Abdrakhmanova A, Zickermann V, Bostina M, Radermacher M, Schagger H, Kerscher S, Brandt U (2004) Subunit composition of mitochondrial complex I from the yeast Yarrowia lipolytica. Biochim Biophys Acta 1658: 148-156
Abrahams JP, Leslie AG, Lutter R, Walker JE (1994) Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria. Nature 370: 621-628
Ackerman SH, Tzagoloff A (1990a) ATP 10, a yeast nuclear gene required for the assembly of the mitochondrial F1-F0 complex. J Biol Chem 265: 9952-9959
Ackerman SH, Tzagoloff A (1990b) Identification of two nuclear genes (ATP11, ATP12) required for assembly of the yeast F1-ATPase. Proc Natl Acad Sci USA 87: 4986-4990
Amati BB, Goldschmidt-Clermont M, Wallace CJ, Rochaix JD (1988) cDNA and deduced amino acid sequences of cytochrome c from Chlamydomonas reinhardtii: unexpected functional and phylogenetic implications. J Mol Evol 28: 151-160
Andersson SG, Karlberg O, Canback B, Kurland CG (2003) On the origin of mitochondria: a genomics perspective. Philos Trans R Soc Lond B Biol Sci 358: 165-177; discussion 177-179
Atteia A (1994) Identification of mitochondrial respiratory proteins from the green alga Chlamydomonas reinhardtii. C R Acad Sci III 317: 11-19
Atteia A, van Lis R, Wetterskog D, Gutierrez-Cirlos EB, Ongay-Larios L, Franzen LG, Gonzalez-Halphen D (2003) Structure, organization and expression of the genes encoding mitochondrial cytochrome c(1) and the Rieske iron-sulfur protein in Chlamydomonas reinhardtii. Mol Genet Genomics 268: 637-644
Barrientos A, Korr D, Tzagoloff A (2002) Shy1p is necessary for full expression of mitochondrial COX1 in the yeast model of Leigh's syndrome. EMBO J 21: 43-52
Barrientos A, Zambrano A, Tzagoloff A (2004) Mss51p and Cox14p jointly regulate mitochondrial Cox1p expression in Saccharomyces cerevisiae. EMBO J 23: 3472-3482
Barros MH, Johnson A, Tzagoloff A (2004) COX23, a homologue of COX17, is required for cytochrome oxidase assembly. J Biol Chem 279: 31943-31947
Barros MH, Tzagoloff A (2002) Regulation of the heme: a biosynthetic pathway in Saccharomyces cerevisiae. FEBS Lett 516: 119-123
Baurain D, Dinant M, Coosemans N, Matagne RF (2003) Regulation of the alternative oxidase Aox1 gene in Chlamydomonas reinhardtii: role of the nitrogen source on the expression of a reporter gene under the control of the Aox1 promoter. Plant Physiol 131: 1418-1430
Bjellqvist B, Hughes GJ, Pasquali C, Paquet N, Ravier F, Sanchez JC, Frutiger S, Hochstrasser D (1993) The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis 14: 1023-1031
Bousquet I, Dujardin G, Slonimski PP (1991) ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J 10: 2023-2031
Brandt U, Yu L, Yu CA, Trumpower BL (1993) The mitochondrial targeting presequence of the Rieske iron-sulfur protein is processed in a single step after insertion into the cytochrome bc1 complex in mammals and retained as a subunit in the complex. J Biol Chem 268: 8387-8390
Braun HP, Schmitz UK (1995) The bifunctional cytochrome c reductase/ processing peptidase complex from plant mitochondria. J Bioenerg Biomembr 27: 423-436
Broadley SA, Demlow CM, Fox TD (2001) Peripheral mitochondrial inner membrane protein, Mss2p, required for export of the mitochondrially coded Cox2p C tail in Saccharomyces cerevisiae. Mol Cell Biol 21: 7663-7672
Cardol P, Matagne RF, Remacle C (2002) Impact of mutations affecting ND mitochondria-encoded subunits on the activity and assembly of complex I in Chlamydomonas: implication for the structural organization of the enzyme. J Mol Biol 319: 1211-1221
Cardol P, Vanrobaeys F, Devreese B, Van Beeumen J, Matagne R, Remacle C (2004) Higher plant-like subunit composition of the mitochondrial complex I from Chlamydomonas reinhardtii: 31 conserved components among eukaryotes. Biochim Biophys Acta 1658: 212-214
Carlson CG, Barrientos A, Tzagoloff A, Glerum DM (2003) COX16 encodes a novel protein required for the assembly of cytochrome oxidase in Saccharomyces cerevisiae. J Biol Chem 278: 3770-3775
Collinson IR, Runswick MJ, Buchanan SK, Fearnley IM, Skehel JM, van Raaij MJ, Griffiths DE, Walker JE (1994) Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1-ATPase. Biochemistry 33: 7971-7978
Crivellone MD (1994) Characterization of CBP4, a new gene essential for the expression of ubiquinol-cytochrome c reductase in Saccharomyces cerevisiae. J Biol Chem 269: 21284-21292
Cruciat CM, Hell K, Folsch H, Neupert W, Stuart RA (1999) Bcs1p, an AAA-family member, is a chaperone for the assembly of the cytochrome bc(1) complex. EMBO J 18: 5226-5233
Daley DO, Clifton R, Whelan J (2002) Intracellular gene transfer: Reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase. Proc Natl Acad Sci USA 99: 10510-10515
Dibrov E, Fu S, Lemire BD (1998) The Saccharomyces cerevisiae TCM62 gene encodes a chaperone necessary for the assembly of the mitochondrial succinate dehydrogenase (complex II). J Biol Chem 273: 32042-32048
Dieckmann CL, Pape LK, Tzagoloff A (1982) Identification and cloning of a yeast nuclear gene (CBP1) involved in expression of mitochondrial cytochrome b. Proc Natl Acad Sci USA 79: 1805-1809
Dieckmann CL, Tzagoloff A (1985) Assembly of the mitochondrial membrane system: CBP6, a yeast nuclear gene necessary for synthesis of cytochrome b. J Biol Chem 260: 1513-1520
Dinant M, Baurain D, Coosemans N, Joris B, Matagne RF (2001) Characterization of two genes encoding the mitochondrial alternative oxidase in Chlamydomonas reinhardtii. Curr Genet 39: 101-108
Dupuis A, Chevallet M, Darrouzet E, Duborjal H, Lunardi J, Issartel JP (1998) The complex I from Rhodobacter capsulatus. Biochim Biophys Acta 1364: 147-165
Ellis TP, Helfenbein KG, Tzagoloff A, Dieckmann CL (2004) Aep3p stabilizes the mitochondrial bicistronic mRNA encoding subunits 6 and 8 of the H+-translocating ATP synthase of Saccharomyces cerevisiae. J Biol Chem 279: 15728-15733
Eriksson M, Gardestrom P, Samuelsson G (1995) Isolation, purification and characterization of mitochondria from Chlamydomonas reinhardtii. Plant Physiol 107: 479-483
Eubel H, Jansch L, Braun HP (2003) New insights into the respiratory chain of plant mitochondria: supercomplexes and a unique composition of complex II. Plant Physiol 133: 274-286
Fan J, Lee RW (2002) Mitochondrial genome of the colorless green alga Polytomella parva: two linear DNA molecules with homologous inverted repeat Termini. Mol Biol Evol 19: 999-1007
Finnegan PM, Ellis TP, Nagley P, Lukins HB (1995) The mature AEP2 gene product of Saccharomyces cerevisiae, required for the expression of subunit 9 of ATP synthase, is a 58 kDa mitochondrial protein. FEBS Lett 368: 505-508
Forsha D, Church C, Wazny P, Poyton RO (2001) Structure and function of Pet100p, a molecular chaperone required for the assembly of cytochrome c oxidase in Saccharomyces cerevisiae. Biochem Soc Trans 29: 436-441
Friedrich T, Abelmann A, Brors B, Guenebaut V, Kintscher L, Leonard K, Rasmussen T, Scheide D, Schlitt A, Schulte U, et al (1998) Redox components and structure of the respiratory NADH:ubiquinone oxido-reductase (complex I). Biochim Biophys Acta 1365: 215-219
Funes S, Davidson E, Claros MG, van Lis R, Perez-Martinez X, Vazquez-Acevedo M, King MP, Gonzalez-Halphen D (2002) The typically mitochondrial DNA-encoded ATP6 subunit of the F1F0-ATPase is encoded by a nuclear gene in Chlamydomonas reinhardtii. J Biol Chem 277: 6051-6058
Funes S, Nargang FE, Neupert W, Herrmann JM (2004) The Oxa2 protein of Neurospora crassa plays a critical role in the biogenesis of cytochrome oxidase and defines a ubiquitous subbranch of the Oxa1/YidC/Alb3 protein family. Mol Biol Cell 15: 1853-1861
Glaser E, Dessi P (1999) Integration of the mitochondrial-processing peptidase into the cytochrome bc1 complex in plants. J Bioenerg Biomembr 31: 259-274
Glerum DM, Tzagoloff A (1994) Isolation of a human cDNA for heme A:farnesyltransferase by functional complementation of a yeast cox10 mutant. Proc Natl Acad Sci USA 91: 8452-8456
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, et al (1996) Life with 6000 genes. Science 274: 546, 563-547
Gray MW, Boer PH (1988) Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial DNA. Philos Trans R Soc Lond B Biol Sci 319: 135-147
Hamanaka S, Ohtsu K, Kadowaki K, Nakazono M, Hirai A (1999) Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice: comparison of its expression with nuclear-encoded and mitochondrial- encoded COX genes. Genes Genet Syst 74: 71-75
Hatefi Y, Galante YM, Stiggall DL, Ragan CI (1979) Proteins, polypeptides, prosthetic groups, and enzymic properties of complexes I, II, III, IV, and V of the mitochondrial oxidative phosphorylation system. Methods Enzymol 56: 577-602
He S, Fox TD (1997) Membrane translocation of mitochondrially coded Cox2p: distinct requirements for export of N and C termini and dependence on the conserved protein Oxa1p. Mol Biol Cell 8: 1449-1460
Heazlewood JL, Howell KA, Millar AH (2003a) Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plant-specific subunits. Biochim Biophys Acta 1604: 159-169
Heazlewood JL, Tonti-Filippini JS, Gout AM, Day DA, Whelan J, Millar AH (2004) Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Plant Cell 16: 241-256
Heazlewood JL, Whelan J, Millar AH (2003b) The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase. FEBS Lett 540: 201-205
Helfenbein KG, Ellis TP, Dieckmann CL, Tzagoloff A (2003) ATP22, a nuclear gene required for expression of the F0 sector of mitochondrial ATPase in Saccharomyces cerevisiae. J Biol Chem 278: 19751-19756
Hell K, Tzagoloff A, Neupert W, Stuart RA (2000) Identification of Cox20p, a novel protein involved in the maturation and assembly of cytochrome oxidase subunit 2. J Biol Chem 275: 4571-4578
Hirst J, Carroll J, Fearnley IM, Shannon RJ, Walker JE (2003) The nuclear encoded subunits of complex I from bovine heart mitochondria. Biochim Biophys Acta 1604: 135-150
Horng YC, Cobine PA, Maxfield AB, Carr HS, Winge DR (2004) Specific copper transfer from the Cox17 metallochaperone to both Sco1 and Cox11 in the assembly of yeast cytochrome C oxidase. J Biol Chem 279: 35334-35340
Iwata S, Lee JW, Okada K, Lee JK, Iwata M, Rasmussen B, Link TA, Ramaswamy S, Jap BK (1998) Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex. Science 281: 64-71
Jansch L, Kruft V, Schmitz UK, Braun HP (1996) New insights into the composition, molecular mass and stoichiometry of the protein complexes of plant mitochondria. Plant J 9: 357-368
Janssen R, Smeitink J, Smeets R, van Den Heuvel L (2002) CIA30 complex I assembly factor: a candidate for human complex I deficiency? Hum Genet 110: 264-270
Karlberg O, Canback B, Kurland CG, Andersson SG (2000) The dual origin of the yeast mitochondrial proteome. Yeast 17: 170-187
Kerscher S, Kashani-Poor N, Zwicker K, Zickermann V, Brandt U (2001) Exploring the catalytic core of complex I by Yarrowia lipolytica yeast genetics. J Bioenerg Biomembr 33: 187-196
Klanner C, Neupert W, Langer T (2000) The chaperonin-related protein Tcm62p ensures mitochondrial gene expression under heat stress. FEBS Lett 470: 365-369
Kranz R, Lill R, Goldman B, Bonnard G, Merchant S (1998) Molecular mechanisms of cytochrome c biogenesis: three distinct systems. Mol Microbiol 29: 383-396
Kuffner R, Rohr A, Schmiede A, Krull C, Schulte U (1998) Involvement of two novel chaperones in the assembly of mitochondrial NADH: Ubiquinone oxidoreductase (complex I). J Mol Biol 283: 409-417
Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132
Lange C, Hunte C (2002) Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c. Proc Natl Acad Sci USA 99: 2800-2805
Leary SC, Kaufman BA, Pellecchia G, Guercin GH, Mattman A, Jaksch M, Shoubridge EA (2004) Human SCO1 and SCO2 have independent, cooperative functions in copper delivery to cytochrome c oxidase. Hum Mol Genet 13: 1839-1848
Lefebvre-Legendre L, Vaillier J, Benabdelhak H, Velours J, Slonimski PP, di Rago JP (2001) Identification of a nuclear gene (FMC1) required for the assembly/stability of yeast mitochondrial F(1)-ATPase in heat stress conditions. J Biol Chem 276: 6789-6796
Ljungdahl PO, Pennoyer JD, Robertson DE, Trumpower BL (1987) Purification of highly active cytochrome bc1 complexes from phylogenetically diverse species by a single chromatographic procedure. Biochim Biophys Acta 891: 227-241
Lown FJ, Watson AT, Purton S (2001) Chlamydomonas nuclear mutants that fail to assemble respiratory or photosynthetic electron transfer complexes. Biochem Soc Trans 29: 452-455
Luttik MA, Overkamp KM, Kotter P, de Vries S, van Dijken JF, Pronk JT (1998) The Saccharomyces cerevisiae NDE1 and NDE2 genes encode separate mitochondrial NADH dehydrogenases catalyzing the oxidation of cytosolic NADH. J Biol Chem 273: 24529-24534
Marres CA, de Vries S, Grivell LA (1991) Isolation and inactivation of the nuclear gene encoding the rotenone-insensitive internal NADH: ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae. Eur J Biochem 195: 857-862
Martin W, Muller M (1998) The hydrogen hypothesis for the first eukaryote. Nature 392: 37-41
Matagne RF, Michel-Wolwertz MR, Munaut C, Duyckaerts C, Sluse F (1989) Induction and characterization of mitochondrial DNA mutants in Chlamydomonas reinhardtii. J Cell Biol 108: 1221-1226
Maxwell DP, Wang Y, McIntosh L (1999) The alternative oxidase lowers mitochondrial reactive oxygen production in plant cells. Proc Natl Acad Sci USA 96: 8271-8276
McEwen JE, Hong KH, Park S, Preciado GT (1993) Sequence and chromosomal localization of two PET genes required for cytochrome c oxidase assembly in Saccharomyces cerevisiae. Curr Genet 23: 9-14
McGraw P, Tzagoloff A (1983) Assembly of the mitochondrial membrane system: characterization of a yeast nuclear gene involved in the processing of the cytochrome b pre-mRNA. J Biol Chem 258: 9459-9468
Michaelis G, Vahrenholz C, Pratje E (1990) Mitochondrial DNA of Chlamydomonas reinhardtii: the gene for apocytochrome b and the complete functional map of the 15.8 kb DNA. Mol Gen Genet 223: 211-216
Michalecka AM, Svensson AS, Johansson FI, Agius SC, Johanson U, Brennicke A, Binder S, Rasmusson AG (2003) Arabidopsis genes encoding mitochondrial type II NAD(P)H dehydrogenases have different evolutionary origin and show distinct responses to light. Plant Physiol 133: 642-652
Moller IM, Rasmusson AG, Fredlund KM (1993) NAD(P)H-ubiquinone oxidoreductases in plant mitochondria. J Bioenerg Biomembr 25: 377-384
Naithani S, Saracco SA, Butler CA, Fox TD (2003) Interactions among COX1, COX2, and COX3 mRNA-specific translational activator proteins on the inner surface of the mitochondrial inner membrane of Saccharomyces cerevisiae. Mol Biol Cell 14: 324-333
Nobrega FG, Nobrega MP, Tzagoloff A (1992) BCS1, a novel gene required for the expression of functional Rieske iron-sulfur protein in Saccharomyces cerevisiae. EMBO J 11: 3821-3829
Nobrega MP, Bandeira SC, Beers J, Tzagoloff A (2002) Characterization of COX19, a widely distributed gene required for expression of mitochondrial cytochrome oxidase. J Biol Chem 277: 40206-40211
Nurani G, Franzen LG (1996) Isolation and characterization of the mitochondrial ATP synthase from Chlamydomonas reinhardtii: cDNA sequence and deduced protein sequence of the alpha subunit. Plant Mol Biol 31: 1105-1116
Parisi G, Perales M, Silvina Fornasari M, Colaneri A, Gonzalez-Schain D, Gomez-Casati D, Zimmermann S, Brennicke A, Araya A, Ferry JG, et al (2004) Gamma carbonic anhydrases in plant mitochondria. Plant Mol Biol 55: 193-207
Payne MJ, Schweizer E, Lukins HB (1991) Properties of two nuclear pet mutants affecting expression of the mitochondrial olil gene of Saccharomyces cerevisiae. Curr Genet 19: 343-351
Poyton RO, Goehring B, Droste M, Sevarino KA, Allen LA, Zhao XJ (1995) Cytochrome-c oxidase from Saccharomyces cerevisiae. Methods Enzymol 260: 97-116
Reyes-Prieto A, El-Hafidi M, Moreno-Sanchez R, Gonzalez-Halphen D (2002) Characterization of oxidative phosphorylation in the colorless chlorophyte Polytomella sp.: Its mitochondrial respiratory chain lacks a plant-like alternative oxidase. Biochim Biophys Acta 1554: 170-179
Richly E, Chinnery PF, Leister D (2003) Evolutionary diversification of mitochondrial proteomes: implications for human disease. Trends Genet 19: 356-362
Rizzuto R, Sandona D, Brini M, Capaldi RA, Bisson R (1991) The most conserved nuclear-encoded polypeptide of cytochrome c oxidase is the putative zinc-binding subunit: primary structure of subunit V from the slime mold Dictyostelium discoideum. Biochim Biophys Acta 1129: 100-104
Rodel G (1986) Two yeast nuclear genes, CBS1 and CBS2, are required for translation of mitochondrial transcripts bearing the 5′-untranslated COB leader. Curr Genet 11: 41-45
Saracco SA, Fox TD (2002) Cox18p is required for export of the mitochondrially encoded Saccharomyces cerevisiae Cox2p C-tail and interacts with Pnt1p and Mss2p in the inner membrane. Mol Biol Cell 13: 1122-1131
Schägger H, Pfeiffer K (2000) Supercomplexes in the respiratory chains of yeast and mammalian mitochondria. EMBO J 19: 1777-1783
Schon EA (2001) Gene products present in mitochondria of yeast and animal cells. In L Wilson, P Matsudaira, eds, Mitochondria. Academic Press, San Diego, pp 463-482
Shi G, Crivellone MD, Edderkaoui B (2001) Identification of functional regions of Cbp3p, an enzyme-specific chaperone required for the assembly of ubiquinol-cytochrome c reductase in yeast mitochondria. Biochim Biophys Acta 1506: 103-116
Shrager J, Hauser C, Chang CW, Harris EH, Davies J, McDermott J, Tamse R, Zhang Z, Grossman AR (2003) Chlamydomonas reinhardtii genome project: a guide to the generation and use of the cDNA information. Plant Physiol 131: 401-408
Stock D, Leslie AG, Walker JE (1999) Molecular architecture of the rotary motor in ATP synthase. Science 286: 1700-1705
Taanman JW, Capaldi RA (1992) Purification of yeast cytochrome c oxidase with a subunit composition resembling the mammalian enzyme. J Biol Chem 267: 22481-22485
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
Tsang WY, Lemire BD (2003) The role of mitochondria in the life of the nematode, Caenorhabditis elegans. Biochim Biophys Acta 1638: 91-105
Tsukihara T, Aoyama H, Yamashita E, Tomizaki T, Yamaguchi H, Shinzawa-Itoh K, Nakashima R, Yaono R, Yoshikawa S (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A. Science 272: 1136-1144
Tzagoloff A, Barrientos A, Neupert W, Herrmann JM (2004) Atp10p assists assembly of Atp6p into the F0 unit of the yeast mitochondrial ATPase. J Biol Chem 279: 19775-19780
van Lis R, Atteia A, Mendoza-Hernandez G, Gonzalez-Halphen D (2003) Identification of novel mitochondrial protein components of Chlamydomonas reinhardtii: a proteomic approach. Plant Physiol 132: 318-330
Velours J, Arselin G (2000) The Saccharomyces cerevisiae ATP synthase. J Bioenerg Biomembr 32: 383-390
Velours J, Spannagel C, Chaignepain S, Vaillier J, Arselin G, Graves PV, Velours G, Camougrand N (1998) Topography of the yeast ATP synthase F0 sector. Biochimie 80: 793-801
Videira A, Duarte M (2002) From NADH to ubiquinone in Neurospora mitochondria. Biochim Biophys Acta 1555: 187-191
Wang ZG, White PS, Ackerman SH (2001) Atp11p and Atp12p are assembly factors for the F(1)-ATPase in human mitochondria. J Biol Chem 276: 30773-30778
Weber J, Senior AE (2003) ATP synthesis driven by proton transport in F1F0-ATP synthase. FEBS Lett 545: 61-70
Xia D, Yu CA, Kim H, Xia JZ, Kachurin AM, Zhang L, Yu L, Deisenhofer J (1997) Crystal structure of the cytochrome bc1 complex from bovine heart mitochondria. Science 277: 60-66
Xu F, Morin C, Mitchell G, Ackerley C, Robinson BH (2004) The role of the LRPPRC (leucine-rich pentatricopeptide repeat cassette) gene in cytochrome oxidase assembly: mutation causes lowered levels of COX (cytochrome c oxidase) I and COX III mRNA. Biochem J 382: 331-336
Yanamura W, Zhang YZ, Takamiya S, Capaldi RA (1988) Tissue-specific differences between heart and liver cytochrome c oxidase. Biochemistry 27: 4909-4914
Zhang Z, Huang L, Shulmeister VM, Chi YI, Kim KK, Hung LW, Crofts AR, Berry EA, Kim SH (1998) Electron transfer by domain movement in cytochrome bc1. Nature 392: 677-684