Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus.

Shay, T. L.; Berghmans, S.; SEGERS, Karin; Meyers, S.; Beever, J. E.; Womack, J. E.; Cockett, N. E.; Georges, Michel; Charlier, Carole

doi:10.1007/s003350010248

No full text

Article (Scientific journals)

Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus.

Shay, T. L.; Berghmans, S.; SEGERS, Karin et al.

2001 • In Mammalian Genome, 12 (2), p. 141-9

Peer Reviewed verified by ORBi

Permalink
https://hdl.handle.net/2268/102190

DOI
10.1007/s003350010248

PubMed
11210184

Files (0)Send to Details Statistics Bibliography Similar publications

Files

Full Text

No document available.

Send to

RIS BibTex APA Chicago Permalink X Linkedin

Details

Keywords :

Animals; Cattle; Cloning, Molecular; Contig Mapping; Cricetinae; Crosses, Genetic; Genotype; Male; Microsatellite Repeats/genetics; Muscle Development; Muscle Fibers, Fast-Twitch/metabolism; Muscle, Skeletal/growth & development/metabolism; Proteins/genetics; Radiation Hybrid Mapping; Sheep

Abstract :

[en] The callipyge (CLPG) gene was fine-mapped by linkage analysis to a 4.6-cM chromosome interval on distal ovine OAR18q, flanked by microsatellite markers IDVGA30 and OY3. The OAR18q linkage map and human HSA14q transcript map were aligned by genotyping two bovine-hamster whole-genome radiation hybrid panels with the microsatellite markers, as well as with sequences corresponding to HSA 14q genes. Using Type I loci mapping to the IDVGA30-OY3 interval as anchor points, we have constructed a 1.4-Mb bovine BAC contig containing the IDVGA30-OY3 interval. We demonstrate that the IDVGA30-OY3 interval spans approximately 770 kb and contains at least four genes: YY1, WARS, DLK1, and GTL2.

Disciplines :

Genetics & genetic processes

Author, co-author :

Shay, T. L.

Berghmans, S.

SEGERS, Karin ; Centre Hospitalier Universitaire de Liège - CHU > Génétique

Meyers, S.

Beever, J. E.

Womack, J. E.

Cockett, N. E.

Georges, Michel ; Université de Liège - ULiège > Département de productions animales > GIGA-R : Génomique animale

Charlier, Carole ; Université de Liège - ULiège > Département de productions animales > GIGA-R : Génomique animale

Language :

English

Title :

Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus.

Publication date :

2001

Journal title :

Mammalian Genome

ISSN :

0938-8990

eISSN :

1432-1777

Publisher :

Springer Verlag, New York, United States - New York

Volume :

Issue :

Pages :

141-9

Peer reviewed :

Peer Reviewed verified by ORBi

Available on ORBi :

since 09 November 2011

Statistics

Number of views

68 (3 by ULiège)

Number of downloads

0 (0 by ULiège)

More statistics

Scopus citations^®

Scopus citations^®
without self-citations

OpenCitations

OpenAlex citations

Bibliography

Beechey C.V., Cattanach B.M. (1994) Viable tertiary trisomy and monosomy within the distal chromosome 12 imprinting region. Mouse Genome 92:505-506.
Carpenter C.E., Rice O.D., Cockett N.E., Snowder G.D. (1996) Histology and composition of muscles from normal and callipyge lambs. J Anim Sci 74:388-393.
Cattanach B.M., Raspberry C. (1993) Evidence for imprinting involving the distal region of chromosome 12. Mouse Genome 91:858.
Church G., Gilbert W. (1984) Genomic sequencing. Proc Natl Acad Sci USA 81:1991-1995.
Cockett N.E., Jackson S.P., Shay T.L., Nielsen D., Green R.D. (1994) Chromosomal localisation of the callipyge gene in sheep (Ovis aries) using bovine DNA markers. Proc Natl Acad Sci USA 91:3019-3023.
Cockett N.E., Jackson S., Shay T.L., Farnir F., Berghmans S. (1996) Polar overdominance at the ovine callipyge locus. Science 273:236-238.
Cottingham R.W., Idury R.M., Schaffer A.A. (1993) Faster sequential genetic linkage computations. Am J Hum Genet 53:252-263.
Crawford A.M., Dodds K.G., Ede A.J., Pierson C.A., Montgomery G.W. (1995) An autosomal genetic linkage map of the sheep genome. Genetics 140:703-724.
Deloukas P., Schuler G.D., Gyapay G., Beasley E.M., Soderlund C. (1998) A physical map of the 30,000 human genes. Science 282:744-746.
Dib C., Faure S., Fizames C., Samson D., Drouot N. (1996) A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380:152-154.
Freking B.A., Keele J.W., Beattie C.W., Kappes S.M., Smith T.P. (1998) Evaluation of the ovine callipyge locus: I. Relative chromosomal position and gene action. J Anim Sci 76:2062-2071.
Freking B.A., Keele J.W., Nielsen M.K., Leymaster K.A. (1998) Evaluation of the ovine callipyge locus: II. Genotypic effects on meat quality traits. J Anim Sci 77:2336-2344.
Freking B.A., Keele J.W., Shackelford S.D., Wheeler T.L., Koohmaraie M. (1998) Evaluation of the ovine callipyge locus: II. Genotypic effects on growth, slaughter, and carcass traits. J Anim Sci 76:2549-2559.
Georges M., Gunawardana A., Threadgill D., Lathrop M., Olsaker I. (1991) Characterization of a set of variable number of tandem repeat markers conserved in Bovidae. Genomics 11:24-32.
Georges M., Nielsen D., Mackinnon M., Mishra A., Okimoto R. (1995) Mapping quantitative trait loci controlling milk production by exploiting progeny testing. Genetics 139:907-920.
Georgiades P., Chierakul C., Ferguson-Smith A.C. (1998) Parental origin effects in human trisomy for chromosome 14q: Implications for genomic imprinting. J Med Genet 35:821-824.
Gill C.A., Davis S.K., Taylor J.F., Cockett N.E., Bottema C.D.K. (1999) Construction and characterization of an ovine bacterial artificial chromosome library. Mamm Genome 10:1108-1111.
Jackson S.P., Green R.D., Miller M.F. (1997) Phenotypic characterization of Rambouillet sheep expressing the callipyge gene: I. Inheritance of the condition and production. J Anim Sci 75:14-21.
Jackson S.P., Miller M.F., Green R.D. (1997) Phenotypic characterization of Rambouillet sheep expressing the callipyge gene: II. Carcass characteristics and retail yield. J Anim Sci 75:125-132.
Jackson S.P., Miller M.F., Green R.D. (1997) Phenotypic characterization of Rambouillet sheep expressing the callipyge gene: II. Muscle weights and muscle weight distribution. J Anim Sci 75:133-139.
Kappes S.M., Keele J.W., Stone R.T., McGraw R.A., Sonstegard T.S. (1997) A second generation linkage map of the bovine genome. Genome Res 7:235-249.
Kaukinen J., Varvio S.-L. (1992) Artiodactyl retroposons: Association with microsatellites and use in SINE-morph detection by PCR. Nucleic Acids Res 29:2955-2958.
Koohmaraie M., Shackelford S.D., Wheeler T.L., Lonergan S.M., Doumit M.E. (1995) A muscle hypertrophy condition in lamb (callipyge): Characterization of effects on muscle growth and meat quality traits. J Anim Sci 73:3596-3607.
Laborda J. (2000) The role of epidermal growth factor-like protein dlk in cell differentiation. Histol Histopathol 15:119-129.
Lander E., Green P. (1987) Construction of multilocus genetic linkage maps in humans. Proc Natl Acad Sci USA 84:2363-2367.
Lathrop G.M., Lalouel J.-M., Julier C., Ott J. (1984) Strategies for multilocus linkage analysis in humans. Proc Natl Acad Sci USA 81:3443-3446.
Lenstra J.A., Van Boxtel J.A.F., Zwaagstra K.A., Schwerin M. (1993) Short interspersed nuclear element (SINE) sequences of the Bovidae. Anim Genet 24:33-39.
Libert F., Fefort A., Okimoto R., Georges M. (1993) Construction of a bovine genomic library of large yeast artificial chromosome clones. Genomics 18:270-276.
Lunetta K.L., Boehnke M., Lange K., Cox D.R. (1995) Experimental design and error detection for polyploid radiation hybrid mapping. Genome Res 5:151-163.
Lyons A.L., Laughlin T.F., Copeland N.G., Jenkins N.A., Womack J.E. (1996) Comparative anchor tagged sequences for integrative mapping of mammalian genomes. Nat Genet 15:47-56.
Paldi A., Gyapay G., Jami J. (1995) Imprinted chromosomal regions of the human genome display sex-specific meiotic recombination frequencies. Curr Biol 5:1030-1035.
Pirottin D., Poncelet D., Grobet L., Royo L.J., Brouwers B. (1999) High resolution human-bovine comparative mapping based on a closed YAC contig spanning the bovine mh locus. Mamm Genome 10:289-293.
Rexroad C.E., Owens E.K., Johnson J.S., Womack J.E. (2000) A 12,000 RAD whole genome radiation hybrid panel for high resolution mapping in cattle. Anim Genet, in press; .
Schmidt J.V., Matteson P.G., Jones B.K., Guan X.-J., Tlghman S.M. (2000) The Dlk1 and Gtl2 genes are linked and reciprocally imprinted. Genes Dev 14:1997-2002.
Schuster-Gossler K., Simon D., Guènet J.-L., Zachgo J., Gossler A. (1996) Gtl2lacz, an insertional mutation on mouse chromosome 12 with parental origin dependent phenotype. Mamm Genome 7:20-24.
Schuster-Gossler K., Bilinski P., Sado T., Ferguson-Smith A., Gossler A. (1998) The mouse Gtl2 gene is differentially expressed during embryonic development, encodes multiple alternatively spliced transcripts, and may act as an RNA. Dev Dyn 212:214-228.
Segers K., Vaiman D., Berghmans S., Shay T., Beever J. (2000) Construction and characterization of an ovine BAC contig spanning the callipyge locus. Anim Genet, in press; .
Seyfert H.-M., Interthal H., Hahnen J., Koczan D. (1993) Definition, distribution and use of a conserved Bovidae retroposon element sequence motif. Mamm Genome 4:153-158.
Solinas-Toldo S., Lengauer C., Fries R. (1995) Comparative genome map of human and cattle. Genomics 27:489-496.
Steele M., Georges M. (1991) Generation of bovine multisite haplotypes using random cosmids. Genomics 10:889-904.
Takada S., Tevendale M., Baker J., Georgiades P., Campbell E. (2000) Dlk (Delta-like) and Gtl2 are closely linked reciprocally imprinted genes on mouse chromosome 12 and are paternally methylated and coexpressed during development. Curr Biol, in press; .
Takeda H., Yamakuchi H., Ihara N., Hara K., Watanabe T. (1998) Construction of a bovine yeast artificial chromosome (YAC) library. Anim Genet 23:216-219.
Temple I.K., Cockwell A., Hassold T., Pettay D., Jacobs P. (1991) Maternal uniparental disomy for chromosome 14. J Med Genet 28:511-514.
Tobin-Janzen T.C., Womack J.E. (1992) Comparative mapping of IGHG1, IGHM, FES and FOS in domestic cattle. Immunogenetics 36:157-165.
Vaiman D., Billault A., Tabet-Aoul K., Schibler L., Vilette D. (1999) Construction and characterization of a sheep BAC library of three genome equivalents. Mamm Genome 10:585-587.
Wang J.-C.C., Passage M.B., Yen P.H., Shapiro L.J., Mohandas T.K. (1991) Uniparental heterodisomy for chromosome 14 in a phenotypically abnormal familial balanced 13/14 robertsonian translocation carrier. Am J Hum Genet 48:1069-1074.
Womack J.E., Johnson J.S., Owens E.K., Rexroad C.E., Schlapfer J. (1997) A whole-genome radiation hybrid panel for bovine gene mapping. Mamm Genome 8:854-856.