Article (Scientific journals)
Single-Molecule Investigation of the Binding Interface Stability of SARS-CoV-2 Variants with ACE2.
Ray, Ankita; Minh Tran, Thu Thi; Santos Natividade, Rita Dos et al.
2024In ACS Nanoscience Au, 4 (2), p. 136 - 145
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Keywords :
ACE2; Atomic force microscopy; biolayer interferometry; convalescent patient sera; RBD; SARS-CoV-2; Steered molecular dynamics; Chemistry (miscellaneous); Materials Science (miscellaneous)
Abstract :
[en] The SARS-CoV-2 pandemic spurred numerous research endeavors to comprehend the virus and mitigate its global severity. Understanding the binding interface between the virus and human receptors is pivotal to these efforts and paramount to curbing infection and transmission. Here we employ atomic force microscopy and steered molecular dynamics simulation to explore SARS-CoV-2 receptor binding domain (RBD) variants and angiotensin-converting enzyme 2 (ACE2), examining the impact of mutations at key residues upon binding affinity. Our results show that the Omicron and Delta variants possess strengthened binding affinity in comparison to the Mu variant. Further, using sera from individuals either vaccinated or with acquired immunity following Delta strain infection, we assess the impact of immunity upon variant RBD/ACE2 complex formation. Single-molecule force spectroscopy analysis suggests that vaccination before infection may provide stronger protection across variants. These results underscore the need to monitor antigenic changes in order to continue developing innovative and effective SARS-CoV-2 abrogation strategies.
Disciplines :
Immunology & infectious disease
Author, co-author :
Ray, Ankita ;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
Minh Tran, Thu Thi ;  Faculty of Materials Science and Technology, University of Science-VNU HCM, 227 Nguyen Van Cu Street, District 5, 700000 Ho Chi Minh City, Vietnam ; Vietnam National University, 700000 Ho Chi Minh City, Vietnam
Santos Natividade, Rita Dos ;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
Moreira, Rodrigo A;  Basque Center for Applied Mathematics, Mazarredo 14, 48009 Bilbao, Spain
Simpson, Joshua D ;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
Mohammed, Danahe;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
Koehler, Melanie;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
L Petitjean, Simon J;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
Zhang, Qingrong;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
Bureau, Fabrice ;  Université de Liège - ULiège > GIGA > GIGA Inflammation, Infection & Immunity
Gillet, Laurent  ;  Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI) > Vaccinologie vétérinaire
Poma, Adolfo B ;  Institute of Fundamental Technological Research, Polish Academy of Sciences, Pawińskiego 5B, 02-106 Warsaw, Poland
Alsteens, David ;  Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium ; WELBIO department, WEL Research Institute, 1300 Wavre, Belgium
More authors (3 more) Less
Language :
English
Title :
Single-Molecule Investigation of the Binding Interface Stability of SARS-CoV-2 Variants with ACE2.
Publication date :
17 April 2024
Journal title :
ACS Nanoscience Au
eISSN :
2694-2496
Publisher :
American Chemical Society, United States
Volume :
4
Issue :
2
Pages :
136 - 145
Peer reviewed :
Peer Reviewed verified by ORBi
Funders :
NCN - Narodowe Centrum Nauki
UCL - Université Catholique de Louvain
Fondation Louvain
HCMUS - Ho Chi Minh City University of Science
F.R.S.-FNRS - Fonds de la Recherche Scientifique
EU - European Union
Funding text :
This work was supported by the Université catholique de Louvain, the Foundation Louvain, and the Fonds National de la Recherche Scientifique (F.R.S.-FNRS) under the Excellence of Science (EOS) program (grant ID 40007527). This project received funding from the European Research Council under the European Union’s Horizon 2020 research and innovation program (grant agreement No. 758224), from the FNRS-Welbio (Grant # CR-2019S-01). The funders had no role in study design, data collection, and analysis, decision to publish, or preparation of the paper. A.R. is an FSR incoming postdoctoral fellow of Université catholique de Louvain. J.D.S. and D.A. are postdoctoral researcher and senior research associate at the F.R.S.-FNRS. A.B.P. acknowledges financial support from the National Science Center, Poland, under grant 2022/45/B/NZ1/02519 and Polish high-performance computing infrastructure PLGrid (HPC Centers: ACK Cyfronet AGH) for providing computer facilities and support within computational grant no. PLG/2023/016519. T.T.M.T. acknowledges financial support by Vietnam National University, Ho Chi Minh City (VNU-HCM) under grant number C2020-18-19. Cartoons in b and a were created with BioRender.com .
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