Case report: Thirty-year progression of an EMPF1 encephalopathy due to defective mitochondrial and peroxisomal fission caused by a novel de novo heterozygous DNM1L variant. - 2022
Case report: Thirty-year progression of an EMPF1 encephalopathy due to defective mitochondrial and peroxisomal fission caused by a novel de novo heterozygous DNM1L variant.
[en] Mutations in DNM1L (DRP1), which encode a key player of mitochondrial and peroxisomal fission, have been reported in patients with the variable phenotypic spectrum, ranging from non-syndromic optic atrophy to lethal infantile encephalopathy. Here, we report a case of an adult female patient presenting with a complex neurological phenotype that associates axonal sensory neuropathy, spasticity, optic atrophy, dysarthria, dysphasia, dystonia, and ataxia, worsening with aging. Whole-exome sequencing revealed a heterozygous de novo variant in the GTPase domain of DNM1L [NM_001278464.1: c.176C>A p.(Thr59Asn)] making her the oldest patient suffering from encephalopathy due to defective mitochondrial and peroxisomal fission-1. In silico analysis suggested a protein destabilization effect of the variant Thr59Asn. Unexpectedly, Western blotting disclosed profound decrease of DNM1L expression, probably related to the degradation of DNM1L complexes. A detailed description of mitochondrial and peroxisomal anomalies in transmission electron and 3D fluorescence microscopy studies confirmed the exceptional phenotype of this patient.
Disciplines :
Neurology
Author, co-author :
Lhuissier, Charlène; MitoLab Team, UMR CNRS 6015-INSERM U1083, Unité MitoVasc, SFR ICAT, Université d'Angers, Angers, France
Wagner, Bart E; Department of Histopathology, Royal Hallamshire Hospital, Sheffield, United Kingdom
Vincent, Amy; Wellcome Centre for Mitochondrial Research, Faculty of Medical Sciences, Translational and Clinical Research Institute, Newcastle University, Newcastle upon Tyne, United Kingdom
Garraux, Gaëtan ; Centre Hospitalier Universitaire de Liège - CHU > > Service de neurologie
HOUGRAND, Olivier ; Centre Hospitalier Universitaire de Liège - CHU > > Service d'anatomie et cytologie pathologiques
Van Coster, Rudy; Division of Pediatric Neurology and Metabolism, Department of Pediatrics, Ghent University Hospital, Ghent, Belgium
Benoit, Valérie ; Université de Liège - ULiège > Département de pharmacie > GIGA-R : Chimie médicale ; Institut de Pathologie et de Génétique, Gosselies, Belgium
Karadurmus, Deniz; Institut de Pathologie et de Génétique, Gosselies, Belgium
Lenaers, Guy; MitoLab Team, UMR CNRS 6015-INSERM U1083, Unité MitoVasc, SFR ICAT, Université d'Angers, Angers, France ; Service de Neurologie, Centre Hospitalier Universitaire d'Angers, Angers, France
Gueguen, Naïg; MitoLab Team, UMR CNRS 6015-INSERM U1083, Unité MitoVasc, SFR ICAT, Université d'Angers, Angers, France ; Service de Biochimie et Biologie Moléculaire, CHU Angers, Angers, France
Chevrollier, Arnaud; MitoLab Team, UMR CNRS 6015-INSERM U1083, Unité MitoVasc, SFR ICAT, Université d'Angers, Angers, France
Maystadt, Isabelle; Institut de Pathologie et de Génétique, Gosselies, Belgium ; Faculté de Médecine, URPhyM, Université de Namur, Namur, Belgium
Language :
English
Title :
Case report: Thirty-year progression of an EMPF1 encephalopathy due to defective mitochondrial and peroxisomal fission caused by a novel de novo heterozygous DNM1L variant.
This work was supported by “Université d'Angers.” AV is supported by a Henry Wellcome Fellowship (215888/Z/19/Z).We are thankful to the patient and her family for participating in the study. We thank Katharina DULIEU from the Department of Physical and Rehabilitation Medicine, Libramont, Belgium, for the clinical follow-up of the patient. We thank the University of Angers, SCIAM Microscopy Core Facility, SFR ICAT, F-49000 Angers, France.
Koch A Thiemann M Grabenbauer M Yoon Y McNiven MA Schrader M. Dynamin-like protein 1 is involved in peroxisomal fission. J Biol Chem. (2003) 278:8597–605. 10.1074/jbc.M21176120012499366
Li X Gould SJ. The dynamin-like GTPase DLP1 is essential for peroxisome division and is recruited to peroxisomes in part by PEX11. J Biol Chem. (2003) 278:17012–20. 10.1074/jbc.M21203120012618434
Bonekamp NA Vormund K Jacob R Schrader M. Dynamin-like protein 1 at the Golgi complex: a novel component of the sorting/targeting machinery en route to the plasma membrane. Exp Cell Res. (2010) 316:3454–67. 10.1016/j.yexcr.2010.07.02020688057
Kraus F Roy K Pucadyil TJ Ryan MT. Function and regulation of the divisome for mitochondrial fission. Nature. (2021) 590:57–66. 10.1038/s41586-021-03214-x33536648
Wenger J Klinglmayr E Fröhlich C Eibl C Gimeno A Hessenberger M et al. Functional mapping of human dynamin-1-like GTPase domain based on x-ray structure analyses. PLoS ONE. (2013) 8:e71835. 10.1371/journal.pone.007183523977156
Koirala S Guo Q Kalia R Bui HT Eckert DM Frost A et al. Interchangeable adaptors regulate mitochondrial dynamin assembly for membrane scission. Proc Natl Acad Sci U S A. (2013) 110:E1342–1351. 10.1073/pnas.130085511023530241
Joshi AU Minhas PS Liddelow SA Haileselassie B Andreasson KI Dorn GW et al. Fragmented mitochondria released from microglia trigger A1 astrocytic response and propagate inflammatory neurodegeneration. Nat Neurosci. (2019) 22:1635–48. 10.1038/s41593-019-0486-033324000
Ishihara N Nomura M Jofuku A Kato H Suzuki SO Masuda K et al. Mitochondrial fission factor Drp1 is essential for embryonic development and synapse formation in mice. Nat Cell Biol. (2009) 11:958–66. 10.1038/ncb190719578372
Keller N Paketci C Edem P Thiele H Yis U Wirth B et al. novo DNM1L variant presenting with severe muscular atrophy, dystonia and sensory neuropathy. Eur J Med Genet. (2021) 64:104134. 10.1016/j.ejmg.2020.10413433387674
Liu X Zhang Z Li D Lei M Li Q Liu X et al. DNM1L-related mitochondrial fission defects presenting as encephalopathy: a case report and literature review. Front Pediatr. (2021) 9:626657. 10.3389/fped.2021.62665734307245
Piccoli C Scrima R D'Aprile A Chetta M Cela O Pacelli C et al. Pathogenic DNM1L Variant (1085G>A) linked to infantile progressive neurological disorder: evidence of maternal transmission by germline mosaicism and influence of a contemporary in cis variant (1535T>C). Genes (Basel). (2021) 12:1295. 10.3390/genes1209129534573276
Trujillano D Bertoli-Avella AM Kumar Kandaswamy K Weiss ME Köster J Marais A et al. Clinical exome sequencing: results from 2819 samples reflecting 1000 families. Eur J Hum Genet. (2017) 25:176–82. 10.1038/ejhg.2016.14627848944
Whitley BN Lam C Cui H Haude K Bai R Escobar L et al. Aberrant Drp1-mediated mitochondrial division presents in humans with variable outcomes. Hum Mol Genet. (2018) 27:3710–9. 10.1093/hmg/ddy28730085106
Verrigni D Di Nottia M Ardissone A Baruffini E Nasca A Legati A et al. Clinical-genetic features and peculiar muscle histopathology in infantile DNM1L-related mitochondrial epileptic encephalopathy. Hum Mutat. (2019) 40:601–18. 10.1002/humu.2372930801875
Longo F Benedetti S Zambon AA Sora MGN Di Resta C De Ritis D et al. Impaired turnover of hyperfused mitochondria in severe axonal neuropathy due to a novel DRP1 mutation. Hum Mol Genet. (2020) 29:177–88. 10.1093/hmg/ddz21131868880
Wei Y Qian M. Case report: a novel de novo mutation in DNM1L presenting with developmental delay, ataxia, and peripheral neuropathy. Front Pediatr. (2021) 9:604105. 10.3389/fped.2021.60410533718295
Kors S Hacker C Bolton C Maier R Reimann L Kitchener EJA et al. Regulating peroxisome-ER contacts via the ACBD5-VAPB tether by FFAT motif phosphorylation and GSK3β. J Cell Biol. (2022) 221:e202003143. 10.1083/jcb.20200314335019937
Assia Batzir N Bhagwat PK Eble TN Liu P Eng CM Elsea SH et al. De novo missense variant in the GTPase effector domain (GED) of DNM1L leads to static encephalopathy and seizures. Cold Spring Harb Mol Case Stud. (2019) 5:a003673. 10.1101/mcs.a00367330850373
Waterham HR Koster J van Roermund CWT Mooyer PAW Wanders RJA Leonard JV et al. lethal defect of mitochondrial and peroxisomal fission. N Engl J Med. (2007) 356:1736–41. 10.1056/NEJMoa06443617460227
Ladds E Whitney A Dombi E Hofer M Anand G Harrison V et al. De novo DNM1L mutation associated with mitochondrial epilepsy syndrome with fever sensitivity. Neurol Genet. (2018) 4:e258. 10.1212/NXG.000000000000025830109270
Ryan CS Fine AL Cohen AL Schiltz BM Renaud DL Wirrell EC et al. De novo DNM1L variant in a teenager with progressive paroxysmal dystonia and lethal super-refractory myoclonic status epilepticus. J Child Neurol. (2018) 33:651–8. 10.1177/088307381877820329877124
Schmid SJ Wagner M Goetz C Makowski C Freisinger P Berweck S et al. Novo dominant negative mutation in DNM1L causes sudden onset status epilepticus with subsequent epileptic encephalopathy. Neuropediatrics. (2019) 50:197–201. 10.1055/s-0039-168521730939602
Gerber S Charif M Chevrollier A Chaumette T Angebault C Kane MS et al. Mutations in DNM1L, as in OPA1, result in dominant optic atrophy despite opposite effects on mitochondrial fusion and fission. Brain. (2017) 140:2586–96. 10.1093/brain/awx21928969390
Gerber S Charif M Chevrollier A Chaumette T Angebault C Kane S et al. Reply: The expanding neurological phenotype of DNM1L-related disorders. Brain. (2018) 141:e29. 10.1093/brain/awy02729529130
Labrousse AM Zappaterra MD Rube DA van der Bliek AM. C elegans dynamin-related protein DRP-1 controls severing of the mitochondrial outer membrane. Mol Cell. (1999) 4:815–26. 10.1016/S1097-2765(00)80391-310619028
Smirnova E Griparic L Shurland DL van der Bliek AM. Dynamin-related protein Drp1 is required for mitochondrial division in mammalian cells. Mol Biol Cell. (2001) 12:2245–56. 10.1091/mbc.12.8.224511514614
Leshinsky-Silver E Lev D Malinger G Shapira D Cohen S Lerman-Sagie T et al. Leigh disease presenting in utero due to a novel missense mutation in the mitochondrial DNA-ND3. Mol Genet Metab. (2010) 100:65–70. 10.1016/j.ymgme.2010.02.00220202874
Bonneau D Colin E Oca F Ferré M Chevrollier A Guéguen N et al. Early-onset Behr syndrome due to compound heterozygous mutations in OPA1. Brain. (2014) 137:e301. 10.1093/brain/awu18425012222
Koch J Feichtinger RG Freisinger P Pies M Schrödl F Iuso A et al. Disturbed mitochondrial and peroxisomal dynamics due to loss of MFF causes Leigh-like encephalopathy, optic atrophy and peripheral neuropathy. J Med Genet. (2016) 53:270–8. 10.1136/jmedgenet-2015-10350026783368
Chevrollier A Guillet V Loiseau D Gueguen N de Crescenzo M-AP Verny C et al. Hereditary optic neuropathies share a common mitochondrial coupling defect. Ann Neurol. (2008) 63:794–8. 10.1002/ana.2138518496845
Vincent AE Turnbull DM Eisner V Hajnóczky G Picard M. Mitochondrial Nanotunnels. Trends Cell Biol. (2017) 27:787–99. 10.1016/j.tcb.2017.08.00928935166
Vincent AE White K Davey T Philips J Ogden RT Lawless C et al. Quantitative 3D Mapping of the Human Skeletal Muscle Mitochondrial Network. Cell Rep. (2019) 26:996–1009.e4. 10.1016/j.celrep.2019.03.05130943412
Vincent AE Ng YS White K Davey T Mannella C Falkous G et al. The Spectrum of Mitochondrial Ultrastructural Defects in Mitochondrial Myopathy. Sci Rep. (2016) 6:30610. 10.1038/srep3061027506553