[en] BACKGROUND AND AIMS: Inflammatory bowel disease (IBD), including Crohn's disease (CD) and ulcerative colitis (UC), remain heterogeneous disorders with variable response to biologics. Post-operative recurrence in CD is common despite surgery and prophylactic biotherapies. Understanding the inflammatory mediators associated with recurrence and treatment response could pave the way for personalized strategies. METHODS: We analyzed serum inflammatory protein signatures using proteomics in two prospective cohorts. The REMIND cohort included post-operative CD patients undergoing ileocecal resection with endoscopic assessment at 6 months (M6). Serum samples were collected at surgery and 6 months later. The ELYP cohort consisted of active IBD patients starting new biotherapies (anti-tumor necrosis factor [anti-TNF], ustekinumab, or vedolizumab). Serum samples were collected pre- and post-treatment (Weeks 14 and 52). RESULTS: In the REMIND cohort, proteomic analysis revealed elevated levels of IFN-γ, CXCL9, and MMP-10 in patients with recurrence, with concentrations associated with recurrence severity. Preoperative MMP-10 levels predicted severe recurrence (AUC = 0.70). Under biotherapies, treatment-specific proteins were associated with recurrence: CXCL9 for anti-TNF and OSM/TGFα modules for ustekinumab. In the ELYP cohort, IFN-γ and CXCL9 were significantly elevated in CD compared to UC and associated with disease activity. Early response to anti-TNF treatment (Week 14) was associated with reductions in CXCL9, MMP-10, and OSM, while deep remission (Week 52) correlated with decreases in CXCL9 and OSM. CONCLUSION: Our findings reveal inflammatory blood proteomic signatures associated with post-operative recurrence and biologic treatment failure in IBD. Several key biomarkers were identified. These results support the rationale for personalized approaches, including combination therapies targeting multiple pathways.ClincialTrials.gov number, NCT02693340 and NCT02693340.
Disciplines :
Gastroenterology & hepatology
Author, co-author :
Veyssière, Maëva; Université Paris Cité, INSERM U976, Paris, France.
Hammoudi, Nassim ; Université de Paris, INSERM U1342, Institut de Recherche Saint-Louis, Paris, France. ; Gastroenterology Department, AP-HP, Hôpital Saint-Louis/Lariboisière, Paris, France.
Le Bourhis, Lionel; Université de Paris, INSERM U1342, Institut de Recherche Saint-Louis, Paris, France.
Hassid, Déborah; Gastroenterology Department, AP-HP, Hôpital Saint-Louis/Lariboisière, Paris, France.
Bonnet, Joëlle; Gastroenterology Department, AP-HP, Hôpital Saint-Louis/Lariboisière, Paris, France.
Tran Minh, My-Linh; Gastroenterology Department, AP-HP, Hôpital Saint-Louis/Lariboisière, Paris, France.
Baudry, Clotilde; Gastroenterology Department, AP-HP, Hôpital Saint-Louis/Lariboisière, Paris, France.
Gornet, Jean-Marc; Gastroenterology Department, AP-HP, Hôpital Saint-Louis/Lariboisière, Paris, France.
Chardiny, Victor; Université de Paris, INSERM U1342, Institut de Recherche Saint-Louis, Paris, France.
Seksik, Philippe; Department of Gastroenterology, CRSA, Sorbonne Université, INSERM, APHP, Paris Center for Microbiome Medicine (PaCeMM) FHU, Saint-Antoine Hospital, Paris, France.
Nancey, Stéphane; Department of Gastroenterology, CHU de Lyon, Lyon-Sud hospital, Pierre-Benite, France and INSERM U1111-CIRI, Lyon, France.
Carbonnel, Franck; Department of Gastroenterology, Hopitaux Universitaires Bicêtre, AP-HP, Université Paris Saclay, INSERM CESP, Le Kremlin Bicêtre, Paris, France.
Treton, Xavier; Paris IBD Center, Groupe hospitalier privé Ambroise-Pare Hartmann, Neuilly, 92200, France.
Wils, Pauline ; Department of Gastroenterology, Claude Huriez hospital, University of Lille 2, Lille, France.
Buisson, Anthony ; Université Clermont Auvergne, 3iHP, CHU Clermont-Ferrand, Service d'Hépato- Gastroentérologie, Inserm U1071, M2iSH, USC-INRA 2018, Clermont-Ferrand, France.
Boureille, Arnaud; Nantes Université, CHU Nantes, Institut des Maladies de l'Appareil Digestif, Inserm CIC 1413, Nantes, France.
Hébuterne, Xavier; CHU de Nice et Université Côte d'Azur, Nice, France.
Serrero, Mélanie; Department of Gastroenterology, University Hospital of Marseille Nord, Assistance Publique-Hôpitaux de Marseille (AP-HM), University of Aix-Marseille, Marseille, France.
Fumery, Mathurin ; Department of Gastroenterology, Amiens University Hospital et PeriTox, UMR I-01, Université de Picardie Jules Verne, Amiens, France.
Louis, Edouard ; Université de Liège - ULiège > Département des sciences cliniques > Hépato-gastroentérologie
Blanc, Pierre; Service d'hépatogastroentérologie B, Centre Hospitalier Universitaire (CHU) Montpellier et Université de Montpellier, Montpellier, France.
Peyrin-Biroulet, Laurent; Department of Gastroenterology, CHRU Nancy, INSERM NGERE, Université de Lorraine, Vandœuvre-lès-Nancy, F-54500, France.
Bezault, Madeleine; REMIND Study Group.
Soumelis, Vassili ; Université Paris Cité, INSERM U976, Paris, France. ; Owkin France, Paris, 75010, France.
Allez, Matthieu ; Université de Paris, INSERM U1342, Institut de Recherche Saint-Louis, Paris, France. ; Gastroenterology Department, AP-HP, Hôpital Saint-Louis/Lariboisière, Paris, France. ; Department of Microbiology and Immunology, McGill University, Montreal, Quebec, Canada.
Blood proteomic signatures associated with disease activity in inflammatory bowel diseases.
Publication date :
28 September 2025
Journal title :
Journal of Crohn's and Colitis
ISSN :
1873-9946
eISSN :
1876-4479
Publisher :
Oxford University Press, Oxford, Gb
Volume :
19
Issue :
9
Peer reviewed :
Peer Reviewed verified by ORBi
Funding number :
FDM201806006069/Helmsley Charitable Trust and La Fondation pour la Recherche Médicale/
Funding text :
This work was supported by the Helmsley Charitable Trust
and La Fondation pour la Recherche Médicale
(FDM201806006069). M.V. received funding support from
the Fondation pour la Recherche Médicale, grant number
SPF201909009302.
Hanauer SB, Feagan BG, Lichtenstein GR, et al; ACCENT I Study Group. Maintenance infliximab for Crohn’s disease: the ACCENT I randomised trial. Lancet. 2002;359:1541-1549. 10.1016/S0140-6736(02)08512-4
Colombel J-F, Sandborn WJ, Rutgeerts P, et al. Adalimumab for maintenance of clinical response and remission in patients with Crohn’s disease: the CHARM trial. Gastroenterology. 2007;132:52-65. 10.1053/J.GASTRO.2006.11.041
Hässler S, Bachelet D, Duhaze J, et al; ABIRISK consortium Clinicogenomic factors of biotherapy immunogenicity in autoimmune disease: a prospective multicohort study of the ABIRISK consortium. PLoS Med. 2020;17:e1003348. 10.1371/JOURNAL.PMED.1003348
Sands BE, Sandborn WJ, Panaccione R, et al; UNIFI Study Group. Ustekinumab as induction and maintenance therapy for ulcerative colitis. New Engl J Med. 2019;381:1201-1214. 10.1056/nejmoa1900750
Sandborn WJ, Gasink C, Gao L-L, et al; CERTIFI Study Group. Ustekinumab induction and maintenance therapy in refractory Crohn’s disease. New Engl J Med. 2012;367:1519-1528. 10.1056/NEJMoa1203572
Feagan BG, Rutgeerts P, Sands BE, et al; GEMINI 1 Study Group. Vedolizumab as induction and maintenance therapy for ulcerative colitis. New Engl J Med. 2013;369:699-710. 10.1056/NEJMoa1215734
Sandborn WJ, Feagan BG, Rutgeerts P, et al; GEMINI 2 Study Group. Vedolizumab as induction and maintenance therapy for Crohn’s disease. New Engl J Med. 2013;369:711-721. 10.1056/NEJMoa1215739
Binder V, Hendriksen C, Kreiner S. Prognosis in Crohn’s disease—based on results from a regional patient group from the county of Copenhagen. Gut. 1985;26:146-150.
Cosnes J, Nion-Larmurier I, Beaugerie L, Afchain P, Tiret E, Gendre J-P. Impact of the increasing use of immunosuppressants in Crohn’s disease on the need for intestinal surgery. Gut. 2005;54:237-241. 10.1136/gut.2004.045294
Peyrin-Biroulet L, Harmsen WS, Tremaine WJ, Zinsmeister AR, Sandborn WJ, Loftus EV. Surgery in a population-based cohort of Crohn’s disease from Olmsted County, Minnesota (1970–2004). Am J Gastroenterol. 2012;107:1693-1701. 10.1038/ajg.2012.298
Ngollo M, Perez K, Hammoudi N, et al; REMIND Study Group Investigators. Identification of gene expression profiles associated with an increased risk of post-operative recurrence in Crohn’s disease. J Crohns Colitis. 2022;16:1269-1280. 10.1093/ECCO-JCC/JJAC021
Verstockt B, Verstockt S, Dehairs J, et al. Low TREM1 expression in whole blood predicts anti-TNF response in inflammatory bowel disease. EBioMedicine. 2019;40:733-742. 10.1016/J.EBIOM.2019.01.027
West NR, Hegazy AN, Owens BMJ, et al; Oxford IBD Cohort Investigators. Oncostatin M drives intestinal inflammation and predicts response to tumor necrosis factor–neutralizing therapy in patients with inflammatory bowel disease. Nat Med. 2017;23:579-589. 10.1038/NM.4307
Verstockt B, Verstockt S, Creyns B, et al. Mucosal IL13RA2 expression predicts nonresponse to anti-TNF therapy in Crohn’s disease. Aliment Pharmacol Ther. 2019;49:572-581. 10.1111/APT.15126
Auzolle C, Nancey S, Tran-Minh M-L, et al; REMIND Study Group Investigators. Male gender, active smoking and previous intestinal resection are risk factors for post-operative endoscopic recurrence in Crohn’s disease: results from a prospective cohort study. Aliment Pharmacol Ther. 2018;48:924-932. 10.1111/apt.14944
Hammoudi N, Hamoudi S, Bonnereau J, et al. Autologous organoid co-culture model reveals T cell-driven epithelial cell death in Crohn’s Disease. Front Immunol. 2022;13:1008456. 10.3389/FIMMU.2022.1008456
Aebisher D, Bartusik-Aebisher D, Przygórzewska A, Oleś P, Woźnicki P, Kawczyk-Krupka A. Key interleukins in inflammatory bowel disease-a review of recent studies. Int J Mol Sci. 2024;26:121. 10.3390/IJMS26010121
Leibovitzh H, Lee S-H, Raygoza Garay JA, et al; Crohn’s and Colitis Canada (CCC) Genetic, Environmental, Microbial (GEM) Project Research Consortium. Immune response and barrier dysfunction-related proteomic signatures in preclinical phase of Crohn’s disease highlight earliest events of pathogenesis. Gut. 2023;72:1462-1471. 10.1136/GUTJNL-2022-328421
Singh U, Venkataraman C, Singh R, Lillard J Jr. CXCR3 axis: role in inflammatory bowel disease and its therapeutic implication. Endocr Metab Immune Disord Drug Targets. 2007;7:111-123. 10.2174/187153007780832109
Chami B, Yeung AWS, Van Vreden C, King NJC, Bao S. The role of CXCR3 in DSS-induced colitis. PLoS One. 2014;9:e101622. 10.1371/JOURNAL.PONE.0101622
Walshe M, Nayeri S, Ji J, et al. A role for CXCR3 ligands as biomarkers of post-operative Crohn’s disease recurrence. J Crohns Colitis. 2022;16:900-910. 10.1093/ECCO-JCC/JJAB186
Pardo A, Selman M, Kaminski N. Approaching the degradome in idiopathic pulmonary fibrosis. Int J Biochem Cell Biol. 2008;40:1141-1155. 10.1016/J.BIOCEL.2007.11.020
Morris DR, Biros E, Cronin O, Kuivaniemi H, Golledge J. The association of genetic variants of matrix metalloproteinases with abdominal aortic aneurysm: a systematic review and meta-analysis. Heart. 2014;100:295-302. 10.1136/HEARTJNL-2013-304129
Kobayashi K, Arimura Y, Goto A, et al. Therapeutic implications of the specific inhibition of causative matrix metalloproteinases in experimental colitis induced by dextran sulphate sodium. J Pathol. 2006;209:376-383. 10.1002/PATH.1978
Koller FL, Dozier EA, Nam KT, et al. Lack of MMP10 exacerbates experimental colitis and promotes development of inflammation-associated colonic dysplasia. Lab Invest. 2012;92:1749-1759. 10.1038/LABINVEST.2012.141
O’Sullivan S, Gilmer JF, Medina C. Matrix metalloproteinases in inflammatory bowel disease: an update. Mediators Inflamm. 2015;2015:964131. 10.1155/2015/964131
Jongsma MME, Costes LMM, Tindemans I, et al. Serum immune profiling in paediatric Crohn’s disease demonstrates stronger immune modulation with first-line infliximab than conventional therapy and pre-treatment profiles predict clinical response to both treatments. J Crohns Colitis. 2023;17:1262-1277. 10.1093/ECCO-JCC/JJAD049
Colombel J-F, Ungaro RC, Sands BE, et al. Vedolizumab, adalimumab, and methotrexate combination therapy in Crohn’s disease (EXPLORER). Clin Gastroenterol Hepatol. 2024;22:1487-1496.e12. 10.1016/J.CGH.2023.09.010
Ahmed W, Galati J, Kumar A, et al. Dual biologic or small molecule therapy for treatment of inflammatory bowel disease: a systematic review and meta-analysis. Clin Gastroenterol Hepatol. 2022;20:e361–79-e379. 10.1016/J.CGH.2021.03.034
Salomon B, Sudhakar P, Bergemalm D, et al. Characterisation of IBD heterogeneity using serum proteomics: a multicentre study. J Crohns Colitis. 2025;19:jjae169. 10.1093/ECCO-JCC/JJAE169