Norine: Bioinformatics Methods and Tools for the Characterization of Newly Discovered Nonribosomal Peptides.

Flissi, Areski; Duban, Matthieu; Jacques, Philippe; Leclère, Valérie; Pupin, Maude

doi:10.1007/978-1-0716-3214-7_16

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Norine: Bioinformatics Methods and Tools for the Characterization of Newly Discovered Nonribosomal Peptides.

Flissi, Areski; Duban, Matthieu; Jacques, Philippe et al.

2023 • In Michael Burkart, Fumihiro Ishikawa (Ed.) Non-Ribosomal Peptide Biosynthesis and Engineering

Peer Reviewed verified by ORBi

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https://hdl.handle.net/2268/324942

DOI
10.1007/978-1-0716-3214-7_16

PubMed
37184712

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Keywords :

Bioinformatics chemoinformatics; NRPS; Nonribosomal peptides; Norine; Peptides; Peptide Synthases; Knowledge Bases; Peptides/chemistry; Computational Biology; Molecular Biology; Genetics

Abstract :

[en] In this chapter, we present Norine ( https://norine.univ-lille.fr/norine ), the unique resource dedicated to nonribosomal peptides. First, the content of the knowledgebase and the related tools are described. Then, a study case shows how to query Norine by annotations or structure and how to interpret the obtained results.

Disciplines :

Environmental sciences & ecology

Author, co-author :

Flissi, Areski; Université de Lille, CNRS, Centrale Lille, UMR 9189 CRIStAL, Lille, France. areski.flissi@univ-lille.fr

Duban, Matthieu; Université de Lille, UMRt BioEcoAgro 1158-INRAe, Métabolites secondaires d'origine microbienne, Charles Viollette Institute, Lille, France

Jacques, Philippe ; Université de Liège - ULiège > TERRA Research Centre

Leclère, Valérie; Université de Lille, UMRt BioEcoAgro 1158-INRAe, Métabolites secondaires d'origine microbienne, Charles Viollette Institute, Lille, France

Pupin, Maude; Université de Lille, CNRS, Centrale Lille, UMR 9189 CRIStAL, Lille, France

Language :

English

Title :

Norine: Bioinformatics Methods and Tools for the Characterization of Newly Discovered Nonribosomal Peptides.

Publication date :

2023

Main work title :

Non-Ribosomal Peptide Biosynthesis and Engineering

Author, co-author :

Michael Burkart, Fumihiro Ishikawa

Publisher :

humana press

Peer reviewed :

Peer Reviewed verified by ORBi

Additional URL :

https://link.springer.com/content/pdf/10.1007/978-1-0716-3214-7_16

Available on ORBi :

since 03 December 2024

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Bibliography

Caboche S, Pupin M, Leclère V et al (2008) NORINE: a database of nonribosomal peptides. Nucl Acids Res 36:D326–D331
Flissi A, Dufresne Y, Michalik J et al (2016) Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowd-sourcing. Nucl Acids Res 44:D1113–D1118
Flissi A, Ricart E, Campart C, Chevalier M et al (2020) Norine: update of the nonribosomal peptide resource. Nucl Acids Res 48:D465– D469
Fielding RT, Taylor RN (2002) Principled design of the modern web architecture. ACM Trans Internet Technol 2:115–150
Dufresne Y, Noé L, Leclère V et al (2015) Smi-les2Monomers: a link between chemical and biological structures for polymers. J Cheminform 7:62
Ricart E, Leclère V, Flissi A et al (2019) rBAN: retro-biosynthetic analysis of nonribosomal peptides. J Cheminform 11:13