[en] BACKGROUND: Posidonia oceanica forms extensive seagrass meadows in the Mediterranean Sea, providing key ecosystem services. However, these meadows decline due to anthropogenic pressures like anchoring and coastal development. Transplantation-based restoration has been explored for decades, yet the role of the plant-associated microbiome in restoration success remains largely unknown.
RESULTS: 16 S rRNA gene amplicon sequencing was used to investigate how different transplantation methods and donor origins influence the bacterial communities of P. oceanica cuttings two years post-transplantation. We tested three transplantation methods, iron staples, coconut fiber mats, and BESE elements, and compared them with control meadows and donor populations from two different origins: naturally uprooted storm-fragments and intermatte cuttings manually harvested from established meadows. Our results show that transplantation methods strongly shape bacterial communities in seagrass roots. Iron staples promoted microbial assemblages most similar to natural meadows, likely due to direct sediment contact enhancing recruitment of key functional bacterial orders such as Chromatiales and Desulfobacterales. In contrast, BESE elements and coconut fiber mats displayed dissimilar bacterial communities compared to control meadows, likely due to material composition and physical separation between the cuttings and the sediment. Donor origin had only subtle effects on bacterial communities' structure, although intermatte cuttings showed higher abundances of Candidatus Thiodiazotropha, a genus thought to be involved sulfur oxidation and nitrogen fixation.
CONCLUSION: Our results demonstrate that transplantation methods strongly influence root-associated bacterial communities. Limited sediment contact in elevated substrates delayed the establishment of key functional bacteria, highlighting the importance of direct interaction with the sediment microbial pool. These results imply that restoration strategies should prioritize methods enhancing sediment-root interactions to support microbial recovery. Incorporating microbiome considerations, such as optimized substrates or microbial inoculation, could improve the resilience and long-term success of P. oceanica restoration.
Boulenger, Arnaud ; Université de Liège - ULiège > Freshwater and OCeanic science Unit of reSearch (FOCUS)
Aires, Tânia; Centro de Ciências do Mar (CCMAR), Centro de Investigação Marinha e Ambiental (CIMAR), Universidade do Algarve, Faro, Portugal
Engelen, Aschwin H; Centro de Ciências do Mar (CCMAR), Centro de Investigação Marinha e Ambiental (CIMAR), Universidade do Algarve, Faro, Portugal
Muyzer, Gerard; Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands
Marengo, Michel ; Université de Liège - ULiège > Département de Biologie, Ecologie et Evolution > Océanographie biologique ; STAtion de REcherche Sous-marines et Océanographiques (STARESO), Calvi, France
Gobert, Sylvie ; Université de Liège - ULiège > Département de Biologie, Ecologie et Evolution > Océanographie biologique ; STAtion de REcherche Sous-marines et Océanographiques (STARESO), Calvi, France
Language :
English
Title :
Microbiome matters: how transplantation methods and donor origins shape the successful restoration of the seagrass Posidonia oceanica.
Collectivity of Corsica Agence de l'eau Rhône Méditerranée Corse ULiège - University of Liège F.R.S.-FNRS - Fonds de la Recherche Scientifique FCT - Foundation for Science and Technology
Funding text :
Fonds National de la Recherche Scientifique — FNRS (grants ASP 40006932
and CDR J.0076.23). This study is part of the STARECAPMED (STAtion of
Reference and rEsearch on Change of local and global Anthropogenic
Pressures on Mediterranean Ecosystems Drifts) project funded by the
Territorial Collectivity of Corsica and by the Rhone-Mediterranean and
Corsican Water Agency. GM was supported by the BioDiversa project
RESTORESEAS,, which was funded by the Dutch Ministry of Agriculture, Nature, and Food Quality. This study also received Portuguese national funds from FCT through projects UIDB/04326/2020 and LA/P/0101/2020 and CCMAR/ID/16/2018 to AE.
C. den Hartog J. Kuo A.W.D. Larkum R.J. Orth C. Duarte Taxonomy and biogeography of seagrasses Seagrasses: biology, ecology and conservation Dordrecht (Netherlands) Springer 1 23
M.A. Hemminga C.M. Duarte M.A. Hemminga C.M. Duarte Taxonomy and distribution Seagrass ecology Cambridge (UK) Cambridge University Press 1 26
J.P. Wright C.G. Jones The concept of organisms as ecosystem engineers ten years on: progress, limitations, and challenges Bioscience 56 3 203 9 10.1641/0006-3568 (2006)056[0203:TCOOAE]2.0.CO;2
Beck MW, Heck KL, Able KW, Childers DL, Eggleston DB, Gillanders BM et al. The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates. BioScience. 2001;51(8):633–41. https://doi.org/10.1641/0006-3568(2001)051[0633:TICAMO]2.0.CO;2.
R. Jeyabaskaran J. Jayasankar T.V. Ambrose K.C. Vineetha Valsalan N.D. Divya N. Raji et al. Conservation of seagrass beds with special reference to associated species and fishery resources J Mar Biol Assoc India 60 1 62 70 10.6024/jmbai.2018.60.1.2038-10
Z. Jiang L. Cui S. Liu C. Zhao Y. Wu Q. Chen et al. Historical changes in seagrass beds in a rapidly urbanizing area of Guangdong province: implications for conservation and management Glob Ecol Conserv 22 e01035 10.1016/j.gecco.2020.e01035
J.D. Ackerman A. Okubo Reduced mixing in a marine macrophyte canopy Funct Ecol 7 3 305 9 10.2307/2390209
M.C. Gambi A.R.M. Nowell P.A. Jumars Flume observations on flow dynamics in Zostera Marina (eelgrass) beds Mar Ecol Prog Ser 61 1–2 159 69
C.M. Duarte J.J. Middelburg N. Caraco Major role of marine vegetation on the oceanic carbon cycle Biogeosciences 2 1–8 1 8 1:CAS:528:DC%2BD2MXpvFGnt7c%3D 10.5194/bg-2-1-2005
C.M. Duarte N. Marbà E. Gacia J.W. Fourqurean J. Beggins C. Barrón et al. Seagrass community metabolism: assessing the carbon sink capacity of seagrass meadows Glob Biogeochem Cycles 24 4 GB4032 1:CAS:528:DC%2BC3MXjtVWqtLg%3D 10.1029/2010GB003793
M.P. Turschwell R.M. Connolly J.C. Dunic M. Sievers C.A. Buelow R.M. Pearson et al. Anthropogenic pressures and life history predict trajectories of seagrass meadow extent at a global scale Proc Natl Acad Sci U S A 118 45 e2110802118 1:CAS:528:DC%2BB3MXisVGqt7nK 10.1073/pnas.2110802118 34725160 8609331
M. Waycott C.M. Duarte T.J.B. Carruthers R.J. Orth W.C. Dennison S. Olyarnik et al. Accelerating loss of seagrasses across the Globe threatens coastal ecosystems Proc Natl Acad Sci U S A 106 30 12377 81 10.1073/pnas.0905620106 19587236 2707273
R.J. Rezek B.T. Furman R.P. Jung M.O. Hall S.S. Bell Long-term performance of seagrass restoration projects in florida, USA Sci Rep 9 1 1 11 1:CAS:528:DC%2BC1MXitV2htr3K 10.1038/s41598-019-51856-9
M.M. van Katwijk A. Thorhaug N. Marbà R.J. Orth C.M. Duarte G.A. Kendrick et al. Global analysis of seagrass restoration: the importance of large-scale planting J Appl Ecol 53 2 567 78 10.1111/1365-2664.12562
P. Descamp S. Personnic S. Gobert A. Boulenger M. Leduc G. Delaruelle et al. Seagrass sod transplantation: A relevant tool for preventing the destruction of meadows in coastal construction projects Environ Challenges 18 101087 10.1016/j.envc.2025.101087
A. Abadie P. Lejeune G. Pergent S. Gobert From mechanical to chemical impact of anchoring in seagrasses: the premises of anthropogenic patch generation in Posidonia oceanica meadows Mar Pollut Bull 109 1 61 71 1:CAS:528:DC%2BC28XpsFKqsLY%3D 10.1016/j.marpolbul.2016.06.022 27289285
A. Abadie J. Richir P. Lejeune M. Leduc S. Gobert Structural changes of seagrass seascapes driven by natural and anthropogenic factors: A multidisciplinary approach Front Ecol Evol 7 1 13 10.3389/fevo.2019.00190
A. Boulenger J. Chapeyroux L. Fullgrabe M. Marengo S. Gobert Assessing Posidonia oceanica recolonisation dynamics for effective restoration designs in degraded anchoring sites Mar Pollut Bull 216 117960 1:CAS:528:DC%2BB2MXovVyltbs%3D 10.1016/j.marpolbul.2025.117960 40233585
C. Corinaldesi S. Bianchelli M. Candela A. Dell’Anno C. Gambi E. Rastelli et al. Microbiome-assisted restoration of degraded marine habitats: a new nature-based solution? Front Mar Sci 10 1227560 10.3389/fmars.2023.1227560
C. Averill M.A. Anthony P. Baldrian F. Finkbeiner J. van den Hoogen T. Kiers et al. Defending earth’s terrestrial Microbiome Nat Microbiol 7 1717 25 1:CAS:528:DC%2BB38XisFCgurjP 10.1038/s41564-022-01228-3 36192539
C.W. Bacon J.F. White Functions, mechanisms and regulation of endophytic and epiphytic microbial communities of plants Symbiosis 68 1–3 87 98 1:CAS:528:DC%2BC2MXhvFWlsbrM 10.1007/s13199-015-0350-2
B.D. Batista B.K. Singh Realities and hopes in the application of microbial tools in agriculture Microb Biotechnol 14 4 1258 68 10.1111/1751-7915.13866 34156754 8313292
S. Mantelin B. Touraine Plant growth-promoting bacteria and nitrate availability: impacts on root development and nitrate uptake J Exp Bot 55 394 27 34 1:CAS:528:DC%2BD3sXhtVShsb7L 10.1093/jxb/erh010 14623902
W. Zhou J. Ling X. Shen Z. Xu Q. Yang W. Yue et al. Inoculation with plant growth-promoting rhizobacteria improves seagrass Thalassia hemprichii photosynthesis performance and shifts rhizosphere Microbiome Mar Environ Res 193 106260 1:CAS:528:DC%2BB3sXisFGgtr%2FL 10.1016/j.marenvres.2023.106260 38061311
S.R. Valdez Y.S. Zhang T. van der Heide M.A. Vanderklift F. Tarquinio R.J. Orth et al. Positive ecological interactions and the success of seagrass restoration Front Mar Sci 7 91 10.3389/fmars.2020.00091
P. Daleo E. Fanjul A.M. Casariego B.R. Silliman M.D. Bertness O. Iribarne Ecosystem engineers activate mycorrhizal mutualism in salt marshes Ecol Lett 10 10 902 8 10.1111/j.1461-0248.2007.01082.x 17845290
C. Cúcio L. Overmars A.H. Engelen G. Muyzer Metagenomic analysis shows the presence of bacteria related to free-living forms of sulfur-oxidizing chemolithoautotrophic symbionts in the rhizosphere of the seagrass Zostera Marina Front Mar Sci 5 171 10.3389/fmars.2018.00171
N. Garcias-Bonet J.M. Arrieta C.M. Duarte N. Marbà Nitrogen-fixing bacteria in mediterranean seagrass (Posidonia oceanica) roots Aquat Bot 131 57 60 1:CAS:528:DC%2BC28Xks1yitLk%3D 10.1016/j.aquabot.2016.03.002
W. Mohr N. Lehnen S. Ahmerkamp H.K. Marchant J.S. Graf B. Tschitschko et al. Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium Nature 600 7887 105 9 1:CAS:528:DC%2BB3MXisVSntL%2FN 10.1038/s41586-021-04063-4 34732889 8636270
F. Tarquinio G.A. Hyndes B. Laverock A. Koenders C. Säwström The seagrass holobiont: Understanding seagrass-bacteria interactions and their role in seagrass ecosystem functioning FEMS Microbiol Lett 366 6 57 1:CAS:528:DC%2BC1MXitVWgt77F 10.1093/femsle/fnz057
M. Vohník O. Borovec Z. Kolaříková R. Sudová M. Réblová Extensive sampling and high-throughput sequencing reveal Posidoniomyces atricolor gen. Et sp. Nov. (Aigialaceae, Pleosporales) as the dominant root mycobiont of the dominant mediterranean seagrass Posidonia oceanica MycoKeys 55 59 86 10.3897/mycokeys.55.35682 31303813 6609996
C. Cúcio A.H. Engelen R. Costa G. Muyzer Rhizosphere microbiomes of European seagrasses are selected by the plant, but are not species-specific Front Microbiol 7 440 10.3389/fmicb.2016.00440 27065991 4815253
B.C. Martin M.S. Alarcon D. Gleeson J.A. Middleton M.W. Fraser M.H. Ryan et al. Root microbiomes as indicators of seagrass health FEMS Microbiol Ecol 96 201 1:CAS:528:DC%2BB3cXhslWntrjJ 10.1093/femsec/fiz201
Graham OJ, Adamczyk EM, Schenk S, Dawkins P, Burke S, Chei E, et al. Manipulation of the seagrass-associated Microbiome reduces disease severity. Environ Microbiol. 2024;26(2). https://doi.org/10.1111/1462-2920.16582.
D. Tasdemir S. Scarpato C. Utermann-Thüsing T. Jensen M. Blümel A. Wenzel-Storjohann et al. Epiphytic and endophytic Microbiome of the seagrass Zostera marina: do they contribute to pathogen reduction in seawater? Sci Total Environ 908 168422 1:CAS:528:DC%2BB3sXitlKhs7rF 10.1016/j.scitotenv.2023.168422 37956849
M.I. Saunders C. Doropoulos E. Bayraktarov R.C. Babcock D. Gorman A.M. Eger et al. Bright spots in coastal marine ecosystem restoration Curr Biol 30 24 R1500 10 1:CAS:528:DC%2BB3MXktlChsg%3D%3D 10.1016/j.cub.2020.10.056 33352137
R. Jongen E.M. Marzinelli A.B. Bugnot A. Ferguson M.W. Fraser T.M. Glasby et al. Integrating belowground interactions into seagrass restoration strategies Oceanogr Mar Biol 62 192 214 10.1201/9781003477518-4
Pergent-Martini C, André S, Castejon I, Deter J, Frau F, Gerakaris V et al. Guidelines for Posidonia oceanica restoration. Report Cooperation Agreement Mediterranean Posidonia Network (MPN), French Biodiversity Agency (OFB) & University of Corsica Pasquale Paoli (UCPP) N°OFB-22-1310. 2024;29+ Appendices.
C.F. Boudouresque A. Blanfuné G. Pergent T. Thibaut Restoration of seagrass meadows in the mediterranean sea: A critical review of effectiveness and ethical issues Water 13 8 1034 10.3390/w13081034
A. Pansini M. Bosch-Belmar M. Berlino G. Sarà G. Ceccherelli Collating evidence on the restoration efforts of the seagrass Posidonia oceanica: current knowledge and gaps Sci Total Environ 851 158320 1:CAS:528:DC%2BB38XitlWit7bL 10.1016/j.scitotenv.2022.158320 36037894
B. Christiaen A. McDonald J. Cebrian A.C. Ortmann Response of the microbial community to environmental change during seagrass transplantation Aquat Bot 109 31 8 1:CAS:528:DC%2BC3sXntVeitLg%3D 10.1016/j.aquabot.2013.03.008
H. Li J. Liu L. Zhang X. Che M. Zhang T. Zhang A pilot restoration of Enhalus acoroides by transplanting dislodged rhizome fragments and its effect on the microbial diversity of submarine sediments J Environ Manage 359 120996 10.1016/j.jenvman.2024.120996 38669885
S. Frasca A. Alabiso M.M. D’Andrea R. Cattaneo L. Migliore Diversity and composition of Posidonia oceanica-associated bacterial and fungal communities: effect of boat-induced mechanical stress in the Villefranche-sur-Mer Bay (France) Diversity 16 10 604 1:CAS:528:DC%2BB2MXjt1yms74%3D 10.3390/d16100604
L. Fullgrabe Q. Fontaine M. Marengo A. Donnay D. Sirjacobs L. Iborra et al. STARECAPMED (STAtion of reference and research on change of local and global anthropogenic pressures on mediterranean ecosystems Drifts)—Year 2021 Research report STARESO Calvi, France 123
A. Boulenger S. Roberty M.M. Lopez Velosa M. Marengo S. Gobert The use of photo-biological parameters to assess the establishment success of Posidonia oceanica cuttings after transplantation Water 16 12 1702 1:CAS:528:DC%2BB2cXisFyntbfE 10.3390/w16121702
S. Gobert G. Lepoint C. Pelaprat F. Remy P. Lejeune J. Richir A. Abadie Temporal evolution of sand corridors in a Posidonia oceanica seascape: A 15-year study Mediterr Mar Sci 17 3 777 84 10.12681/mms.1816
P. Cruaud A. Vigneron M.-S. Fradette S.J. Charette M.J. Rodriguez C.C. Dorea et al. Open the sterivex™ casing: an easy and effective way to improve DNA extraction yields Limnol Oceanogr Methods 10.1002/lom3.10221
N. Bodenhausen M.W. Horton J. Bergelson Bacterial communities associated with the leaves and the roots of Arabidopsis Thaliana PLoS ONE 8 2 e56329 1:CAS:528:DC%2BC3sXjsVaku7o%3D 10.1371/journal.pone.0056329 23457551 3574144
B.J. Callahan P.J. McMurdie M.J. Rosen A.W. Han A.J.A. Johnson S.P. Holmes DADA2: High-resolution sample inference from illumina amplicon data Nat Methods 13 7 581 3 1:CAS:528:DC%2BC28XosVWitb4%3D 10.1038/nmeth.3869 27214047 4927377
D.S. Lundberg S.L. Lebeis S.H. Paredes S. Yourstone J. Gehring S. Malfatti et al. Defining the core Arabidopsis Thaliana root Microbiome Nature 488 7409 86 90 1:CAS:528:DC%2BC38XhtFCgsrrK 10.1038/nature11237 22859206 4074413
T. Aires T.M. Stuij G. Muyzer E.A. Serrão A.H. Engelen Characterization and comparison of bacterial communities of an invasive and two native Caribbean seagrass species sheds light on the possible influence of the Microbiome on invasive mechanisms Front Microbiol 12 653998 10.3389/fmicb.2021.653998 34434172 8381869
M.J. Anderson R.N. Gorley K.R. Clarke PERMANOVA + for PRIMER: guide to software and statistical methods Plymouth (UK) PRIMER-E
N. Segata J. Izard L. Waldron D. Gevers L. Miropolsky W.S. Garrett et al. Metagenomic biomarker discovery and explanation Genome Biol 12 1 R60 10.1186/gb-2011-12-6-r60 21702898 3218848
A. Dhariwal J. Chong S. Habib I.L. King L.B. Agellon J. Xia MicrobiomeAnalyst A web-based tool for comprehensive statistical, visual and meta-analysis of Microbiome data Nucleic Acids Res 45 W1 W180 8 1:CAS:528:DC%2BC1cXhs1ajurw%3D 10.1093/nar/gkx295 28449106 5570177
B.C. Martin D. Gleeson J. Statton A.R. Siebers P. Grierson M.H. Ryan G.A. Kendrick Low light availability alters root exudation and reduces putative beneficial microorganisms in seagrass roots Front Microbiol 8 2667 10.3389/fmicb.2017.02667 29375529 5768916
L. Wang M.K. English F. Tomas R.S. Muellera Recovery and community succession of the Zostera Marina rhizobiome after transplantation Appl Environ Microbiol 87 3 1 16 10.1128/AEM.02326-20
T. Aires E.A. Serrão A.H. Engelen Host and environmental specificity in bacterial communities associated to two highly invasive marine species (Asparagopsis spp) Front Microbiol 7 559 10.3389/fmicb.2016.00559 27148239 4839258
Brodersen KE, Mosshammer M, Bittner MJ, Hallstrøm S, Santner J, Riemann L, Kühl M. Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs. Microbiol Spectr. 2024;12(4). https://doi.org/10.1128/spectrum.03335-23.
Lebeis SL, Paredes SH, Lundberg DS, Breakfield N, Gehring J, McDonald M, et al. Salicylic acid modulates colonization of the root Microbiome by specific bacterial taxa. Science. 2015;349(6250). https://doi.org/10.1126/science.aaa8764.
M. García-Martínez A. López-López M.L. Calleja N. Marbà C.M. Duarte Bacterial community dynamics in a seagrass (Posidonia oceanica) meadow sediment Estuaries Coasts 32 2 276 86 1:CAS:528:DC%2BD1MXhvVOisb0%3D 10.1007/s12237-008-9115-y
García-Martínez M, Kuo J, Kilminster K, Walker D, Rosselló-Mora R, Duarte CM. Microbial colonization in the seagrass Posidonia spp. roots. Mar Biol Res. 2005;1(6):388–95. https://doi.org/10.1080/17451000500443419Rolando JL, Kolton M, Song T, Liu Y, Pinamang P, Conrad R. Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora. Nat Commun. 2024;15(1). doi:10.1038/s41467-024-47646-1.
F. Thomas A.E. Giblin Z.G. Cardon S.M. Sievert Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments Front Microbiol 5 309 10.3389/fmicb.2014.00309 25009538 4068000
S. König O. Gros S.E. Heiden T. Hinzke A. Thürmer A. Poehlein et al. Nitrogen fixation in a chemoautotrophic lucinid symbiosis Nat Microbiol 2 16193 1:CAS:528:DC%2BC2sXkvFyrtbg%3D 10.1038/nmicrobiol.2016.193 27775698
S.J. Lim B.G. Davis D.E. Gill J. Walton E. Nachman A.S. Engel et al. Taxonomic and functional heterogeneity of the gill Microbiome in a symbiotic coastal Mangrove lucinid species ISME J 13 4 902 20 1:CAS:528:DC%2BC1cXisVyltL7O 10.1038/s41396-018-0318-3 30518817
J.T. Osvatic L.G.E. Wilkins L. Leibrecht B. Yuen Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups Proc Natl Acad Sci U S A 118 29 e2104378118 1:CAS:528:DC%2BB3MXitVyltL%2FM 10.1073/pnas.2104378118 34272286 8307296
J.M. Petersen A. Kemper H. Gruber-Vodicka U. Cardini M. van der Geest M. Kleiner et al. Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation Nat Microbiol 2 16195 1:CAS:528:DC%2BC2sXkvFyrur4%3D 10.1038/nmicrobiol.2016.195 27775707 6872982
N. Lehnen H.K. Marchant A. Schwedt J. Milucka C. Lott M. Weber et al. High rates of microbial dinitrogen fixation and sulfate reduction associated with the mediterranean seagrass Posidonia oceanica Syst Appl Microbiol 39 7 476 83 1:CAS:528:DC%2BC28XhsVOqurvN 10.1016/j.syapm.2016.08.004 27638196
B.C. Crump J.M. Wojahn F. Tomas R.S. Mueller Metatranscriptomics and amplicon sequencing reveal mutualisms in seagrass microbiomes Front Microbiol 9 388 10.3389/fmicb.2018.00388 29599758 5863793
A.S. Galushko E.P. Rozanova Desulfobacterium cetonicum sp. nov.: A sulfate-reducing bacterium which oxidizes fatty acids and ketones Microbiology 60 6 742 6 10.5555/19921377027
T. Van Der Heide L.L. Govers J. De Fouw H. Olff M. Van Der Geest M.M. Van Katwijk et al. A three-stage symbiosis forms the foundation of seagrass ecosystems Science 336 6087 1432 4 1:CAS:528:DC%2BC38Xotlequ70%3D 10.1126/science.1219973 22700927
S. Malkin U. Cardini Facilitative interactions on the rise: cable bacteria associate with diverse aquatic plants New Phytol 232 5 1897 900 10.1111/NPH.17664 34453754
V.V. Scholz B.C. Martin R. Meyer A. Schramm M.W. Fraser L.P. Nielsen et al. Cable bacteria at oxygen-releasing roots of aquatic plants: A widespread and diverse plant-microbe association New Phytol 232 5 2138 51 1:CAS:528:DC%2BB3MXhslKhsLnO 10.1111/NPH.17415 33891715 8596878
A.J. Kessler M. Wawryk U. Marzocchi K.L. Roberts W.W. Wong N. Risgaard-Petersen et al. Cable bacteria promote DNRA through iron sulfide dissolution Limnol Oceanogr 64 3 1228 38 1:CAS:528:DC%2BC1MXhtFWgtLfK 10.1002/lno.11110
K.U. Kjeldsen L. Schreiber C.A. Thorup T. Boesen J.T. Bjerg T. Yang et al. On the evolution and physiology of cable bacteria Proc Natl Acad Sci U S A 116 38 19116 25 1:CAS:528:DC%2BC1MXhvVSku7zK 10.1073/pnas.1903514116 31427514 6754541
T. Bacci M. Scardi A. Tomasello L.M. Valiante L. Piazzi S. Calvo F. Badalamenti F. Di Nuzzo V. Raimondi M. Assenzo et al. Long-term response of Posidonia oceanica meadow restoration at the population and plant level: implications for management decisions Restor Ecol 32 e14360 10.1111/rec.14360
A. Pansini M. Deroma I. Guala B. Monnier C. Pergent-Martini L. Piazzi P. Stipcich G. Ceccherelli The resilience of transplanted seagrass traits encourages detection of restoration success J Environ Manage 357 120744 1:CAS:528:DC%2BB2cXmvFCruro%3D 10.1016/j.jenvman.2024.120744 38552518
K.E. Brodersen N. Siboni D.A. Nielsen M. Pernice P.J. Ralph J. Seymour M. Kühl Seagrass rhizosphere microenvironment alters plant-associated microbial community composition Environ Microbiol 20 8 2854 64 1:CAS:528:DC%2BC1cXhslGlsbfM 10.1111/1462-2920.14245 29687545
F.I. Pugnaire J.A. Morillo J. Peñuelas P.B. Reich R.D. Bardgett A. Gaxiola et al. Climate change effects on plant-soil feedbacks and consequences for biodiversity and functioning of terrestrial ecosystems Sci Adv 5 11 eaaz1834 1:CAS:528:DC%2BB3cXhtlaks7nI 10.1126/sciadv.aaz1834 31807715 6881159
D.H. Buckley V. Huangyutitham S.-F. Hsu T.A. Nelson Stable isotope probing with ¹⁵N₂ reveals novel noncultivated diazotrophs in soil Appl Environ Microbiol 73 10 3196 204 1:CAS:528:DC%2BD2sXlslSnuro%3D 10.1128/AEM.02610-06 17369332 1907113
M. Morando D.G. Capone Intraclude heterogeneity in nitrogen utilization by marine prokaryotes revealed using stable isotope probing coupled with Tag sequencing (Tag-SIP) Front Microbiol 7 1932 10.3389/fmicb.2016.01932 27994576 5133248
M.K. Reay A.F. Charteris D.L. Jones R.P. Evershed ¹⁵N-amino sugar stable isotope probing (¹⁵N-SIP) to trace the assimilation of fertiliser-N by soil bacterial and fungal communities Soil Biol Biochem 138 107599 1:CAS:528:DC%2BC1MXhvVyltrrM 10.1016/j.soilbio.2019.107599
K.R. Lekha Field instrumentation and monitoring of soil erosion in Coir geotextile stabilised slopes—A case study Geotext Geomembr 22 5 399 413 10.1016/j.geotexmem.2003.12.003
M. Prambauer C. Wendeler J. Weitzenböck C. Burgstaller Biodegradable geotextiles– An overview of existing and potential materials Geotext Geomembr 47 1 48 59 10.1016/j.geotexmem.2018.09.006
S.A. Rautenbach R. Pieraccini K. Nebel A.H. Engelen Marine biodegradation of natural potential carrier substrates for seagrass restoration Mar Ecol 10.1111/maec.12813
Nitsch CK, Walters LJ, Sacks JS, Sacks PE, Chambers LG. Biodegradable material for oyster reef restoration: First-year performance and biogeochemical considerations in a coastal lagoon. Sustainability. 2021;13(13). https://doi.org/10.3390/su13137415.
Liu S, Jiang Z, Deng Y, Wu Y, Zhang J, et al. Effects of nutrient loading on sediment bacterial and pathogen communities within seagrass meadows. MicrobiologyOpen. 2018;7(5). https://doi.org/10.1002/mbo3.600.
F.A. de Vogel M. Goudriaan E.R. Zettler H. Niemann A. Eich M. Weber et al. Biodegradable plastics in mediterranean coastal environments feature contrasting microbial succession Sci Total Environ 928 172288 1:CAS:528:DC%2BB2cXoslGksr4%3D 10.1016/j.scitotenv.2024.172288 38599394
Sun Y, Mazzotta MG, Miller CA, Apprill A, Izallalen M, Mazumder S, et al. Distinct microbial communities degrade cellulose diacetate bioplastics in the coastal ocean. Appl Environ Microbiol. 2023;89(12). https://doi.org/10.1128/aem.01651-23.
Rubio-Portillo E, Martin-Cuadrado A-B, Ramos-Esplá ÁÁ, Antón J. Metagenomics unveils Posidonia oceanica banquettes as a potential source of novel bioactive compounds and carbohydrate-active enzymes (CAZymes). mSystems. 2021;6(5). https://doi.org/10.1128/msystems.00866-21.
Boudouresque CF, Meinesz A. Découverte de l’herbier de posidonie. Volume 4. Cahier Parc National de Port-Cros; 1982.
S. Egan T. Harder C. Burke P. Steinberg S. Kjelleberg T. Thomas The seaweed holobiont: Understanding seaweed–bacteria interactions FEMS Microbiol Rev 37 4 462 76 1:CAS:528:DC%2BC3sXntlersrk%3D 10.1111/1574-6976.12011 23157386
C. Offret F. Desriac P. Le Chevalier J. Mounier C. Jégou Y. Fleury Spotlight on antimicrobial metabolites from the marine bacteria Pseudoalteromonas: chemodiversity and ecological significance Mar Drugs 14 7 129 1:CAS:528:DC%2BC2sXhs1GjtbzF 10.3390/md14070129 27399731 4962019
T.L. Skovhus N.B. Ramsing C. Holmström S. Kjelleberg I. Dahllöf Real-time quantitative PCR for assessment of abundance of Pseudoalteromonas species in marine samples Appl Environ Microbiol 70 4 2373 82 1:CAS:528:DC%2BD2cXjtlOhsrc%3D 10.1128/AEM.70.4.2373-2382.2004 15066834 383141
L. Lin X. Wang L. Cao M. Xu Lignin catabolic pathways reveal unique characteristics of dye-decolorizing peroxidases in Pseudomonas Putida Environ Microbiol 21 6 1847 63 1:CAS:528:DC%2BC1MXoslSkt7g%3D 10.1111/1462-2920.14593 30882973
S.S. Paulsen M.L. Strube P.K. Bech L. Gram E.C. Sonnenschein Marine chitinolytic Pseudoalteromonas represents an untapped reservoir of bioactive potential mSystems 4 4 e00060 19 10.1128/mSystems.00060-19 31213521 6581688
S.M. Trevathan-Tackett T.C. Jeffries P.I. Macreadie B. Manojlovic P. Ralph Long-term decomposition captures key steps in microbial breakdown of seagrass litter Sci Total Environ 705 135806 1:CAS:528:DC%2BC1MXisVSktrvJ 10.1016/j.scitotenv.2019.135806 31838420
G. Bonito H. Reynolds M.S. Robeson J. Nelson B.P. Hodkinson G. Tuskan et al. Plant host and soil origin influence fungal and bacterial assemblages in the roots of Woody plants Mol Ecol 23 13 3356 70 10.1111/mec.12821 24894495
C.H. Haney B.S. Samuel J. Bush F.M. Ausubel Associations with rhizosphere bacteria can confer an adaptive advantage to plants Nat Plants 1 15051 1:CAS:528:DC%2BC2MXhvFClsLvL 10.1038/nplants.2015.51 27019743 4806546
K. Hartman M.G.A. van der Heijden R.A. Wittwer et al. Cropping practices manipulate abundance patterns of root and soil Microbiome members paving the way to smart farming Microbiome 6 14 10.1186/s40168-017-0389-9 29338764 5771023
E.M. Sogin D. Michelhod H.R. Gruber-Vodicka P. Bourceau B. Geier D.V. Meier et al. Sugars dominate the seagrass rhizosphere Nat Ecol Evol 6 866 77 10.1038/s41559-022-01740-z 35501482 9262712
X. Zhang Y. Wu S. Liu J. Li Z. Jiang H. Luo et al. Plant growth and development of tropical seagrass determined rhizodeposition and its related microbial community Mar Pollut Bull 199 115940 1:CAS:528:DC%2BB3sXis12jt7bF 10.1016/j.marpolbul.2023.115940 38150979
S.M. Trevathan-Tackett C.D.H. Sherman M.J. Huggett A.H. Campbell B. Laverock V. Hurtado-McCormick et al. A horizon scan of priorities for coastal marine Microbiome research Nat Ecol Evol 3 11 1509 20 10.1038/s41559-019-0983-7 31636428
J. Sun Q. Zhao Y.-N. Gao Q.-G. Long W.-J. Yan P.-D. Zhang Restoration of degraded seagrass meadows: effects of plant growth-promoting rhizobacteria (PGPR) inoculation on Zostera Marina growth, rhizosphere Microbiome and ecosystem functionality J Environ Manage 371 123286 1:CAS:528:DC%2BB2cXisVKqtrrN 10.1016/j.jenvman.2024.123286 39531770