Buée M, Reich M, Murat C, Morin E, Nilsson RH, et al. (2009) 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol 184: 449-456.
Lindahl BD, Ihrmark K, Boberg J, Trumbore SE, Högberg P, et al. (2007) Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest. New Phytol 173: 611-620.
O'Brien HE, Parrent JL, Jackson JA, Moncalvo JM, Vilgalys R (2005) Fungal community analysis by large-scale sequencing of environmental samples. Appl Environ Microbiol 71: 5544-5550.
Edwards IP, Upchurch RA, Zak DR (2008) Isolation of fungal Cellobiohydrolase I genes from sporocarps and forest soils by PCR. Appl Environ Microbiol 74: 3481-3489.
Luis P, Walther G, Kellner H, Martin F, Buscot F (2004) Diversity of laccase genes from basidiomycetes in a forest soil. Soil Biol Biochem 36: 1025-1036.
Luis P, Kellner H, Zimdars B, Langer U, Martin F, et al. (2005) Patchiness and spatial distribution of laccase genes of ectomycorrhizal, saprotrophic and unknown basidiomycetes in the upper horizons of a mixed forest Cambisol. Microb Ecol 50: 570-579.
Lyons JI, Newell SY, Buchan A, Moran MA (2003) Diversity of ascomycete laccase gene sequences in a Southeastern US salt marsh. Microb Ecol 45: 270-281.
Courty PE, Poletto M, Duchaussoy F, Buée M, Garbaye J, et al. (2008) Gene transcription in Lactarius quietus-Quercus petraea ectomycorrhizas from a forest soil. Appl Environ Microbiol 74: 6598-6605.
Kellner H, Luis P, Schlitt B, Buscot F (2009) Temporal changes in diversity and expression patterns of fungal laccase genes within the organic horizon of a brown forest soil. Soil Biol Biochem 41: 1380-1389.
Kellner H, Zak DR (2009) Detection of expressed fungal type I polyketide synthase genes in a forest soil. Soil Biol Biochem 41: 1344-1347.
Luis P, Kellner H, Martin F, Buscot F (2005) A molecular method to evaluate basidiomycete laccase gene expression in forest soils. Geoderma 128: 18-27.
Bailly J, Fraissinet-Tachet L, Verner MC, Debaud JC, Lemaire M, et al. (2007) Soil eukaryotic functional diversity, a metatranscriptomic approach. ISME J 1: 632-642.
Berg B, Matzner E (1997) Effect of N deposition on decomposition of plant litter and soil organic matter in forest systems. Environ Rev 5: 1-25.
Goodale CL, Apps MJ, Birdsey RA, Field CB, Heath LS, et al. (2002) Forest carbon sinks in the Northern Hemisphere. Ecol Appl 12: 891-899.
DeForest JL, Zak DR, Pregitzer KS, Burton AJ (2004) Atmospheric nitrate deposition, microbial community composition, and enzyme activity in Northern Hardwood forests. Soil Sci Soc Am J 68: 132-138.
Kües U (2007) Wood production, wood technology, and biotechnological impacts. Universitä tsverlag Göttingen, Germany. 635 p.
Bödeker ITM, Nygren CMR, Taylor AFS, Olson A, Lindahl BD (2009) ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi. ISME J 3: 1387-1395.
Kögel-Knabner I (2002) The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biol Biochem 34: 139-162.
Hofrichter M (2002) Review: lignin conversion by manganese peroxidase (MnP). Enzyme Microb Technol 30: 454-466.
Baldrian P (2006) Fungal laccases: occurrence and properties. FEMS Microbiol Rev 30: 215-242.
Baldrian P, Valaáškovaá V (2008) Degradation of cellulose by basidiomycetous fungi. FEMS Microbiol Rev 32: 501-521.
Levasseur A, Piumi F, Coutinho PM, Rancurel C, Asther M, et al. (2008) FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genet Biol 45: 638-645.
Pecyna MJ, Ullrich R, Bittner B, Clemens A, Scheibner K, et al. (2009) Molecular characterization of aromatic peroxygenase from Agrocybe aegerita. Appl Microbiol Biotechnol 84: 885-897.
Morris DR, Hager LP (1966) Chloroperoxidase. I. Isolation and properties of the crystalline glycoprotein. J Biol Chem 241: 1763-1768.
Ullrich R, Hofrichter M (2005) The haloperoxidase of the agaric fungus Agrocybe aegerita hydroxylates toluene and naphthalene. FEBS Lett 579: 6247-6250.
Halaouli S, Asther M, Sigoillot J-C, Hamdi M, Lomascolo A (2006) Fungal tyrosinases: new prospects in molecular characteristics, bioengineering and biotechnological applications. J Appl Microbiol 100: 219-232.
Burke RM, Cairney JWG (2002) Laccases and other polyphenol oxidases in ecto- and ericoid mycorrhizal fungi. Mycorrhiza 12: 105-116.
Sinsabaugh RL (2010) Phenol oxidase, peroxidase and organic matter dynamics of soil. Soil Biol Biochem 42: 391-404.
Rieble S, Joshi DK, Gold MH (1994) Purification and characterization of a 1,2,4-trihydroxybenzene 1,2-dioxygenase from the basidiomycete Phanerochaete chrysosporium. J Bacteriol 176: 4838-4844.
Svedružić D, Jo ́nsson S, Toyota CG, Reinhardt LA, Ricagno S, et al. (2005) The enzymes of oxalate metabolism: unexpected structures and mechanisms. Arch Biochem Biophys 433: 176-192.
Coutinho PM, Henrissat B (1999) Carbohydrate-active enzymes: an integrated database approach. In: Gilbert HJ, Davies G, Henrissat B, Svensson B, eds. Recent Advances in Carbohydrate Bioengineering, The Royal Society of Chemistry, Cambridge. pp 3-12.
Henrissat B (1991) A classification of glycosyl hydrolases based on amino-acid sequence similarities. Biochem J 280: 309-316.
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, et al. (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: D233-238.
Jacobsen J, Lydolph M, Lange L (2005) Culture independent PCR: an alternative enzyme discovery strategy. J Microbiol Methods 60: 63-71.
Tian XJ, Takeda H, Azuma J (2000) Dynamics of organic-chemical components in leaf litters during a 3.5-year decomposition. Eur J Soil Biol 36: 81-89.
Hoegger PJ, Majcherczyk A, Dwivedi RC, Svobodová K, Kilaru S, et al. (2007) Enzymes in wood degradation. In: Kües U, ed. Wood production, wood technology, and biotechnological impacts, Universitä tsverlag Göttingen, Germany. pp 383-432.
Schulze WX, Gleixner G, Kaiser K, Guggenberger G, Mann M, et al. (2005) A proteomic fingerprint of dissolved organic carbon and of soil particles. Oecologia 142: 335-343.
Urich T, Lanzén A, Qi J, Huson DH, Schleper C, et al. (2008) Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome. PLoS ONE 3(6): e2527.
Baldrian P (2008) Enzymes of Saprotrophic Basidiomycetes. In: Boddy L, Frankland J, vanWest P, eds. Ecology of Saprotrophic Basidiomycetes, Academic Press, New York. pp 19-41.
Baldrian P (2009) Ectomycorrhizal fungi and their enzymes in soils: is there enough evidence for their role as facultative soil saprotrophs? Oecologia 161: 657-660.
Cullings K, Courty P-E (2009) Saprotrophic capabilities as functional traits to study functional diversity and resilience of ectomycorrhizal community Oecologia 161: 661-664.
deVries W, Solberg S, Dobbertin M, Sterba H, Laubhahn D, et al. (2008) Ecologically implausible carbon response? Nature 451: E1-E3.
Magnani F, Mencuccini M, Borghetti M, Berbigier P, Berninger F, et al. (2007) The human footprint in the carbon cycle of temperate and boreal forests. Nature 447: 849-851.
Sutton MA, Simpson D, Levy PE, Smith RI, Reis S, et al. (2008) Uncertainties in the relationship between atmospheric nitrogen deposition and forest carbon sequestration. Glob Chang Biol 14: 2057-2063.
Nadelhoffer KJ, Emmett BA, Gundersen P, Kjønaas OJ, Koopmans CJ, et al. (1999) Nitrogen deposition makes a minor contribution to carbon sequestration in temperate forests. Nature 398: 145-148.
Reay DS, Dentener F, Smith P, Grace J, Feely RA (2008) Global nitrogen deposition and carbon sinks. Nat Geosci 1: 430-437.
Boominathan K, Dass SB, Randall TA, Reddy CA (1990) Nitrogen-deregulated mutants of Phanerochaete chrysosporium - a lignin-degrading basidiomycete. Arch Microbiol 153: 521-527.
Vanderwoude MW, Boominathan K, Reddy CA (1993) Nitrogen regulation of lignin peroxidase and manganese-dependent peroxidase production is independent of carbon and manganese regulation in Phanerochaete chrysosporium. Arch Microbiol 160: 1-4.
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
