U. Abou-Rjeileh G.A. Contreras Redox regulation of lipid mobilization in adipose tissues Antioxidants 10 1090 1:CAS:528:DC%2BB3MXitFSlur%2FO 10.3390/antiox10071090 34356323 8301038
S. Agostini F. Houlbrèque T. Biscéré B.P. Harvey J.M. Heitzman R. Takimoto W. Yamazaki M. Milazzo R. Rodolfo-Metalpa Greater mitochondrial energy production provides resistance to ocean acidification in “Winning” hermatypic corals Front Mar Sci 7 600836 10.3389/fmars.2020.600836
D. Alaguarda J. Brajard G. Coulibaly M. Canesi E. Douville F. Le Cornec C. Lelabousse A. Tribollet 54 years of microboring community history explored by machine learning in a massive coral from Mayotte (Indian Ocean) Front Mar Sci 9 899398 10.3389/fmars.2022.899398
F.A. Al-Horani S.M. Al-Moghrabi D. de Beer The mechanism of calcification and its relation to photosynthesis and respiration in the scleractinian coral Galaxea fascicularis Mar Biol 142 419 426 1:CAS:528:DC%2BD3sXht1Clsr4%3D 10.1007/s00227-002-0981-8
D. Allemand C. Ferrier-Pagès P. Furla F. Houlbrèque S. Puverel S. Reynaud É. Tambutté S. Tambutté D. Zoccola Biomineralisation in reef-building corals: from molecular mechanisms to environmental control C R Palevol 3 453 467 10.1016/J.CRPV.2004.07.011
Andersson AJ, Mackenzie FT, Gattuso J-P (2011) Effects of Ocean Acidification on Benthic Processes, Organisms, and Ecosystems, in: Ocean Acidification. Oxford University Press. https://doi.org/10.1093/oso/9780199591091.003.0012
K.R.N. Anthony D.I. Kline G. Diaz-Pulido S. Dove O. Hoegh-Guldberg Ocean acidification causes bleaching and productivity loss in coral reef builders Proc Natl Acad Sci 105 17442 17446 10.1073/pnas.0804478105 18988740 2580748
K.D. Bahr K.S. Rodgers P.L. Jokiel Ocean warming drives decline in coral metabolism while acidification highlights species-specific responses Mar Biol Res 14 924 935 10.1080/17451000.2018.1551616
H.C. Barkley A.L. Cohen D.C. McCorkle Y. Golbuu Mechanisms and thresholds for pH tolerance in Palau corals J Exp Mar Biol Ecol 489 7 14 1:CAS:528:DC%2BC2sXnvVamsg%3D%3D 10.1016/j.jembe.2017.01.003
J. Beardall M. Giordano Ecological implications of microalgal and cyanobacterial CO2 concentrating mechanisms, and their regulation Funct Plant Biol 29 335 1:CAS:528:DC%2BD38XjsVCltL4%3D 10.1071/PP01195 32689480
H.E. Bedwell-Ivers M.S. Koch K.E. Peach L. Joles E. Dutra C. Manfrino The role of in hospite zooxanthellae photophysiology and reef chemistry on elevated pCO2 effects in two branching Caribbean corals: Acropora cervicornis and Porites divaricata ICES J Mar Sci 74 1103 1112 10.1093/icesjms/fsw026
H. Bergschneider G. Muller-parker Nutritional role of two algal symbionts in the temperate sea anemone Anthopleura elegantissima brandt Biol Bull 215 73 88 1:CAS:528:DC%2BD1cXhtFKjurrE 10.2307/25470685 18723639
A. Bertucci É. Tambutté S. Tambutté D. Allemand D. Zoccola Symbiosis-dependent gene expression in coral–dinoflagellate association: cloning and characterization of a P-type H+ -ATPase gene Proceedings of the Royal Society B: Biological Sciences 277 87 95 1:CAS:528:DC%2BC3cXis1WktLs%3D 10.1098/rspb.2009.1266
T. Biscéré M. Zampighi A. Lorrain S. Jurriaans A. Foggo F. Houlbrèque R. Rodolfo-Metalpa High pCO2 promotes coral primary production Biol Lett 15 20180777 1:CAS:528:DC%2BB3cXosVShtA%3D%3D 10.1098/rsbl.2018.0777 31337291 6684997
M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254 1:CAS:528:DC%2BB2MXhsVKisrjM 10.1006/abio.1976.9999 942051
K.M. Brandenburg B. Rost D.B. Van de Waal M. Hoins A. Sluijs Physiological control on carbon isotope fractionation in marine phytoplankton Biogeosciences 19 3305 3315 1:CAS:528:DC%2BB38Xitlyjt7vL 10.5194/bg-19-3305-2022
C. Brownlee pH regulation in symbiotic anemones and corals: a delicate balancing act Proc Natl Acad Sci 106 16541 16542 10.1073/pnas.0909140106 19805333 2757837
Buss H, Timothy P, Chan Karl B, Sluis Neil M, Domigan Christine C, Winterbourn (1997) Protein Carbonyl Measurement by a Sensitive ELISA Method Free Radical Biology and Medicine 23(3):361-366 https://doi.org/10.1016/S0891-5849(97)00104-4
J.C. Bythell B.E. Brown T.B.L. Kirkwood Do reef corals age? Biol Rev 93 1192 1202 10.1111/brv.12391 29282837
M. Canesi É. Douville L. Bordier A. Dapoigny G.E. Coulibaly P. Montagna É. Béraud D. Allemand S. Planes P. Furla E. Gilson S. Roberty D. Zoccola S. Reynaud Porites’ coral calcifying fluid chemistry regulation under normal- and low-pH seawater conditions in Palau Archipelago: Impacts on growth properties Sci Total Environ 911 168552 1:CAS:528:DC%2BB3sXisVCmsrnK 10.1016/j.scitotenv.2023.168552 38007109
R. Chaudhry M. Varacallo Biochemistry Glycolysis StatPearls Publishing, Treasure Island (FL)
Y. Cheng Y. Zheng J.S. VanderGheynst Rapid quantitative analysis of lipids using a colorimetric method in a microplate format Lipids 46 95 103 1:CAS:528:DC%2BC3MXosl2msQ%3D%3D 10.1007/s11745-010-3494-0 21069472
T.D. Clayton R.H. Byrne Spectrophotometric seawater pH measurements: total hydrogen ion concentration scale calibration of m-cresol purple and at-sea results Deep-Sea Res I Oceanogr Res Pap 40 2115 2129 1:CAS:528:DyaK2cXhvF2qsbw%3D 10.1016/0967-0637(93)90048-8
A. Cohen M. Holcomb Why corals care about ocean acidification: uncovering the mechanism Oceanography 22 118 127 10.5670/oceanog.2009.102
A.L. Cohen T.A. McConnaughey Geochemical perspectives on coral mineralization Rev Mineral Geochem 54 151 187 1:CAS:528:DC%2BD2cXktVCmtg%3D%3D 10.2113/0540151
A.L. Cohen D.C. McCorkle S. De Putron G.A. Gaetani K.A. Rose Morphological and compositional changes in the skeletons of new coral recruits reared in acidified seawater: insights into the biomineralization response to ocean acidification Geochem, Geophys, Geosyst 10.1029/2009GC002411
S. Comeau R.C. Carpenter Y. Nojiri H.M. Putnam K. Sakai P.J. Edmunds Pacific-wide contrast highlights resistance of reef calcifiers to ocean acidification Proceedings of the Royal Society b: Biological Sciences 281 20141339 1:CAS:528:DC%2BC2cXitFCmtbjK 10.1098/rspb.2014.1339 4123712
S. Comeau P.J. Edmunds N.B. Spindel R.C. Carpenter Fast coral reef calcifiers are more sensitive to ocean acidification in short-term laboratory incubations Limnol Oceanogr 59 1081 1091 1:CAS:528:DC%2BC2cXhtVKjt7vI 10.4319/lo.2014.59.3.1081
S. Comeau C.E. Cornwall T.M. DeCarlo S.S. Doo R.C. Carpenter M.T. McCulloch Resistance to ocean acidification in coral reef taxa is not gained by acclimatization Nat Clim Chang 9 477 483 1:CAS:528:DC%2BC1MXhtVCrsbrN 10.1038/s41558-019-0486-9
S. Comeau C.E. Cornwall T. Shlesinger M. Hoogenboom R. Mana M.T. McCulloch R. Rodolfo-Metalpa pH variability at volcanic CO2 seeps regulates coral calcifying fluid chemistry Glob Chang Biol 28 2751 2763 10.1111/gcb.16093 35119159
I. Coronado M. Fine F.R. Bosellini J. Stolarski Impact of ocean acidification on crystallographic vital effect of the coral skeleton Nat Commun 10 2896 1:CAS:528:DC%2BC1MXhtlWisbrI 10.1038/s41467-019-10833-6 31263108 6603003
G. Coward A. Lawrence N. Ripley V. Brown M. Sudek E. Brown I. Moffitt B. Fuiava B. Vargas-Ángel A new record for a massive Porites colony at Ta’u Island American Samoa Sci Rep 10 21359 1:CAS:528:DC%2BB3cXisFCgs7jN 10.1038/s41598-020-77776-7 33288847
J.-P. Cuif Y. Dauphin Microstructural and physico-chemical characterization of ‘centers of calcification’ in septa of some Recent scleractinian corals Palaontol Z 72 257 269 10.1007/BF02988357
J.P. D’Olivo G. Ellwood T.M. DeCarlo M.T. McCulloch Deconvolving the long-term impacts of ocean acidification and warming on coral biomineralisation Earth Planet Sci Lett 526 10.1016/J.EPSL.2019.115785 115785
P.S. Davies Effect of daylight variations on the energy budgets of shallow-water corals Mar Biol 108 137 144 10.1007/BF01313481
S.W. Davies A. Marchetti J.B. Ries K.D. Castillo Thermal and pCO2 stress elicit divergent transcriptomic responses in a resilient coral Front Mar Sci 3 112 10.3389/fmars.2016.00112
S.W. Davies J.B. Ries A. Marchetti K.D. Castillo Symbiodinium functional diversity in the coral siderastrea siderea is influenced by thermal stress and reef environment, but not ocean acidification Front Mar Sci 5 150 10.3389/fmars.2018.00150
R.J. DeBerardinis N.S. Chandel We need to talk about the Warburg effect Nat Metab 2 127 129 10.1038/s42255-020-0172-2 32694689
T.M. DeCarlo A.L. Cohen H.C. Barkley Q. Cobban C. Young K.E. Shamberger R.E. Brainard Y. Golbuu Coral macrobioerosion is accelerated by ocean acidification and nutrients Geology 43 7 10 1:CAS:528:DC%2BC2MXjt1GnsLo%3D 10.1130/G36147.1
T.M. DeCarlo J.P. D’Olivo T. Foster M. Holcomb T. Becker M.T. McCulloch Coral calcifying fluid aragonite saturation states derived from Raman spectroscopy Biogeosciences 14 5253 5269 1:CAS:528:DC%2BC1cXisFKktrjP 10.5194/bg-14-5253-2017
Dellisanti W, Seveso D, Kar-Hei Fang J (2022) Nutrition of Corals and Their Trophic Plasticity under Future Environmental Conditions. In: Corals-Habitat Formers in the Anthropocene. IntechOpen. https://doi.org/10.5772/intechopen.104612
A.G. Dickson Thermodynamics of the dissociation of boric acid in synthetic seawater from 273.15 to 318.15 K. Deep sea research part A Oceanogr Res Pap 37 755 766 1:CAS:528:DyaK3MXivFKmug%3D%3D 10.1016/0198-0149(90)90004-F
A.G. Dickson F.J. Millero A comparison of the equilibrium constants for the dissociation of carbonic acid in seawater media. Deep sea research part A Oceanogr Res Pap 34 1733 1743 1:CAS:528:DyaL1cXotFGjsg%3D%3D 10.1016/0198-0149(87)90021-5
A.G. Dickson C.L. Sabine Christian J. Robert Guide to best practices for ocean CO2 measurements North Pacific Marine Science Organization
P.J. Edmunds Zooplanktivory ameliorates the effects of ocean acidification on the reef coral Porites spp Limnol Oceanogr 56 2402 2410 1:CAS:528:DC%2BC3MXhs1yntLrM 10.4319/lo.2011.56.6.2402
P.J. Edmunds D. Brown V. Moriarty Interactive effects of ocean acidification and temperature on two scleractinian corals from Moorea, French Polynesia Glob Chang Biol 18 2173 2183 10.1111/j.1365-2486.2012.02695.x
Erez J, Reynaud S, Silverman J, Schneider K, Allemand D (2011) Coral calcification under ocean acidification and global change. In: Coral Reefs: An Ecosystem in Transition. Springer Netherlands, pp. 151–176. https://doi.org/10.1007/978-94-007-0114-4_10
K.E. Fabricius J.C. Mieog P.L. Colin D. Idip M.J.H. Van Oppen Identity and diversity of coral endosymbionts (zooxanthellae) from three Palauan reefs with contrasting bleaching, temperature and shading histories Mol Ecol 13 2445 2458 1:CAS:528:DC%2BD2cXmsl2ru7Y%3D 10.1111/j.1365-294X.2004.02230.x 15245416
K.E. Fabricius C. Langdon S. Uthicke C. Humphrey S. Noonan G. De’ath R. Okazaki N. Muehllehner M.S. Glas J.M. Lough Losers and winners in coral reefs acclimatized to elevated carbon dioxide concentrations Nat Clim Chang 1 165 169 1:CAS:528:DC%2BC3MXmvFOktrg%3D 10.1038/nclimate1122
Z.H. Forsman R. Ritson-Williams K.H. Tisthammer I.S.S. Knapp R.J. Toonen Host-symbiont coevolution, cryptic structure, and bleaching susceptibility, in a coral species complex (Scleractinia; Poritidae) Sci Rep 10 16995 1:CAS:528:DC%2BB3cXitVOrtbvI 10.1038/s41598-020-73501-6 33046719 7550562
T. Fujii Y. Tanaka K. Maki N. Saotome N. Morimoto A. Watanabe T. Miyajima Organic carbon and nitrogen isoscapes of reef corals and algal symbionts: relative influences of environmental gradients and heterotrophy Microorganisms 8 1 26 1:CAS:528:DC%2BB3cXisVSitb7E 10.3390/microorganisms8081221
P. Furla D. Allemand M.-N. Orsenigo Involvement of H+ -ATPase and carbonic anhydrase in inorganic carbon uptake for endosymbiont photosynthesis Am J Physiol-Regul, Integr Comp Physiol 278 R870 R881 1:CAS:528:DC%2BD3cXislSksLw%3D 10.1152/ajpregu.2000.278.4.R870 10749774
P. Furla I. Galgani I. Durand D. Allemand Sources and mechanisms of inorganic carbon transport for coral calcification and photosynthesis J Exp Biol 203 22 3445 3457 1:CAS:528:DC%2BD3MXlvFKr 10.1242/jeb.203.22.3445 11044383
P. Furla D. Allemand J.M. Shick C. Ferrier-Pagès S. Richier A. Plantivaux P.L. Merle S. Tambutté The symbiotic anthozoan: a physiological chimera between alga and animal Integr Comp Biol 45 595 604 1:CAS:528:DC%2BD2MXhtFeks7zM 10.1093/icb/45.4.595 21676806
J.-P. Gattuso D. Allemand M. Frankignoulle Photosynthesis and calcification at cellular, organismal and community levels in coral reefs: a review on interactions and control by carbonate chemistry Am Zool 39 160 183 1:CAS:528:DyaK1MXisVSlurc%3D 10.1093/icb/39.1.160
Gattuso J-P, Hansson L (2011) Acidification: background and history. In: Ocean acidification. Oxford University Press. https://doi.org/10.1093/oso/9780199591091.003.0006
Y. Golbuu M. Gouezo H. Kurihara L. Rehm E. Wolanski Long-term isolation and local adaptation in Palau’s Nikko Bay help corals thrive in acidic waters Coral Reefs 35 909 918 10.1007/s00338-016-1457-5
González-Delgado S, Hernández JC (2018) The Importance of Natural Acidified Systems in the Study of Ocean Acidification: What Have We Learned? pp. 57–99. https://doi.org/10.1016/bs.amb.2018.08.001
N. Gruber D. Clement B.R. Carter R.A. Feely S. van Heuven M. Hoppema M. Ishii R.M. Key A. Kozyr S.K. Lauvset C. Lo Monaco J.T. Mathis A. Murata A. Olsen F.F. Perez C.L. Sabine T. Tanhua R. Wanninkhof The oceanic sink for anthropogenic CO2 from 1994 to 2007 Science (1979) 363 1193 1199 1:CAS:528:DC%2BC1MXks1yrsrk%3D 10.1126/science.aau5153
W. Guo R. Bokade A.L. Cohen N.R. Mollica M. Leung R.E. Brainard Ocean acidification has impacted coral growth on the Great Barrier Reef Geophys Res Lett 47 e2019GL086761 1:CAS:528:DC%2BB3cXitVGgsbrO 10.1029/2019GL086761
Heinrich Friedrich, Link Beschreibung der Naturalien-Sammlung der Universität zu Rostock Gedruckt bey Adlers Erben Rostock
R.C. Highsmith Coral growth rates and environmental control of density banding J Exp Mar Biol Ecol 37 105 125 10.1016/0022-0981(79)90089-3
T.S. Hill M.O. Hoogenboom The indirect effects of ocean acidification on corals and coral communities Coral Reefs 10.1007/s00338-022-02286-z
K.R. Hinga M.A. Arthur M.E.Q. Pilson D. Whitaker Carbon isotope fractionation by marine phytoplankton in culture: the effects of CO2 concentration, p H, temperature, and species Global Biogeochem Cycles 8 91 102 1:CAS:528:DyaK2cXisl2hu7g%3D 10.1029/93GB03393
O. Hoegh-Guldberg A method for determining the surface area of corals Coral Reefs 7 113 116 10.1007/BF00300970
M. Holcomb A.A. Venn E. Tambutté S. Tambutté D. Allemand J. Trotter M. McCulloch Coral calcifying fluid pH dictates response to ocean acidification Sci Rep 4 5207 1:CAS:528:DC%2BC2MXktlOit78%3D 10.1038/srep05207 24903088 4047535
R. Horwitz E.M. Borell R. Yam A. Shemesh M. Fine Natural high pCO2 increases autotrophy in Anemonia viridis (Anthozoa) as revealed from stable isotope (C, N) analysis Sci Rep 5 8779 1:CAS:528:DC%2BC2MXhtFKhtbfJ 10.1038/srep08779 25739995 4350107
M. Inoue T. Nakamura Y. Tanaka A. Suzuki Y. Yokoyama H. Kawahata K. Sakai N. Gussone A simple role of coral-algal symbiosis in coral calcification based on multiple geochemical tracers Geochim Cosmochim Acta 235 76 88 1:CAS:528:DC%2BC1cXhtVSgtL3N 10.1016/j.gca.2018.05.016
IPCC (2018) Global Warming of 1.5 °C. An IPCC Special Report on the impacts of global warming of 1.5 °C above pre-industrial levels and related global greenhouse gas emission pathways, in the context of strengthening the global response to the threat of climate change, sustainable development, and efforts to eradicate poverty [Masson-Delmotte V, Zhai P, Pörtner H-O, Roberts D, Skea J, Shukla PR, Pirani A, Moufouma-Okia W, Péan C, Pidcock R, Connors S, Matthews JBR, Chen Y, Zhou X, Gomis MI, Lonnoy E, Maycock T, Tignor M, and Waterfield T (eds.)].
IPCC (2019) Summary for Policymakers. In: IPCC Special Report on the Ocean and Cryosphere in a Changing Climate [Pörtner H-O, Roberts DC, Masson-Delmotte V, Zhai P, Tignor M, Poloczanska E, Mintenbeck K, Alegría A, Nicolai M, Okem A, Petzold J, Rama B, Weyer NM. Cambridge University Press, Cambridge, UK and New York, NY, USA, pp. 3–35. https://doi.org/10.1017/9781009157964.001.
Y. Isa N. Ikehara K. Yamazato Evidence for the occurrence of Ca2+-dependent adenosine triphosphatase in a hermatypic coral, Acropora hebes (Dana) Sesoko Mar Sci Lab Tech Rep 7 19 25
P.L. Jokiel Ocean acidification and control of reef coral calcification by boundary layer limitation of proton flux Bull Mar Sci 87 639 657 10.5343/bms.2010.1107
P. Kaniewska P.R. Campbell D.I. Kline M. Rodriguez-Lanetty D.J. Miller S. Dove O. Hoegh-Guldberg Major cellular and physiological impacts of ocean acidification on a reef building coral PLoS ONE 7 e34659 1:CAS:528:DC%2BC38XlvF2msrw%3D 10.1371/journal.pone.0034659 22509341 3324498
M. Koch G. Bowes C. Ross X. Zhang Climate change and ocean acidification effects on seagrasses and marine macroalgae Glob Chang Biol 19 103 132 10.1111/j.1365-2486.2012.02791.x 23504724
K.J. Kroeker R.L. Kordas R. Crim I.E. Hendriks L. Ramajo G.S. Singh C.M. Duarte J. Gattuso Impacts of ocean acidification on marine organisms: quantifying sensitivities and interaction with warming Glob Chang Biol 19 1884 1896 10.1111/gcb.12179 23505245 3664023
T. Krueger N. Horwitz J. Bodin M.E. Giovani S. Escrig A. Meibom M. Fine Common reef-building coral in the northern red sea resistant to elevated temperature and acidification R Soc Open Sci 4 170038 1:CAS:528:DC%2BC1cXitlWisb7P 10.1098/rsos.170038 28573008 5451809
T. Krueger J. Bodin N. Horwitz C. Loussert-Fonta A. Sakr S. Escrig M. Fine A. Meibom Temperature and feeding induce tissue level changes in autotrophic and heterotrophic nutrient allocation in the coral symbiosis—A NanoSIMS study Sci Rep 8 12710 1:CAS:528:DC%2BC1MXjs1OnsA%3D%3D 10.1038/s41598-018-31094-1 30140050 6107511
H. Kurihara A. Watanabe A. Tsugi et al. Potential local adaptation of corals at acidified and warmed Nikko Bay Palau Sci Rep 11 11192 1:CAS:528:DC%2BB3MXhsFOhtLrN 10.1038/s41598-021-90614-8 34045589
T.-Y. Lee Lactate: a multifunctional signaling molecule Yeungnam Univ J Med 38 183 193 1:CAS:528:DC%2BB3MXitlegtrvE 10.12701/yujm.2020.00892 33596629 8225492
M.P. Lesser M. Slattery K.J. Macartney Using stable isotope analyses to assess the trophic ecology of scleractinian corals Oceans 3 527 546 10.3390/oceans3040035
J.Y.S. Leung S. Zhang S.D. Connell Is ocean acidification really a threat to marine calcifiers? a systematic review and meta-analysis of 980+ studies spanning two decades Small 10.1002/smll.202107407 35934837
E. Lewis D. Wallace L.J. Allison Program developed for CO2 system calculations Oak Ridge, TN 10.2172/639712
M.V. Liberti J.W. Locasale The warburg effect: how does it benefit cancer cells? Trends Biochem Sci 10.1016/j.tibs.2015.12.001 29482833 4783224
B.K. Linsley R.G. Messier R.B. Dunbar Assessing between-colony oxygen isotope variability in the coral Porites lobata at Clipperton Atoll Coral Reefs 18 13 27 10.1007/s003380050148
L.B. Linsmayer D.D. Deheyn L. Tomanek M. Tresguerres Dynamic regulation of coral energy metabolism throughout the diel cycle Sci Rep 10 19881 1:CAS:528:DC%2BB3cXitlOrtb%2FL 10.1038/s41598-020-76828-2 33199772 7669893
Y. Loya K. Sakai K. Yamazato Y. Nakano H. Sambali R. van Woesik Coral bleaching: the winners and the losers Ecol Lett 4 122 131 10.1046/j.1461-0248.2001.00203.x
F. Marubini C. Ferrier-Pages J.P. Cuif Suppression of skeletal growth in scleractinian corals by decreasing ambient carbonate-ion concentration: a cross-family comparison Proceedings of the Royal Society B: Biological Sciences 270 179 184 10.1098/rspb.2002.2212 1691223
Marcela, Herrera Yi Jin, Liew Alexander, Venn Eric, Tambutté Didier, Zoccola Sylvie, Tambutté Guoxin, Cui Manuel, Aranda (2021) New Insights From Transcriptomic Data Reveal Differential Effects of CO2 Acidification Stress on Photosynthesis of an Endosymbiotic Dinoflagellate in hospite Frontiers in Microbiology https://doi.org/10.3389/fmicb.2021.666510
T. Masuko A. Minami N. Iwasaki T. Majima S.-I. Nishimura Y.C. Lee Carbohydrate analysis by a phenol–sulfuric acid method in microplate format Anal Biochem 339 69 72 1:CAS:528:DC%2BD2MXit1eqsL8%3D 10.1016/j.ab.2004.12.001 15766712
M. McCulloch J. Falter J. Trotter P. Montagna Coral resilience to ocean acidification and global warming through pH up-regulation Nat Clim Chang 2 623 627 1:CAS:528:DC%2BC38XhtV2isLjM 10.1038/nclimate1473
Mclachlan R, Munoz-Garcia A, G Grottoli A (2020). Extraction of Total Soluble Lipid from Ground Coral Samples v1. https://doi.org/10.17504/protocols.io.bc4qiyvw
C. Mehrbach C.H. Culberson J.E. Hawley R.M. Pytkowicx Measurement of the apparent dissociation constants of carbonic acid in seawater at atmospheric pressure 1 Limnol Oceanogr 18 6 897 907 1:CAS:528:DyaE2cXhtFansLk%3D 10.4319/lo.1973.18.6.0897
N.R. Mollica W. Guo A.L. Cohen K.-F. Huang G.L. Foster H.K. Donald A.R. Solow Ocean acidification affects coral growth by reducing skeletal density Proc Natl Acad Sci 115 1754 1759 1:CAS:528:DC%2BC1cXitVamsL7L 10.1073/pnas.1712806115 29378969 5828584
W.G. Mook J.C. Bommerson W.H. Staverman Carbon isotope fractionation between dissolved bicarbonate and gaseous carbon dioxide Earth Planet Sci Lett 22 169 176 1:CAS:528:DyaE2cXksFCiur0%3D 10.1016/0012-821X(74)90078-8
A. Moya L. Huisman E.E. Ball D.C. Hayward L.C. Grasso C.M. Chua H.N. Woo J.-P. Gattuso S. Forêt D.J. Miller Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2 -driven acidification during the initiation of calcification Mol Ecol 21 2440 2454 1:CAS:528:DC%2BC38XhtVeitrvK 10.1111/j.1365-294X.2012.05554.x 22490231
A. Mucci The solubility of calcite and aragonite in seawater at various salinities, temperatures, and one atmosphere total pressure Am J Sci 283 780 799 1:CAS:528:DyaL3sXls1elsb8%3D 10.2475/ajs.283.7.780
Mullarky E, Cantley LC (2015) Diverting Glycolysis to Combat Oxidative Stress. In: Innovative Medicine. Springer Japan, pp. 3–23. https://doi.org/10.1007/978-4-431-55651-0_1
J.W.A. Murphy R.H. Richmond Changes to coral health and metabolic activity under oxygen deprivation PeerJ 4 e1956 1:CAS:528:DC%2BC1cXmsVKksrs%3D 10.7717/peerj.1956 27114888 4841221
L. Muscatine J.W. Porter I.R. Kaplan Resource partitioning by reef corals as from stable isotope composition* I. 513C of zooxanthellae and animal tissue vs depth determined Marine Biol 100 2 185 193 10.1007/BF00391957
Muscatine L, Falkowski PG, Porter JW, Dubinsky Z (1984) Fate of Photosynthetic Fixed Carbon in Light- and Shade-Adapted Colonies of the Symbiotic Coral Stylophora pistillata.
Muscatine L (1990) The role of symbiotic algae in carbon and energy flux in reef corals. Coral reefs.
Y.M.A. Naguib A fluorometric method for measurement of oxygen radical-scavenging activity of water-soluble antioxidants Anal Biochem 284 93 98 1:CAS:528:DC%2BD3cXlsVGqtr4%3D 10.1006/abio.2000.4691 10933861
S. Nahon N.B. Richoux J. Kolasinski M. Desmalades C. Ferrier Pages G. Lecellier S. Planes V. Berteaux Lecellier Spatial and temporal variations in stable carbon (δ13C) and nitrogen (δ15N) isotopic composition of symbiotic scleractinian corals PLoS ONE 8 1:CAS:528:DC%2BC2cXltl2qsr4%3D 10.1371/journal.pone.0081247 24312542 3846910 e81247
J.C. Orr V.J. Fabry O. Aumont L. Bopp S.C. Doney R.A. Feely A. Gnanadesikan N. Gruber A. Ishida F. Joos R.M. Key K. Lindsay E. Maier-Reimer R. Matear P. Monfray A. Mouchet R.G. Najjar G.-K. Plattner K.B. Rodgers C.L. Sabine J.L. Sarmiento R. Schlitzer R.D. Slater I.J. Totterdell M.-F. Weirig Y. Yamanaka A. Yool Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms Nature 437 681 686 1:CAS:528:DC%2BD2MXhtVCjsL%2FE 10.1038/nature04095 16193043
J.M. Pandolfi S.R. Connolly D.J. Marshall A.L. Cohen Projecting coral reef futures under global warming and ocean acidification Science 333 418 422 1:CAS:528:DC%2BC3MXovF2murY%3D 10.1126/science.1204794 21778392
J. Pätzold Growth rhythms recorded in stable isotopes and density bands in the reef coral Porites lobata (Cebu, Philippines) Coral Reefs 3 87 90 10.1007/BF00263758
S. Planes D. Allemand S. Agostini B. Banaigs E. Boissin E. Boss G. Bourdin C. Bowler E. Douville J.M. Flores D. Forcioli P. Furla P.E. Galand J.-F. Ghiglione E. Gilson F. Lombard C. Moulin S. Pesant J. Poulain S. Reynaud S. Romac M.B. Sullivan S. Sunagawa O.P. Thomas R. Troublé C. de Vargas R. Vega Thurber C.R. Voolstra P. Wincker D. Zoccola The Tara Pacific expedition—A pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean PLoS Biol 17 1:CAS:528:DC%2BC1MXit1elu7zN 10.1371/journal.pbio.3000483 31545807 6776362 e3000483
Plichon K, Furla P (2024a) Total carbohydrate content for coral samples. protocols.io https://protocols.io/view/total-carbohydrate-content-for-coral-samples-cx56xq9e, https://doi.org/10.17504/protocols.io.36wgq3j4xlk5/v1
Plichon K, Furla P (2024b) Total lipid content analysis for coral samples. protocols.io https://protocols.io/view/total-lipid-content-analysis-for-coral-samples-cxwrxpd6, https://doi.org/10.17504/protocols.io.81wgbx681lpk/v1
Plichon K, Tredez Marion, Roberty S, Canesi M, Beraud E, Douville E, Zoccola D, Gilson E, Reynaud S, Furla P (2024). Coping with ocean acidification: metabolic shifts in Porites corals from the Palau Archipelago. Zenodo. https://doi.org/10.5281/zenodo.14509258
J.T. Price R.H. McLachlan C.P. Jury R.J. Toonen A.G. Grottoli Isotopic approaches to estimating the contribution of heterotrophic sources to Hawaiian corals Limnol Oceanogr 66 2393 2407 1:CAS:528:DC%2BB3MXisV2qtb7I 10.1002/lno.11760
S. Reynaud C. Ferrier-Pagès R. Sambrotto A. Juillet-Leclerc J. Jaubert J. Gattuso Effect of feeding on the carbon and oxygen isotopic composition in the tissues and skeleton of the zooxanthellate coral Stylophora pistillata Mar Ecol Prog Ser 238 81 89 10.3354/meps238081
J.B. Ries A physicochemical framework for interpreting the biological calcification response to CO2-induced ocean acidification Geochim Cosmochim Acta 75 4053 4064 1:CAS:528:DC%2BC3MXns1Cnu7c%3D 10.1016/j.gca.2011.04.025
H.E. Rivera A.L. Cohen J.R. Thompson et al. Palau’s warmest reefs harbor thermally tolerant corals that thrive across different habitats Commun Biol 5 1394 10.1038/s42003-022-04315-7 36543929 9772186
E.B. Rivest G.E. Hofmann Responses of the metabolism of the larvae of Pocillopora damicornis to ocean acidification and warming PLoS ONE 9 e96172 10.1371/journal.pone.0096172 24769774 4000220
R.A. Robergs F. Ghiasvand D. Parker D.P. Biochemistry Biochemistry of exercise-induced metabolic acidosis Am J Physiol Regul Integr Comp Physiol 10.1152/ajpregu.00114.2004 15308499
R. Rodolfo-Metalpa F. Houlbrèque É. Tambutté F. Boisson C. Baggini F.P. Patti R. Jeffree M. Fine A. Foggo J.-P. Gattuso J.M. Hall-Spencer Coral and mollusc resistance to ocean acidification adversely affected by warming Nat Clim Chang 1 308 312 1:CAS:528:DC%2BC3MXhtVyltb3J 10.1038/nclimate1200
C.A. Roeske M.H. O’Leary Carbon isotope effect on carboxylation of ribulose bisphosphate catalyzed by ribulose bisphosphate carboxylase from Rhodospirillum rubrum Biochemistry 24 1603 1607 1:CAS:528:DyaL2MXhs1artbw%3D 10.1021/bi00328a005 3924094
C. Sassaman C.P. Mangum Relationship between aerobic and anaerobic metabolism in estuarine anemones Comp Biochem Physiol A Physiol 44 1313 1319 1:CAS:528:DyaE3sXhtVymsrw%3D 10.1016/0300-9629(73)90270-3
K.E.F. Shamberger A.L. Cohen Y. Golbuu D.C. McCorkle S.J. Lentz H.C. Barkley Diverse coral communities in naturally acidified waters of a Western Pacific reef Geophys Res Lett 41 499 504 10.1002/2013GL058489
A. Smith N. Cook K. Cook R. Brown R. Woodgett J. Veron V. Saylor Field measurements of a massive porites coral at goolboodi (Orpheus Island) Great Barrier Reef Sci Rep 11 15334 1:CAS:528:DC%2BB3MXhvVCls7zI 10.1038/s41598-021-94818-w 34413333
C. Spalding S. Finnegan W.W. Fischer Energetic costs of calcification under ocean acidification Global Biogeochem Cycles 31 866 877 1:CAS:528:DC%2BC2sXotFyqsLo%3D 10.1002/2016GB005597
M. Stat X. Pochon R. Cowie R. Gates Specificity in communities of Symbiodinium in corals from Johnston Atoll Mar Ecol Prog Ser 386 83 96 1:CAS:528:DC%2BD1MXhtVClu7bI 10.3354/meps08080
J. Stimson R.A. Kinzie The temporal pattern and rate of release of zooxanthellae from the reef coral Pocillopora damicornis (Linnaeus) under nitrogen-enrichment and control conditions J Exp Mar Biol Ecol 153 63 74 10.1016/S0022-0981(05)80006-1
D.J. Suggett J.M. Hall-Spencer R. Rodolfo-Metalpa T.G. Boatman R. Payton D. Tye Pettay V.R. Johnson M.E. Warner T. Lawson Sea anemones may thrive in a high CO2 world Glob Chang Biol 18 3015 3025 10.1111/j.1365-2486.2012.02767.x 28741826
Y. Sun H. Sheng N. Rädecker Y. Lan H. Tong L. Huang L. Jiang G. Diaz-Pulido B. Zou Y. Zhang S.-J. Kao P.-Y. Qian H. Huang Symbiodiniaceae algal symbionts of Pocillopora damicornis larvae provide more carbon to their coral host under elevated levels of acidification and temperature Commun Biol 7 1528 1:CAS:528:DC%2BB2cXis1SjtbzF 10.1038/s42003-024-07203-4 39558079 11573989
E. Tambutté D. Allemand D. Zoccola A. Meibom S. Lotto N. Caminiti S. Tambutté Observations of the tissue-skeleton interface in the scleractinian coral Stylophora pistillata Coral Reefs 26 517 529 10.1007/s00338-007-0263-5
S. Tambutté M. Holcomb C. Ferrier-Pagès S. Reynaud É. Tambutté D. Zoccola D. Allemand Coral biomineralization: From the gene to the environment J Exp Mar Biol Ecol 408 58 78 10.1016/j.jembe.2011.07.026
E. Tambutté A.A. Venn M. Holcomb N. Segonds N. Techer D. Zoccola D. Allemand S. Tambutté Morphological plasticity of the coral skeleton under CO2-driven seawater acidification Nat Commun 6 7368 1:CAS:528:DC%2BC2MXhtF2ksbjN 10.1038/ncomms8368 26067341
A. Tribollet C. Godinot M. Atkinson C. Langdon Effects of elevated pCO2 on dissolution of coral carbonates by microbial euendoliths Global Biogeochem Cycles 10.1029/2008GB003286
A. Tribollet A. Chauvin P. Cuet Carbonate dissolution by reef microbial borers: a biogeological process producing alkalinity under different pCO2 conditions Facies 65 9 10.1007/s10347-018-0548-x
van Woesik Peter R, Houk Adelle L, Isechal Jacques W, Steven I, Yimnang V, Golbuu (2012) Climate–change refugia in the sheltered bays of Palau: analogs of future reefs. Abstract Ecology and Evolution 2 (10): 2474–2484. https://doi.org/10.1002/ece3.2012.2
A. Venn E. Tambutté M. Holcomb D. Allemand S. Tambutté Live Tissue imaging shows reef corals elevate pH under their calcifying tissue relative to seawater PLoS ONE 6 1:CAS:528:DC%2BC3MXntVWqsbw%3D 10.1371/journal.pone.0020013 21637757 3103511 e20013
A.A. Venn E. Tambutté N. Caminiti-Segonds N. Techer D. Allemand S. Tambutté Effects of light and darkness on pH regulation in three coral species exposed to seawater acidification Sci Rep 9 2201 1:CAS:528:DC%2BC1MXnsleksLo%3D 10.1038/s41598-018-38168-0 30778093 6379376
A.A. Venn E. Tambutté S. Comeau S. Tambutté Proton gradients across the coral calcifying cell layer: effects of light, ocean acidification and carbonate chemistry Front Mar Sci 9 973908 10.3389/fmars.2022.973908
P. Ventura M.D. Jarrold P.L. Merle S. Barnay-Verdier T. Zamoum R. Rodolfo-Metalpa P. Calosi P. Furla Resilience to ocean acidification: decreased carbonic anhydrase activity in sea anemones under high pCO2 conditions Mar Ecol Prog Ser 559 257 263 1:CAS:528:DC%2BC1cXht1Wnur4%3D 10.3354/meps11916
J. Vidal-Dupiol D. Zoccola E. Tambutté C. Grunau C. Cosseau K.M. Smith M. Freitag N.M. Dheilly D. Allemand S. Tambutté Genes related to ion-transport and energy production are upregulated in response to CO2-driven pH decrease in corals: new insights from transcriptome analysis PLoS ONE 8 e58652 1:CAS:528:DC%2BC3sXlvVOqu7w%3D 10.1371/journal.pone.0058652 23544045 3609761
C.B. Wall T.-Y. Fan P.J. Edmunds Ocean acidification has no effect on thermal bleaching in the coral Seriatopora caliendrum Coral Reefs 33 119 130 10.1007/s00338-013-1085-2
M. Wall J. Fietzke G.M. Schmidt A. Fink L.C. Hofmann D. de Beer K.E. Fabricius Internal pH regulation facilitates in situ long-term acclimation of massive corals to end-of-century carbon dioxide conditions Sci Rep 6 30688 1:CAS:528:DC%2BC28XhtlShu7zJ 10.1038/srep30688 27477963 4967918
J.-T. Wang A.E. Douglas Nitrogen recycling or nitrogen conservation in an alga-invertebrate symbiosis? J Exp Biol 201 2445 2453 10.1242/jeb.201.16.2445 9679106
O. Warburg The metabolism of carcinoma cells J Cancer Res 9 148 163 1:CAS:528:DyaB2MXitVKltg%3D%3D 10.1158/jcr.1925.148
O. Warburg S. Minami Versuche an überlebendem carcinom-gewebe Klin Wochenschr 2 776 777 10.1007/BF01712130
V.M. Weis G.J. Smith L. Muscatine A “CO2 supply” mechanism in zooxanthellate cnidarians: role of carbonic anhydrase Marine Biol 100 2 195 202 1:CAS:528:DyaL1MXhvV2ltb8%3D 10.1007/BF00391958
D. Zoccola E. Tambutté F. Sénégas-Balas J.-F. Michiels J.-P. Failla J. Jaubert D. Allemand Cloning of a calcium channel α1 subunit from the reef-building coral, Stylophora pistillata Gene 227 157 167 1:CAS:528:DyaK1MXhs1ektbg%3D 10.1016/S0378-1119(98)00602-7 10023047
D. Zoccola E. Tambutté E. Kulhanek S. Puverel J.-C. Scimeca D. Allemand S. Tambutté Molecular cloning and localization of a PMCA P-type calcium ATPase from the coral Stylophora pistillata Biochimica Et Biophysica Acta (BBA)-Biomembranes 1663 117 126 1:CAS:528:DC%2BD2cXkt1Smt7o%3D 10.1016/j.bbamem.2004.02.010 15157614
D. Zoccola A. Innocenti A. Bertucci E. Tambutté C.T. Supuran S. Tambutté Coral carbonic anhydrases: regulation by ocean acidification Mar Drugs 14 109 1:CAS:528:DC%2BC2sXhtlyksLfI 10.3390/md14060109 27271641 4926068
Zamoum T, Furla P (2012) Symbiodinium isolation by NaOH treatment Summary Journal of Experimental Biology https://doi.org/10.1242/jeb.074955