Article (Scientific journals)
How to minimize the annotation effort in aerial wildlife surveys
May, Giacomo; Dalsasso, Emanuele; Delplanque, Alexandre et al.
2025In Ecological Informatics, 91, p. 103387
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Keywords :
Aerial wildlife censuses; Annotation effort; Density estimation; Object detection; Object localization; Point annotations; Pseudo labels; Ecology, Evolution, Behavior and Systematics; Modeling and Simulation; Ecology; Ecological Modeling; Computer Science Applications; Computational Theory and Mathematics; Applied Mathematics
Abstract :
[en] Aircraft-based monitoring of wildlife is a popular way among conservation practitioners to obtain animal population counts over large areas. Nowadays, these aerial censuses are becoming increasingly scalable due to the advent of drone technology, which is frequently combined with deep learning-based image recognition. Yet, the annotation burden associated with training deep learning architectures remains a problem especially for commonly used bounding box detection models. Point-based density estimation- and localization models are cheaper to train, and often work better when the aerial imagery is recorded at an oblique angle. Beyond this, though, there currently is little consensus about which strategy to use for what kind of data. In this work, we address this knowledge gap and evaluate modifications to a state-of-the-art detection model (YOLOv8) that minimize labeling efforts by enabling it to work on point-annotated images. We study the effect of these adjustments on detection accuracy and extensively compare them to a localization architecture on four datasets consisting of nadir and oblique images. The goal of this paper is to offer wildlife conservationists practical advice on which of the recently proposed deep learning architectures to use given the properties of their images, as well as on the data properties that will maximize model performance independently of the architecture. We find that counting accuracy can largely be maintained at reduced annotation effort, that object detection technology outperforms the localization approach on nadir images, and that it shows competitive performance in the oblique setting. The images used to obtain the results presented in this paper can be found on Zenodo for all publicly available datasets, as well as all code necessary to reproduce our results was uploaded to GitHub.
Disciplines :
Life sciences: Multidisciplinary, general & others
Computer science
Author, co-author :
May, Giacomo ;  Environmental Computational Science and Earth Observation Laboratory, École Polytechnique Fédérale de Lausanne, Sion, Switzerland
Dalsasso, Emanuele;  Environmental Computational Science and Earth Observation Laboratory, École Polytechnique Fédérale de Lausanne, Sion, Switzerland
Delplanque, Alexandre  ;  Université de Liège - ULiège > Département GxABT > Gestion des ressources forestières
Kellenberger, Benjamin;  Centre for Biodiversity and Environmental Research, University College London, London, United Kingdom ; Department of Ecology and Evolutionary Biology, Yale University, Osborn Memorial Laboratories, New Haven, United States
Tuia, Devis;  Environmental Computational Science and Earth Observation Laboratory, École Polytechnique Fédérale de Lausanne, Sion, Switzerland
Language :
English
Title :
How to minimize the annotation effort in aerial wildlife surveys
Publication date :
November 2025
Journal title :
Ecological Informatics
ISSN :
1574-9541
eISSN :
1878-0512
Publisher :
Elsevier
Volume :
91
Pages :
103387
Peer reviewed :
Peer Reviewed verified by ORBi
Funding text :
This research has been carried out as part of the project WildDrone, funded by the European Union's Horizon Europe Research and Innovation Program under the Marie Sk\u0142odowska-Curie Grant Agreement No. 101071224, the EPSRC funded Autonomous Drones for Nature Conservation Missions grant (EP/X029077/1), and the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number 22.00280.This research has been carried out as part of the project WildDrone, funded by the European Union\u2019s Horizon Europe Research and Innovation Program under the Marie Sk\u0142odowska-Curie Grant Agreement No. 101071224 , the EPSRC funded Autonomous Drones for Nature Conservation Missions grant ( EP/X029077/1 ), and the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number 22.00280 .
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