sci Soc Am J 69: 1233-1237. (Pubitemid 41033678)
Hofrichter M (2002) Review: Lignin conversion by manganese peroxidase (MnP). Enzyme Microb Technol 30: 454-466.
Fritsche W, Hofrichter M (2004) Aerobic degradation of recalcitrant organic compounds by microorganisms. In: Jördening H-J, Winter J (eds.) Environmental Biotechnology, Wiley-VCH, pp. 203-227.
Kapich AN, Steffen KT, Hofrichter M, Hatakka A (2005) Involvement of lipid peroxidation in the degradation of a non-phenolic lignin model compound by manganese peroxidase of the litter-decomposing fungus Stropharia coronilla. Biochem Biophys Res Commun 330: 371-377. (Pubitemid 40417656)
Hofrichter M, Liers C, Kinne M, Ullrich R (2009) Abbau und Transformation von Lignin und Huminstoffen durch Pilze. Rundgespräche der Kommission für Ökologie, Bd. 37 »Ökologische Rolle von Pilzen«, Munich, pp. 81-94.
Dickson RE, Lewin KF, Isebrands JG, Coleman MD, Heilman WE, et al. (2000) General Technical Report NC-214. USDA Forest Service North Central Experiment Station.
Larson JL, Zak DR, Sinsabaugh RL (2002) Extracellular enzyme activity beneath temperate trees growing under elevated carbon dioxide and ozone. Soil Sci Soc Am J 66: 1848-1856. (Pubitemid 35352891)
Laitat E, Chermanne B, Portier B (1999) Biomass, carbon and nitrogen allocation in open top chambers under ambient and elevated CO2 and in a mixed forest stand. A tentative approach for scaling up from the experiments of Vielsalm. In: Forest Ecosystem Modelling, Upscaling and Remote Sensing. Eds. R. Ceulemans, F. Veroustraete, V. Gond and J. Van Rensbergen. pp 33-60. SPB Academic Publishing bv., The Hague, The Netherlands.
Ranger J, Gelhaye D (2006) Effet de l'essence forestière sur le fonctionnement biogéochimique et biologique d'un écosystème forestier. Présentation du site experimental de la forêt de Breuil-Chenue. INRA Biogéochimie des Ecosystèmes Forestiers, France, p 51.
Kaiser K, Eusterhues K, Rumpel C, Guggenberger G, Kögel-Knabner I (2002) Stabilization of organic matter by soil minerals - investigations of density and particle-size fractions from two acid forest soils. J Plant Nutr Soil Sci 165: 451-459. (Pubitemid 37240564)
Fischer M, Bossdorf O, Gockel S, Hänsel F, Hemp A, et al. (2010) Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories. Basic Appl Ecol 11: 473-485.
Allard V, Ourcival JM, Rambal S, Joffre R, Rocheteau A (2008) Seasonal and annual variation of carbon exchange in an evergreen Mediterranean forest in southern France. Glob Chang Biol 14: 714-725. (Pubitemid 351425919)
