Identification of surf actin producing strains in Soumbala and Bikalga fermented condiments using polymerase chain reaction and matrix assisted laser desorption/ionization-mass spectrometry methods
Savadogo, A; Tapi, Arthur; Chollet, Marlèneet al.
2011 • In International Journal of Food Microbiology
Identification of surf actin producing strains in Soumbala and Bikalga fermented condiments using polymerase chain reaction and matrix assisted laser desorption/ionization-mass spectrometry methods
Azokpota P., Hounhouigan D.J., Nago M.C. Microbiological and chemical changes during the fermentation of African locust bean (Parkia biglobosa) to produce afitin, iru and sonru, three traditional condiments produced in Benin. International Journal of Food Microbiology 2006, 107:304-309.
Beaumont M. Flavouring composition prepared by fermentation with Bacillus spp. International Journal of Food Microbiology 2002, 75:189-196.
Biemann K. Sequencing of peptides by tandem mass spectrometry and high-energy collision-induced dissociation. Methods in Enzymology 1990, 193:455-479.
Chang Y.H., Shangkuan Y.H., Lin H.C., Liu H.W. PCR assay of the groEL gene for detection and differentiation of Bacillus cereus group cells. Applied and Environmental Microbiology 2003, 69:4502-4510.
Cho S.J., Oh S.H., Pridmore R.D., Juillerat M.A., Lee C.H. Purification and characterization of proteases from Bacillus amyloliquefaciens isolated from traditional soybean fermentation starter. Journal of Agricultural and Food Chemistry 2003, 51:7664-7670.
Coutte F., Leclère V., Bechet M., Guez J.S., Lecouturier D., Chollet-Imbert M., Dhulster P., Jacques P. Effect of pps disruption and constitutive expression of srfA on surfactin productivity, spreading and antagonistic properties of Bacillus subtilis 168 derivatives. Journal of Applied Microbiology 2010, 109:480-491.
Coutte F., Lecouturier D., Yahia S.A., Leclère V., Bechet M., Jacques P., Dhulster P. Production of surfactin and fengycin by Bacillus subtilis in a bubbleless membrane bioreactor. Applied Microbiology and Biotechnology 2010, 87:499-507.
Dakwa S., Sakyi-Dawson E., Diako C., Annan N.T., Amoa-Awua W.K. Effect on the fermentation of soybeans into dawadawa (soydawadawa). International Journal of Food Microbiology 2005, 104:69-82.
Debois D., Hamze K., Guérineau V., Le Caër J.-P., Holland I.B., Lopes P., Ouazzani J., Séror S.J., Brunelle A., Laprévote O. In situ localisation and quantification of surfactins in a Bacillus subtilis swarming community by imaging mass spectrometry. Proteomics 2008, 8:3682-3691.
Duitman E.H., Hamoen L.W., Rembold M., Venema G., Seitz H., Saenger W., Bernhard F., Reinhardt R., Schmidt M., Ullrich C., Stein T., Leenders F., Vater J. The mycosubtilin synthetase of Bacillus subtilis ATCC6633: a multifunctional hybrid between a peptide synthetase, an amino transferase, and a fatty acid synthase. Proceedings of the National Academy of Sciences of the United States of America 1999, 96:13294-13299.
Duitman E.H., Dobek W., Boven L.G., Venema G., Kuipers O.P., Hamoen L.W. Novel methods for genetic transformation of natural Bacillus subtilis isolates used to study the regulation of the mycosubtilin and surfactin synthetases. Applied and Environmental Microbiology 2007, 73:3490-3496.
Galli G., Rodriguez F., Cosmina P., Pratesi C., Nogarotto R., de Ferra F., Grandi G. Characterization of the surfactin synthetase multi-enzyme complex. Biochimica et Biophysica Acta 1994, 1205:19-28.
Grangemard I., Wallach J., Peypoux F. Evidence of surfactin hydrolysis by a bacterial endoprotease. Biotechnology Letters 1999, 21:241-244.
Hathout Y., Ho Y.P., Ryzhov V., Demirev P., Fenselau C. Kurstakins: a new class of lipopeptides isolated from Bacillus thuringiensis. Journal of Natural Products 2000, 63:1492-1496.
Huang X., Wang Y., Cui Y., Hua X. Optimization of antifungal effect of surfactin and iturin to Penicillium notatum in syrup of peach by RSM. International Journal of Peptide Research and Therapeutics 2010, 16:63-69.
Hue N., Serani L., Laprévote O. Structural investigation of cyclic peptidolipids from Bacillus subtilis by high-energy tandem mass spectrometry. Rapid Communications in Mass Spectrometry 2001, 15:203-209.
Jeyaram K., Mohendro Singh W., Premarani T., Ranjita Devi A., Selina Chanu K., Talukdar N.C., Rohinikumar Sing M. Molecular identification of dominant microflora associated with Hawaijar - a traditional fermented soybean (Glycine max (L.)) food of Manipur, India. International Journal of Food Microbiology 2008, 122:259-268.
Jung J.H., Chang H.C. Antifungal activity of Bacillus polyfermenticus CJ6 isolated from Meju. Journal of the Korean Society of Food Science and Nutrition 2009, 38:509-516.
Kim W., Choi K., Kim Y., Park H., Choi J., Lee Y., Oh H., Kwon I., Lee S. Purification and characterization of fibrinolytic enzyme produced from Bacillus sp strain CK 11-4 screened from Chungkook-Jang. Applied and Environmental Microbiology 1996, 62:2482-2488.
Konz D., Doekel S., Marahiel M.A. Molecular and biochemical characterization of the protein template controlling biosynthesis of the lipopeptide lichenysin. Journal of Bacteriology 1999, 181:133-140.
Koumoutsi A., Chen X.H., Henne A., Liesegang H., Hitzeroth G., Franke P., Vater J., Borriss R. Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42. Journal of Bacteriology 2004, 186:1084-1096.
Kwon G.H., Lee H.A., Park J.Y., Kim J.S., Lim J., Park C.S., Kwon D.Y., Kim Y.S., Kim J.H. Development of a RAPD-PCR method for identification of Bacillus species isolated from Cheonggukjang. International Journal of Food Microbiology 2009, 129:282-287.
Lambalot R.H., Gehring A.M., Flugel R.S., Zuber P., LaCelle M., Marahiel M.A., Reid R., Khosla C., Walsh C.T. A new enzyme superfamily-the phosphopantetheinyl transferases. Chemistry and Biology 1996, 3:923-936.
Madonna A.J., Voorhees K.J., Taranenko N.I., Laiko V.V., Doroshenko V.M. Detection of cyclic lipopeptide biomarkers from Bacillus species using atmospheric pressure Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry. Analytical Chemistry 2003, 75:1628-1637.
Marahiel M.A., Essen L.O. Nonribosomal peptide synthetases mechanistic and structural aspects of essential domains. Methods in Enzymology 2009, 458:337-351. Chapter 13.
Marahiel M.A., Stachelhaus T., Mootz H.D. Modular peptide synthetases involved in nonribosomal peptide synthesis. Chemical Reviews 1997, 97:2651-2674.
McCarron P.A., Donnelly R.F., Marouf W., Calvert D.E. Anti-adherent and antifungal activities of surfactant-coated poly(ethylcyanoacrylate) nanoparticles. International Journal of Pharmaceutics 2007, 340:182-190.
Menkhaus M., Ullrich C., Kluge B., Vater J., Vollenbroich D., Kamp R.M. Structural and functional organization of the surfactin synthetase multienzyme system. Journal of Biological Chemistry 1993, 268:7678-7684.
Mo A.Y., Kwon B., Kamala-Kannan S., Lee K.J., Oh B.T., Kim D.H., Yang M.S., Kim J.H., Park S.M. Isolation and characterization of Bacillus polyfermenticus isolated from Meju, Korean soybean fermentation starter. World Journal of Microbiology and Biotechnology 2010, 26:1099-1105.
Mohamadou B.A., Mbofung C.M.F., Thouvenot D. Functional potential of a product from traditional biotechnology: antioxidant and probiotic potential of Mbuja, produced by fermentation of Hibiscus sabdariffa seeds in Cameroon. Journal of Food Technology 2007, 5:164-168.
Nagórska K., Bikowski M., Obuchowski M. Multicellular behaviour and production of a wide variety of toxic substances support usage of Bacillus subtilis as a powerful biocontrol agent. Acta Biochimica Polonica 2007, 54:495-508.
Nakano M.M., Magnuson R., Myers A., Curry J., Grossman A.D., Zuber P. srfA is an operon required for surfactin production, competence development, and efficient sporulation in Bacillus subtilis. Journal of Bacteriology 1991, 173:1770-1778.
N'Dir B., Hbid C., Cornelius C., Roblain D., Jacques P., Vanhentenryck F., Diop M., Thonart P. Propriétés antifongiques de la microflore sporulée du nététu. Cahiers Agricultures 1994, 3:23-30.
Odunfa S.A. Microorganisms associated with fermentation of African locust bean (Parkia filicoidea) during iru preparation. Journal of Plant Foods 1981, 3:245-250.
Oguntoyinbo F.A., Huch M., Cho G.S., Schillinger U., Holzapfel W.H., Sanni A.I., Franz C.M. Diversity of Bacillus species isolated from Okpehe, a traditional fermented soup condiment from Nigeria. Journal of Food Protection 2010, 73:870-878.
Ongena M., Jacques P. Bacillus lipopeptides: versatile weapons for plant disease biocontrol. Trends in Microbiology 2008, 16:116-125.
Ouoba L.I.I., Rechinger K.B., Diawara B., Traore' A.S., Jakobsen M. Degradation of proteins during the fermentation of African locust bean (Parkia biglobosa) by strains of Bacillus subtilis and Bacillus pumilus for production of Soumbala. Journal of Applied Microbiology 2003, 94:396-402.
Ouoba L.I.I., Diawara B., Jespersen L., Jakobsen M. Antimicrobial activity of Bacillus subtilis and Bacillus pumilus during the fermentation of African locust bean (Parkia biglobosa) for Soumbala production. Journal of Applied Microbiology 2007, 102:963-970.
Ouoba L.I.I., Parkouda C., Diawara B., Scotti C., Varnam A.H. Identification of Bacillus spp from Bikalga, fermented seeds of Hibiscus sabdariffa: phenotypic and genotypic characterization. Journal of Applied Microbiology 2008, 104:122-131.
Ouoba L.I.I., Thorsen L., Varnam A.H. Enterotoxins and emetic toxins production by Bacillus cereus and other species of Bacillus isolated from Soumbala and Bikalga, African alkaline fermented food condiments. International Journal of Food Microbiology 2008, 124:224-230.
Parkouda C., Diawara B., Ouoba L.I.I. Technology and physico-chemical characteristics of Bikalga, alkaline fermented seeds of Hibiscus sabdariffa. African Journal of Biotechnology 2008, 7:916-922.
Price N.P.J., Rooney A.P., Swezey J.L., Perry E., Cohan F.M. Mass spectrometric analysis of lipopeptides from Bacillus strains isolated from diverse geographical locations. FEMS Microbiology Letters 2007, 271:83-89.
Razafindralambo H., Popineau Y., Deleu M., Hbid C., Jacques P., Thonart P., Paquot M. Surface-active properties of surfactin/IturinA mixtures produced by Bacillus subtilis. Langmuir 1997, 13:6026-6031.
Roepstorff P., Fohlman J. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomedical Mass Spectrometry 1984, 11:601.
Rupf S., Merte K., Eschrich K. Quantification of bacteria in oral samples by competitive polymerase chain reaction. Journal of Dental Research 1999, 78:850-856.
Seo H.-R., Kim J.-Y., Kim J.-H., Park K.-Y. Identification of Bacillus cereus in a Chungkukjang that showed high anticancer effects against AGS human gastric adenocarcinoma cells. Journal of Medicinal Food 2009, 31:1274-1280.
Sivapathasekaran C., Mukherjee S., Samanta R., Ramkrishna S. High-performance liquid chromatography purification of biosurfactant isoforms produced by a marine bacterium. Analytical and Bioanalytical Chemistry 2009, 395:845-854.
Sivapathasekaran C., Mukherjee S., Ramkrishna S. Matrix Assisted Laser Desorption Ionization-Time of Flight mass spectral analysis of marine lipopeptides with potential therapeutic implications. International Journal of Peptide Research and Therapeutics 2010, 16:79-85.
Sopade P.A., Ajisegiri E.S., Abass A.B. Moisture sorption isotherms of dawadawa, a fermented African locust bean (Parkia biglobosa Jacq. Benth). Food Control 1996, 7:153-156.
Stein T. Bacillus subtilis antibiotics: structures, syntheses and specific functions. Molecular Microbiology 2005, 56:845-857.
Sun H., Bie X., Lu F., Lu Y., Wu Y., Lu Z. Enhancement of surfactin production of Bacillus subtilis fmbR by replacement of the native promoter with the Pspac promoter. Canadian Journal of Microbiology 2009, 55:1003-1006.
Tapi A., Chollet-Imbert M., Scherens B., Jacques P. New approach for the detection of non ribosomal peptides synthetases of Bacillus strains by Polymerase Chain Reaction. Applied Microbiology and Biotechnology 2010, 85:1521-1531.
Tosato V., Albertini A.M., Zotti M., Sonda S., Bruschi C.V. Sequence completion, identification and definition of the fengycin operon in Bacillus subtilis 168. Microbiology 1997, 143:3443-3450.
Tsuge K., Akiyama T., Shoda M. Cloning, sequencing, and characterization of the iturin A operon. Journal of Bacteriology 2001, 183:6265-6273.
Vater J., Kablitz B., Wilde C., Franke P., Mehta N., Cameotra S.S. Matrix-Assisted Laser Desorption Ionization Time of Flight Mass Spectrometry of lipopeptide biosurfactants in whole cells and culture filtrates of Bacillus subtilis C-1 isolated from petroleum sludge. Applied and Environmental Microbiology 2002, 68:6210-6219.
Wang J., Fung D.Y.C. Alkaline-fermented foods. A review with emphasis on Pidan fermentation. Critical Reviews in Microbiology 1996, 22:101-138.
Wattiau P., Renard M.E., Ledent P., Debois V., Blackman G., Agathos S.N. A PCR test to identify Bacillus subtilis and closely related species and its application to the monitoring of wastewater biotreatment. Applied Microbiology and Biotechnology 2001, 56:816-819.
Wu X.Y., Walker M.J., Hornitzky M., Chin J. Development of a group-specific PCR combined with ARDRA for the identification of Bacillus species of environmental significance. Journal of Microbiological Methods 2006, 64:107-119.
Yagoub A.E.G.A., Mohamed B.E., Ahmed A.H.R., El Tinay A.H. Study on Furundu, a traditional sudanese fermented roselle (Hibiscus sabdariffa) seed: effect on in vitro protein digestibility, chemical composition and functional properties of the total proteins. Journal of Agriculture and Food Chemistry 2004, 52:6143-6150.
