Keywords :
DNA repair; bioinformatics; heterochromatin assembly; protein–protein interactions; proteomics; proteostasis; Membrane Proteins; HSPA8 protein, human; HSC70 Heat-Shock Proteins; Humans; Nuclear Envelope/metabolism; Protein Binding; Protein Interaction Mapping/methods; Computational Biology/methods; DNA Repair; Protein Interaction Maps; Membrane Proteins/metabolism; Membrane Proteins/genetics; Computational Biology; Nuclear Envelope; Protein Interaction Mapping; Catalysis; Molecular Biology; Spectroscopy; Computer Science Applications; Physical and Theoretical Chemistry; Organic Chemistry; Inorganic Chemistry
Abstract :
[en] The nuclear envelope (NE), a protective membrane bordering the nucleus, is composed of highly specialized proteins that are indispensable for normal cellular activity. Lamina-associated polypeptide 1 (LAP1) is a NE protein whose functions are just beginning to be unveiled. The fact that mutations causing LAP1 deficiency are extremely rare and pathogenic is indicative of its paramount importance to preserving human health, anticipating that LAP1 might have a multifaceted role in the cell. Mapping the LAP1 protein interactome is, thus, imperative to achieve an integrated view of its potential biological properties. To this end, we employed in silico- and mass spectrometry-based approaches to identify candidate LAP1-interacting proteins, whose functional attributes were subsequently characterized using bioinformatics tools. Our results reveal the complex and multifunctional network of protein-protein interactions associated to LAP1, evidencing a strong interconnection between LAP1 and cellular processes as diverse as chromatin and cytoskeleton organization, DNA repair, RNA processing and translation, as well as protein biogenesis and turnover, among others. Novel interactions between LAP1 and DNA repair proteins were additionally validated, strengthening the previously proposed involvement of LAP1 in the maintenance of genomic stability. Overall, this study reaffirms the biological relevance of LAP1 and the need to deepen our knowledge about this NE protein, providing new insights about its potential functional partners that will help guiding future research towards a mechanistic understanding of LAP1's functioning.
Funding text :
This work was supported by FCT\u2014Funda\u00E7\u00E3o para a Ci\u00EAncia e Tecnologia, I.P. by project reference UIDB/04501/2020 and DOI identifier https://doi.org/10.54499/UIDB/04501/2020, and project reference UIDP/04501/2020 and DOI identifier https://doi.org/10.54499/UIDP/04501/2020. Authors acknowledge support from EPIC-XS, project number 823839, funded by the Horizon 2020 Program of the European Union. The proteomics analyses were performed in the Proteomics Unit from the Centre de Regulaci\u00F3 Gen\u00F2mica (CRG) and Universitat Pompeu Fabra (UPF). The CRG/UPF Proteomics Unit is part of the Spanish National Infrastructure for Omics Sciences (ICTS OmicsTech). C.D.P. is the recipient of a PhD fellowship\u2014SFRH/BD/140310/2018 and COVID/BD/152982/2023\u2014co-funded by FCT, the Centro 2020 Program and the European Union (Fundo Social Europeu).
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