Development of the simultaneous detection of Ralstonia solanacearum race 3 and clavibacter michiganensis subsp. Sepedonicus in potato tubers by a multiplex real-time PCR assay
Massart, Sébastien; Nagy, Catherine; Jijakli, Haissam
2014 • In European Journal of Plant Pathology, 138, p. 29-37
Development of the simultaneous detection of Ralstonia solanacearum race 3 and clavibacter michiganensis subsp. Sepedonicus in potato tubers by a multiplex real-time PCR assay
Abu Al-Soud, W., & Rådström, P. (1998). Capacity of nine thermostable DNA polymerases to mediate DNA amplification in the presence of PCR-inhibiting samples. Applied and Environmental Microbiology, 64(10), 3748-3753.
Arulappan, F. X., van Beuningen, A. R., Derks, J. H. J., Wullings, B., Tjou-Tam-Sin, N. N. A., & Janse, J. D. (1996). Comparison of the indirect and direct immunofluorescence test for the detection of latent brown rot infection, with a new antiserum. Annual report of the Plantenziekten-kundige dienst, Diagnostic center (pp. 6). Wageningen, The Netherlands.
Bach, H. J., Jessen, I., Schloter, M., & Munch, J. C. (2003). A TaqMan-PCR protocol for quantification and differentiation of the phytopathogenic Clavibacter michiganensis subspecies. Journal of Microbiological Methods, 52(1), 85-91. doi: 10. 1016/S0167-7012(02)00152-5.
Baric, S., & Dalla-Via, J. (2004). A new approach to apple proliferation detection: a highly sensitive real-time PCR assay. Journal of Microbiological Methods, 57(1), 135-145.
Boivin, G., Côté, S., Déry, P., De Serres, G., & Bergeron, M. G. (2004). Multiplex real-time PCR assay for detection of influenza and human respiratory syncytial viruses. Journal of Clinical Microbiology, 42(1), 45-51.
Ciampi, L., Sequeira, L., & French, E. R. (1981). Pseudomonas solanacearum. Distribution in potato plants and the establishment of latent infections. In C. Lozano (Ed.), Proceedings of the 5th International Conference on Plant Pathogenic Bacteria (pp. 148-161). Cali, Colombia: Centro Internacional de Agricultura Tropical.
Elphinstone, J. G., Hennessy, J., Wilson, J. K., & Stead, D. E. (1996). Sensitivity of different methods for the detection of Ralstonia solanacearum in potato tuber extracts. EPPO Bulletin, 26, 15.
Fernández-Pinero, J., Gallardo, C., Elizalde, M., Robles, A., Gómez, C., Bishop, R., & Arias, M. (2013). Molecular diagnosis of African swine fever by a new real-time PCR using universal probe library. Transboundary and Emerging Diseases, 60(1), 48-58.
Fucikovsky, L., & Duveiller, E. (1997). Other plant pathogenic bacteria reported on wheat. In E. Duveiller, L. Fucikovsky, & K. Rudolph (Eds.), The bacterial diseases of wheat. Concept and methods of disease management (pp. 59-64). Mexico: CIMMYT.
Hoorfar, J., Cook, N., Malorny, B., Wagner, M., De Medici, D., Abdulmawjood, A., & Fach, P. (2003). Making internal amplification control mandatory for diagnostic PCR [2]. Journal of Clinical Microbiology, 41(12), 5835.
James, D., Varga, A., Pallas, V., & Candresse, T. (2006). Strategies for simultaneous detection of multiple plant viruses. Canadian Journal of Plant Pathology, 28(1), 16-29.
Li, W., Teixeira, D. C., Hartung, J. S., Huang, Q., Duan, Y., Zhou, L., & Levy, L. (2013). Development and systematic validation of qPCR assays for rapid and reliable differentiation of Xylella fastidiosa strains causing citrus variegated chlorosis. Journal of Microbiological Methods, 92(1), 79-89.
Mackay, I. M. (2004). Real-time PCR in the microbiology laboratory. Clinical Microbiology and Infection, 10(3), 190-212. doi: 10. 1111/j. 1198-743X. 2004. 00722. x.
Malorny, B., Paccassoni, E., Fach, P., Bunge, C., Martin, A., & Helmuth, R. (2004). Diagnostic real-time PCR for detection of Salmonella in food. Applied and Environmental Microbiology, 70(12), 7046-7052.
Massart, S., De Clercq, D., Salmon, M., Dickburt, C., & Jijakli, M. H. (2005). Development of real-time PCR using Minor Groove Binding probe to monitor the biological control agent Candida oleophila (strain O). Journal of Microbiological Methods, 60(1), 73-82.
Massart, S., Brostaux, Y., Barbarossa, L., César, V., Cieslinska, M., Dutrecq, O., & Jijakli, M. H. (2008). Inter-laboratory evaluation of a duplex RT-PCR method using crude extracts for the simultaneous detection of Prune dwarf virus and Prunus necrotic ringspot virus. European Journal of Plant Pathology, 122(4), 539-547.
Mumford, R., Boonham, N., Tomlinson, J., & Barker, I. (2006). Advances in molecular phytodiagnostics-new solutions for old problems. European Journal of Plant Pathology, 116(1), 1-19.
Ozakman, M., & Schaad, N. W. (2003). A real-time BIO-PCR assay for detection of Ralstonia solanacearum race 3, biovar 2, in asymptomatic potato tubers. Canadian Journal of Plant Pathology, 25(3), 232-239. doi: 10. 1080/07060660309507075.
Pastrik, K. H. (2000). Detection of Clavibacter michiganensis subsp. sepedonicus in potato tubers by multiplex PCR with coamplification of host DNA. European Journal of Plant Pathology, 106(2), 155-165. doi: 10. 1023/A: 1008736017029.
Pastrik, K. H., & Maiss, E. (2000). Detection of Ralstonia solanacearum in potato tubers by polymerase chain reaction. Journal of Phytopathology, 148(11-12), 619-626.
Pastrik, K. H., Elphinstone, J. G., & Pukall, R. (2002). Sequence analysis and detection of Ralstonia solanacearum by multiplex PCR amplification of 16S-23S ribosomal intergenic spacer region with internal positive control. European Journal of plant pathology/European Foundation for Plant Pathology, 108(9), 831-842.
Schaad, N. W., Berthier-Schaad, Y., Sechler, A., & Knorr, D. (1999). Detection of Clavibacter michiganensis subsp. sepedonicus in potato tubers by BIO-PCR and an automated real-time fluorescence detection system. Plant Disease, 83(12), 1095-1100.
Seal, S., Taghavi, M., Fegan, N., Hayward, A. C., & Fegan, M. (1999). Determination of Ralstonia (Pseudomonas) solanacearum rDNA subgroups by PCR tests. Plant Pathology, 48, 115-120. doi: 10. 1046/j. 1365-3059. 1999. 00322. x.
van Brunschot, S. L., Gambley, C. F., De Barro, P. J., Grams, R., Thomas, J. E., Henderson, J., et al. (2013). Panel of real-time PCRs for the multiplexed detection of two tomato-infecting begomoviruses and their cognate whitefly vector species. Plant Pathology.
van Hoeyveld, E., Houtmeyers, F., Massonet, C., Moens, L., van Ranst, M., Blanckaert, N., & Bossuyt, X. (2004). Detection of single nucleotide polymorphisms in the mannose-binding lectin gene using minor groove binder-DNA probes. Journal of Immunological Methods, 287(1-2), 227-230.
Weller, S. A., Elphinstone, J. G., Smith, N. C., Boonham, N., & Stead, D. E. (2000). Detection of Ralstonia solanacearum strains with a quantitative, multiplex, real-time, fluorogenic PCR (TaqMan) assay. Applied and Environmental Microbiology, 66(7), 2853-2858. doi: 10. 1128/aem. 66. 7. 2853-2858. 2000.
Yao, Y., Nellåker, C., & Karlsson, H. (2006). Evaluation of minor groove binding probe and TaqMan probe PCR assays: influence of mismatches and template complexity on quantification. Molecular and Cellular Probes, 20(5), 311-316.
Zielke, R., & Naumann, K. (1984). Untersuchungen zur Erfassung des latenten Befallsstadiums von Corynebacterium sepedonicum (Spieck. et Kotth.) Skapt. et Burkh. im Kartoffelgewebe. Zentralblatt für Mikrobiologie, 139(4), 267-280.
