  | Gualdrón Duarte, J. L., Yuan, C., Gori, A.-S., Moreira, G. C. M., Takeda, H., Coppieters, W., Charlier, C., Georges, M., & Druet, T. (28 November 2023). Sequenced-based GWAS for linear classification traits in Belgian Blue beef cattle reveals new coding variants in genes regulating body size in mammals. Genetics, Selection, Evolution, 55 (1), 83. doi:10.1186/s12711-023-00857-4  Peer Reviewed verified by ORBi |
 | Yuan, C., Tang, L., Lopdell, T., Petrov, V. A., Oget-Ebrad, C., Moreira, G. C. M., Gualdrón Duarte, J. L., Sartelet, A., Cheng, Z., Salavati, M., Wathes, D. C., Crowe, M. A., GplusE Consortium, Coppieters, W., Littlejohn, M., Charlier, C., Druet, T., Georges, M.* , & Takeda, H.*. (October 2023). An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants. Genome Research, 33 (10), 1848 - 1864. doi:10.1101/gr.277947.123 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Lee, Y. L., Bosse, M., Takeda, H., Moreira, G. C. M., Karim, L., Druet, T., Oget-Ebrad, C., Coppieters, W., Veerkamp, R. F., Groenen, M. A. M., Georges, M., Bouwman, A. C., & Charlier, C. (01 May 2023). High-resolution structural variants catalogue in a large-scale whole genome sequenced bovine family cohort data. BMC Genomics, 24 (1), 225. doi:10.1186/s12864-023-09259-8 Peer Reviewed verified by ORBi |
  | Georges, A., Lavergne, A., Mandai, M., Lepiemme, F., Karim, L., Demeulenaere, L., Aguilar Ortmans, D., Schyns, M., Nguyen, L., Rakic, J.-M., Takahashi, M., Georges, M., & Takeda, H. (21 January 2023). Comparing the transcriptome of developing native and iPSC-derived mouse retinae by single cell RNA sequencing. Scientific Reports, 13 (1), 1223. doi:10.1038/s41598-023-28429-y Peer Reviewed verified by ORBi |
 | Yuan, C., Tang, L., Lopdell, T., Oget, C., Costa Monteiro Moreira, G., Gualdron Duarte, J. L., Cheng, Z., Salavati, M., Wathes, D. C., Crowe, M. A., GplusE consortium, Coppieters, W., Charlier, C., Druet, T., Georges, M., & Takeda, H. (08 July 2022). Enrichment of causative variants in tissue-specific and shared ATAC-Seq peaks in cattle [Paper presentation]. World Congress on Genetics Applied to Livestock Production, Rotterdam, Netherlands. Peer reviewed |
 | Perée, H., Mayer, A., Takeda, H., Karim, L., Deckers, M., Jacques, S., Mni, M., Wéry, M., Azarzar, S., Tokunaga, Y., Coppieters, W., Georges, M., & Rahmouni, S. (May 2021). Comparative analysis of ultra low input RNA sequencing methods for the study of rare immune cell populations [Poster presentation]. 33rd meeting on The Biology of Genomes. |
 | Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ingvartsen, K. I., Ferris, C., Hostens, M., & Crowe, M. A. (2021). Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation. Journal of Dairy Science, 104 (3), 3596-3616. doi:10.3168/jds.2020-19165 Peer Reviewed verified by ORBi |
 | Cheng, Z., Buggiotti, L., Salavati, M., Marchitelli, C., Palma-Vera, S., Wylie, A., Takeda, H., Tang, L., Crowe, M. A., & Wathes, D. C. (2021). Global transcriptomic profiles of circulating leucocytes in early lactation cows with clinical or subclinical mastitis. Molecular Biology Reports. doi:10.1007/s11033-021-06494-8 Peer Reviewed verified by ORBi |
 | Lee, Y.-L., Takeda, H., Costa Monteiro Moreira, G., Karim, L., Mullaart, E., Coppieters, W., Appeltant, R., Veerkamp, R. F., Groenen, M. A. M., Georges, M., Bosse, M., Druet, T., Bouwman, A. C., & Charlier, C. (2021). A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle. PLoS Genetics, 17 (7), 1009331. doi:10.1371/journal.pgen.1009331 Peer Reviewed verified by ORBi |
Lee, Y.-L., Takeda, H., Costa Monteiro Moreira, G., Karim, L., Bosse, M., Bouwan, A., Mullaart, E., Coppieters, W., Georges, M., Druet, T., & Charlier, C. (02 December 2020). Fine resolution CNV catalogue from deeply sequenced cattle genomes [Paper presentation]. EAAP annual meeting. |
 | GEORGES, A., Lavergne, A., Mandai, M., Lepiemme, F., Karim, L., Demeulenaere, L., Aguilar Ortmans, D., Schyns, M., Nguyen, L., RAKIC, J.-M., Takahashi, M., Georges, M., & Takeda, H. (2020). Combined analysis of single cell RNA-Seq and ATAC-Seq data reveals putative regulatory toggles operating in native and iPS-derived retina. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/292544. doi:10.1101/2020.03.02.972497 |
 | De Koster, J., Salavati, M., Grelet, C., Crowe, M. A., Matthews, E., O'Flaherty, R., Opsomer, G., Foldager, L., Hostens, M., McLoughlin, N., Fahey, A., Santoro, A., Byrne, C., Rudd, P., Hallinan, S., Wathes, C., Cheng, Z., Fouladi, A., Pollott, G., ... GplusE. (April 2019). Corrigendum to “Prediction of metabolic clusters in early-lactation dairy cows using models based on milk biomarkers”. Journal of Dairy Science, 102 (4), 3778. doi:10.3168/jds.2019-102-4-3778 |
 | Xu, X., Ectors, F., Davis, E. E., Pirottin, D., Cheng, H., Farnir, F., Hadfield, T., Cockett, N., Charlier, C., Georges, M., & Takeda, H. (16 October 2015). Ectopic Expression of Retrotransposon-Derived PEG11/RTL1 Contributes to the Callipyge Muscular Hypertrophy. PLoS ONE, 10 (10), 0140594. doi:10.1371/journal.pone.0140594 Peer Reviewed verified by ORBi |
 | Cheng, H., Xu, X., Hadfield, T., Cockett, N., Charlier, C., Georges, M., & Takeda, H. (30 October 2014). Experimental evaluation does not reveal a direct effect of microRNA from the callipyge locus on DLK1 expression. BMC Genomics, 15, 944. doi:10.1186/1471-2164-15-944 Peer Reviewed verified by ORBi |
 | Rosewick, N., Momont, M., Durkin, K., Takeda, H., Caiment, F., Cleuter, Y., Vernin, C., Mortreux, F., Wattel, E., Burny, A., Georges, M., & Van den Broeke, A. (2013). Deep sequencing reveals abundant non-canonical retroviral microRNAs in B-cell leukemia/lymphoma. Proceedings of the National Academy of Sciences of the United States of America. Peer Reviewed verified by ORBi |
 | Karim, L.* , Takeda, H.* , Lin, L.* , Druet, T.* , Arias, J. A. C., Baurain, D., Cambisano, N., Davis, S. R., Farnir, F., Grisart, B., Harris, B. L., Keehan, M. D., Littlejohn, M. D., Spelman, R. J., Georges, M.* , & Coppieters, W.*. (2011). Variants modulating the expression of a chromosome domain encompassing PLAG1 influence bovine stature. Nature Genetics, 43 (5), 405-13. doi:10.1038/ng.814 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Takeda, H., Charlier, C., Farnir, F., & Georges, M. (2010). Demonstrating polymorphic miRNA-mediated gene regulation in vivo: application to the g+6223G->A mutation of Texel sheep. RNA, 16 (9), 1854-63. doi:10.1261/rna.2131110 Peer Reviewed verified by ORBi |
 | Katrincsakova, B., Takeda, H., Urbankova, H., Michaux, L., Jarosova, M., Vandenberghe, P., Georges, M., Charlier, C., & Wlodarska, I. (2009). Methylation analysis of the imprinted DLK1-GTL2 domain supports the random parental origin of the IGH-involving del(14q) in B-cell malignancies. Epigenetics, 4 (7), 469-75. doi:10.4161/epi.4.7.9924 Peer reviewed |
 | Pirottin, D., Takeda, H., Tamma, N., Delcombel, R., Georges, M., & Charlier, C. (2008). A mouse model for polar overdominance ? In XX International Congress of Genetics. Peer reviewed |
 | Pirottin, D., Caiment, F., Takeda, H., Tamma, N., Georges, M., & Charlier, C. (2007). A mouse model for polar overdominance ? In Workshop RiboReg, Carry le Rouet, France, 2007. Peer reviewed |
 | Georges, M., Clop, A., Marcq, F., Takeda, H., Pirottin, D., Tordoir, X., Hiard, S., Bibé, B., Bouix, J., Caiment, F., Eychenne, F., Larzul, C., Laville, E., Meish, F., Milenkovic, D., Tobin, J., & Charlier, C. (June 2006). Polymorphic miRNA-target interactions : A Novel Source of Phenotypic Variation. Cold Spring Harbor Symposia on Quantitative Biology, 71, 343-350. doi:10.1101/sqb.2006.71.056 Peer Reviewed verified by ORBi |
 | Takeda, H., Caiment, F., Smit, M., Hiard, S., Tordoir, X., Cockett, N., Georges, M.* , & Charlier, C.*. (23 May 2006). The callipyge mutation enhances bidirectional long-range DLK1-GTL2 intergenic transcription in cis. Proceedings of the National Academy of Sciences of the United States of America, 103 (21), 8119-8124. doi:10.1073/pnas.0602844103 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Clop, A.* , Marcq, F.* , Takeda, H.* , Pirottin, D.* , Tordoir, X., Bibe, B., Bouix, J., Caiment, F., Elsen, J.-M., Eychenne, F., Larzul, C., Laville, E., Meish, F., Milenkovic, D., Tobin, J., Charlier, C., & Georges, M. (2006). A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nature Genetics, 38 (7), 813-8. doi:10.1038/ng1810 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Pirottin, D., Takeda, H., Georges, M., & Charlier, C. (2006). A mouse model for polar overdominance ? In Conférences Monod : Epigenetic Perspectives from Multiple Organisms. Peer reviewed |
 | Georges, M., Charlier, C., Smit, M., Davis, E., Shay, T., Tordoir, X., Takeda, H., Caiman, F., & Cockett, N. (2004). Toward molecular understanding of polar overdominance at the ovine callipyge locus. In B. Stillman & D. Stewart (Eds.), "Epigenetics” Cold Spring Harbor Symposium on Quantitative Biology (pp. 477-483). Cold Spring Harbor Laboratory Press. doi:10.1101/sqb.2004.69.477 Peer reviewed |
 | Pirottin, D., Poncelet, D., Grobet, L., Royo, L. J., Brouwers, B., Masabanda, J., Takeda, H., Fries, R., Sugimoto, Y., Womack, J. E., Dunner, S., & Georges, M. (1999). High-Resolution, Human-Bovine Comparative Mapping Based on a Closed Yac Contig Spanning the Bovine Mh Locus. Mammalian Genome, 10 (3), 289-93. doi:10.1007/s003359900988 Peer Reviewed verified by ORBi |